Array 1 33734-30226 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJMB010000014.1 Collinsella tanakaei strain An368 An368_contig-110_13, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 33733 28 100.0 33 ............................ TGAATGGAAGCAGGACCACCAGCTCACCGACGC 33672 28 100.0 33 ............................ CAGGCTGCTGCGCGTGGAGCCGTCCGGCCCCTT 33611 28 100.0 33 ............................ CAACGTGCAGCTCATCGCGTACAACATGTCGGC 33550 28 100.0 33 ............................ CTCAACGCCGTACATGTCGGTGTACGTTCCGAA 33489 28 100.0 33 ............................ CCCATGCGAAGTCTAGCGCCGCCTCGGCGAGCT 33428 28 100.0 33 ............................ CTTTTCACCGCCGACGGCGTTATCTACGGCCAC 33367 28 100.0 33 ............................ CCGGCCATCACCTTTGATGGCGTGTACGTGCGG 33306 28 100.0 34 ............................ GACCATGGACTTCACGTGGTACGTCGACGTGATG 33244 28 100.0 33 ............................ CCGTTCTCGTTGCAGGGAATCGAGCTTGCCCAC 33183 28 100.0 33 ............................ CGCTCGGGACGGCGCCCGTCGCCGCGTTGAAGC 33122 28 100.0 33 ............................ TGCGGCGGCGGAGGACGCGCGCAACGCCGCTCA 33061 28 100.0 33 ............................ CTCGTAGGCCGCCGTATGCGGTCCCCACAGCAC 33000 28 100.0 33 ............................ CTGGTACATGACCGTGACGTGCTTGTCGTTCAC 32939 28 100.0 33 ............................ CTCTTGGGCGGATATCTCTCCCTTCTCCATGGC 32878 28 100.0 33 ............................ CAGACTCAGCGTCGCCGGCCCCGAGCAGGCCTA 32817 28 100.0 33 ............................ CATGTGGTTGCACTCTCGTTTGGCTACCGTCGA 32756 28 100.0 33 ............................ GTCACGGTGCAGGAAATCTACCCGCCCGATGTT 32695 28 100.0 33 ............................ ACGGCCTGCTGCGATGCCATCAGCTTTTCGTAC 32634 28 100.0 33 ............................ CTCGTCGCGGAGCGCTTCATCGGCCCCCTTGAT 32573 28 100.0 33 ............................ CACAGAGCGCGTCGGGGAGGATGACGAGCCCGC 32512 28 100.0 33 ............................ CCCCGCCCACTCGCCGTCCTCGCGGCAGAGGAC 32451 28 100.0 33 ............................ CGACGCGGCGCGCCAGACCATGCTGCGATACGC 32390 28 100.0 33 ............................ CATCGCGTCGATCTCGGGGTTCGTGACGGCCTC 32329 28 100.0 33 ............................ GCGCACGGATGCGTAACCGTCTTCTTTGACTAC 32268 28 100.0 33 ............................ CCGCCTGTAGCGGTCCCAATCTATATCGACGGA 32207 28 100.0 33 ............................ TGAGGTTGACCGACCTCGAGATGCGCCGACTGC 32146 28 100.0 33 ............................ GGTCTCCGTCAAGACCGGGGGCATCGGCACCGA 32085 28 100.0 33 ............................ CGGCAGATAACAAGCCCCGATAGAAAGAAGGAT 32024 28 100.0 33 ............................ GATGCGGCGCTCGTCGCCCGGGTACAGCGGCTC 31963 28 100.0 33 ............................ TCGCCCTTTGCGATGGAGACGGTGGCCTCCATG 31902 28 100.0 33 ............................ CGTCCCCATGCAGAACGTGCCGCCGTAGTCCCC 31841 28 100.0 33 ............................ CGGCGCGGCGTACGGGCACATGTTCGTGCCCTT 31780 28 100.0 33 ............................ CAGCAACAGCGACAGAATCAAGAAGCAGAGCGG 31719 28 100.0 33 ............................ CGCCCGTGACTGCATCCGCTCGAAATTCGCGGA 31658 28 100.0 33 ............................ CTCGCTGAGCGTGACCCCGTCGCAGGCGGAGCG 31597 28 100.0 33 ............................ CATCAGCATCGACGAGATAACCATCCCCGAGAT 31536 28 100.0 33 ............................ CGCGGCGGCACCGGCCCTGCAGGCGTACTTCCA 31475 28 100.0 33 ............................ CCGGGGCCGGTGCATCCGGCCCCACCTAATCAG 31414 28 100.0 33 ............................ CAAGAAATATCGTCCATCGTGAGCGTGATATCG 31353 28 100.0 33 ............................ CTCGAAAATCCTCACAAGCAGGTTGCTTGCTTG 31292 28 100.0 34 ............................ TACACTCTGACAATAAGCAATGTCACCGGCTTGA 31230 28 100.0 33 ............................ TGCGTAGGCCCATTCGCAAGGCTTCCCATCGTC 31169 28 100.0 33 ............................ CGACGGGTCCACCGCCTTGTTGACGCCCTCGAT 31108 28 100.0 33 ............................ CGGCCCAGACCGCATGGCAATCCCGTGCCGAGC 31047 28 100.0 33 ............................ CAATTGCCAGGGCGACGGTTTCGATATTCGCGG 30986 28 100.0 33 ............................ CGACGAGCTGATTATCCTTGAGTACCCGGCCTT 30925 28 100.0 33 ............................ GCACTTGTAGGTGGTGGGCGTGCCATCGATAAG 30864 28 100.0 33 ............................ TCGCACCAAAAATGCGTCAAGCCGTACAGGGAG 30803 28 100.0 33 ............................ CGCGAACAAGATGAGCACGAACATCGAGTCCAT 30742 28 100.0 33 ............................ GATGAAAAAACGGCCCGCCCTCATAACGGACAT 30681 28 100.0 33 ............................ TGGAGAGCGCCACGCAATTTAACCCAATGGCCC 30620 28 100.0 33 ............................ CTACGCAATGCTCGACAACCTCAAGCTGGGCTA 30559 28 96.4 33 ......T..................... CGCGGCGGCAGGCAGGGCCGGGAAGGCGGCGGA 30498 28 100.0 33 ............................ CTCCACCAGGTCGCCGAGGTCGAACCCTTTCAG 30437 28 100.0 33 ............................ CACCTTGAAGTGGCGCGGGTCGCCCGCGTAGTC 30376 28 100.0 33 ............................ CCGGTAGCGCGTGATGAGTGCGGGGACCGGGCT 30315 28 96.4 33 .........................G.. CAGCTCGTAGATGTGGTTGTCCTTCGGGAACTC 30254 28 89.3 0 ...T...T.............G...... | T [30228] ========== ====== ====== ====== ============================ ================================== ================== 58 28 99.7 33 GTGCTCCCCGCGTATGCGGGGATGATCC # Left flank : ATGAGCGCGTGGGGGAAGTTCCTGCTGGAAGATTGTATGGCGAAGTCGACGATGGGGGACGGCAATGACGGTGATGGTTTTGACCGCATGCCCCTCGGGCGTCAAGGGCGACTTGAGCAGATGGCTGTTAGAGATTGCGCCGGGCGTATTTGTTGGCAGGATTTCAGCGAGGCTGCGTGAGCGTTTGTGGGCGCGCGTAATAAGCATGCTAAGAGATGGTCGTGCGATTATGGTGTATTCCGCCCGAAACGAGCAACATTTCTCATTCGAAGTGTTTCAGCCTGATTGGAAAGTTGTCGACTGCGACGGTATTGAACTGATAAAGCGACCGCGTGGTACGGACGACGCAACTCTGACTGGCGTTAAGCAAAAGGGGTGGAGCTCAGCAAGCAAGCGCCATAAGGCGAGAAGATATAGCTCGTAGATTTGACGTTCAATGATTGGCTGATAAACTGAAGTGGGATCAAGGGGATTCTGGCTTGCGGCGCAGGTCGTTTAGT # Right flank : GAGCTTATTAAGCTGCGTCTTTGCTAAGACGAGGGGGGTCCTTATGGCGCGAATGGTGTCCCTTCGGGCGCGAGAGGATGCCAATGCCAGCCCCCTGCTGCCGTACCTTTGATGTGTGGTCAGATGGCACGATAGAAAGGACGTGGATCAAATGGGAACCCAGCATGCAGGCGTCATTCGCGGGCTGAGCATCGCGACGACGGTTATCGCCGCGCTGTGCACCGTGATTCTTCTGGTGGTATTGGCGGCATTTGGCTTGGGCGGGGTTGTGCTCAGCAATCCTGATATGCGCGATCAGGCCTCGTACGAGCTCGATATCGACCCTGAAGACGTCCAATCGCTCGAGGACCTCGGGATTCCCGCGGGCGATGATGCCGCCTTCGCCGGCTTTGTTCTCGGTGCGGGCGGCGCGTTGGCGGGTGTTGCGGTTGCATGCCACGTGGTTGCGCTGATCGCCGGCATCCTGGGCATCTGCAACGCGCGCAGGCCGGAGAAAGCTG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGTATGCGGGGATGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGAATGCGGGGATGATCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //