Array 1 280470-279406 **** Predicted by CRISPRDetect 2.4 *** >NZ_VTJB01000003.1 Listeria monocytogenes strain FSL L7-0471 NODE_3_length_564185_cov_23.961206, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 280469 29 100.0 35 ............................. TGTATACGTCACTATTTTTTTGAAGTAGTTGCATT 280405 29 100.0 37 ............................. ACTATTTTTACGTCATAGCAGATATCTAGCGGTTCAT 280339 29 100.0 35 ............................. GCCGGATATGTGCCACCAGTTTTGTTTTTTGTTGT 280275 29 100.0 35 ............................. GGCGTTTTATCGTGCCAAATATAATAAGCTTTTCG 280211 29 100.0 36 ............................. TCACTTGAATAAACTTCACCATTCATCCCTCTTTTG 280146 29 100.0 34 ............................. CTATGTCATCCATTGTGAGCGTTTTTGTATATGG 280083 29 100.0 36 ............................. TTGGTTTCATTCACATAGCTTAAAGTTTTGCTAAAG 280018 29 100.0 37 ............................. AAGACATCTTAGATATTATCAAAACTGCTGGCATTGG 279952 29 100.0 35 ............................. AGCGCGGAGTGGGAACTCAAATTAATATCTTCTCC 279888 29 100.0 36 ............................. AAAAGAAGCTCTGTTACATCGTCTTTTTGGTCAATT 279823 29 100.0 35 ............................. TTAGGTCTTCCATTGCCATGTTTTCAACAAAAACA 279759 29 100.0 35 ............................. TCTTTACTTACCCCTTGCATTAGTTCTCCGCCCAA 279695 29 100.0 35 ............................. ACCCTTTGCAATAACTCTTTAGGCACTTTATCTGT 279631 29 100.0 37 ............................. TAATACAAAATATTCATAACTCCTACATCATTATATA 279565 29 100.0 35 ............................. CCGAATTTCAGTAATGAATTTCATTCAAAAGTAGA 279501 29 100.0 37 ............................. AAAAACTATGCAATTAGCAAAGTGATTTTATGTAATT 279435 29 93.1 0 .......................C....C | A [279410] ========== ====== ====== ====== ============================= ===================================== ================== 17 29 99.6 36 GTTTTAACTACTTATTATGAAATGTAAAT # Left flank : CATTTAAAATTTGGTGGTGAAGGTATGTATGTAATTTTAATTTATGATATTTCAATAGAAAACGGTGGGGCAAAAGTCTGGAGAAATATATTTAAGATTTGTAAAAAGTACTTAACTCATGTTCGAAAATCAGTTTTTGAAGGTGAAATAATTCCAGCGCTTTTAGTTAAGTTAAGGATGGAGTTAGATAAGTATATTCGAGATGATCAAGATTCAGTAATTGTTTTTTCTAGTAGACAACAAAGATGGCTAGAAAAAGAATTTTGGGGATTAACGGATGAAAAGACTTCTAATTTCTTTTGATGTTCTCGGTCTGTCGACCTTTAGTAGTGCGAAAAATAGTGGGGTTCGACAGATTTAGGGAAATTATTGGGGGAGAAAGAGTTTGAAGTTTTTAAGCGAAAATCTGAAGGGATAAGTTATGATTTTTACGTAATTTTTAAGAGGTCGACAAAAATAGTGACCTGAGTTATGATGGGAGTAGGCGTAAAATAGAGCGG # Right flank : GTCTTCTTAAAATTTAAACCCCAAAAATAAAAAAGGCCAGGACCCAAATCCAAGCCTTTTCCCACAACACCTAAACCAACAAAACCACAACCAACGCCAAAACCGCCGGCAAGCCCTGCTTCACTAAAATCCCCTTAGAAGAAGTCGCCCCTCCAAACAGCGCCGCCACAACCACACAGCTCAAAAAGAAAATCTGCACAGTTTCAGCAAACCCTGCTCCCGCGAAAAACAATCCCCACACAAGTCCTGCCGCAAGAAAGCCATTATAAAGCCCTTGATTCGCGAATAGCGTCTGTACTTTCTTATTCGCAAGGAGTTCTTTCTCGACACCAAATGTCTTGGCTGCGAGTTTGGTATTGGCGAAAAACATTTCTAAAATCATTATATAAATATGTTCGATCATCACGATGAAGGTTAAAATAAATGCTAAAATGGCCATGAAAAATCCCTCTTTTCTACTTCGAAGTATAGCATAGCTTGTAAATTTTTCGTAAAAATAG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTAACTACTTATTATGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 296480-295539 **** Predicted by CRISPRDetect 2.4 *** >NZ_VTJB01000003.1 Listeria monocytogenes strain FSL L7-0471 NODE_3_length_564185_cov_23.961206, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 296479 29 100.0 35 ............................. ACCATAACTATCAAAGTCCCAACACTCAATAATAC 296415 29 100.0 37 ............................. TTGTTAATGATGGAAAGAGTTTAGTTAGTTTACATAA 296349 29 100.0 37 ............................. CTCGTAATCGGGCAATTATCGACAAGTGATTCTATTT 296283 29 100.0 37 ............................. AATGGAGCAGTCCAGTCGTCTTTGCCTGTCCAAGTTT 296217 29 100.0 35 ............................. CAGCTAGTTAGTAACTATGTGAGTTTCTTATATAC 296153 29 100.0 35 ............................. ACTTTTAACGACGTTCGAGCAGGTCGAATGCAAAA 296089 29 100.0 36 ............................. AGGTTTTGACCATAAACCACAGATTCAAAACCATCA 296024 29 100.0 37 ............................. CGCTATTTATTCCTTGAAAACGTTAAAGGGTTACTAT 295958 29 100.0 37 ............................. GAGCTTGCAGAATTTAGCAATTGGGCTACGAAAAATC 295892 29 100.0 36 ............................. TTGTTCCCACAAAACGAAGGTAATATGGAAAGCGTC 295827 29 96.6 35 ................G............ ATTCATTTCTATATATTTTTTGGACTATAGTTTTA 295763 29 96.6 35 ................G............ TAAACAAGTGCTTCTGGCAATACCAACGTTCCATC 295699 29 93.1 37 A...............G............ TTGGTTCCTTTGGAAAACAACAATAGCGTGTAGTATT 295633 29 75.9 36 ......T.C.A.C...CA...T....... GCAGAAACAGCAAAATAACCAAAAGTAATGACTTTC G [295609] 295567 29 79.3 0 ......A..T....AGA......A..... | ========== ====== ====== ====== ============================= ===================================== ================== 15 29 96.1 36 GTTTTAGTTACTTATTTTGAAATGTAAAT # Left flank : GCGTCCGTGCCACCACTTCAGCTGATATTTTACTTGAAAAAGGTGCCGTAGAAGTTATCGCTTGCGCAACCCACTCCGTCATGGCTGGAAACGCAACCGAACGTTTACAAAATTCAAGTATCAAAGAAGTTATCACATCCGACTCCATCGATCTTCCAGAAGACAAGCAATTCGACAAACTAACAACCATTTCTATCGGACGAATCTTAGGCCGCGCAATCGAAGGCGTACAAGAAAACCGCTCGTTGCATCCGTTGTTTTAAAGAATAAGCAGAAAACAGTAACTTAGTAGAGTTGCTGTTTTTTTGTTATCTGTCGACCTCGAGTAGCGTGAAAAATACCGGGGATCGACAGAAAGTTGTAAGGGGTTGGGGTGGAAGAAGTTTGGCGGTATTTGCTTGGGGAAATCTTCCGGATAAGAGGAGATTTTAGATGTTTTTTGGTAGGTCGACAGAAATAGCTCTTTGAGGTAAGATGGGAGTAAGAAGAAAAGTTAGTGG # Right flank : GAAAACCTGTTATACATATGATTATCTATTTCCGTTATAATTATTCCTTGCAAATAAATTCCAAAAACAAACCCCTCATTAATTGGGTTTGTTTTTTTGTGAATAATTATAGTCAAACGAGCAATCTGTTAACAATTTAGCAATAAACGCAATAAAAAGCCGTTTTTTCACTATGGATTGTACTATAAAACATAATCTACCTATGCTAAAATTTAAGGGAAGGTAAGCTGAATAATACATATAAGGAGGACTCTACTATTGAAAAAGATTCTAGTGCCCATATTATTGTTAGCAACAATCTTATCAAGCTGTTCCTCGCCGAATGAAAAAATAACCAAAGACACTAAAATATCCAAGACTATTACAATAAGAGCAGATTACAAAGTTCCAAAAGATATTAAAGAACTTGAGGATGATAGTGCTAATATTGTTAAAGTAAAATTTCTTCAAAATAAAACGATAGGCAAGGATGGTAGTACTATCAGCGAGATAGAAATTTT # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTTACTTATTTTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTAGTTACTTATTTTGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [16-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //