Array 1 125125-124303 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAINEH010000005.1 Escherichia coli strain C12-3 c_000000000005, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 125124 29 100.0 32 ............................. GCCGGGTTAAGAAGGTGTATGGATGGCCCGGA 125063 29 100.0 32 ............................. GGTTACGCCTGCACAGAGTACAATGCGTGGGG 125002 29 100.0 32 ............................. CGGTGGCAGTGATGAGGCGTTCCCAATTAATG 124941 29 100.0 32 ............................. GCTCATTTCAAATGGTCAGGTCCGGTGGTTTT 124880 29 96.6 32 ............................C TGATCACATCATGTTTATTCGCGGTCGTATTG 124819 29 100.0 32 ............................. TACTGGAAAAAGCTGGCGACGGTGAGCGCAGC 124758 29 100.0 32 ............................. GGCACGGAATTGTTATGCTGTTCCCCTGACCG 124697 29 100.0 32 ............................. ATCGGACGATGGCGATCGCAATCGCGCGGGAA 124636 29 100.0 32 ............................. AGGACGAAACGACCGGAAAACTGGCGACGGGC 124575 29 100.0 32 ............................. CGTCCGCGGCTGCAACTGATGCCGGGGCTTAT 124514 29 100.0 32 ............................. AACCTTGTCGGGTCGCCCGTGCGTCATGATGA 124453 29 100.0 32 ............................. ACTGCAAAGTTCTTCACGCTGGTTTTTATGCA 124392 29 100.0 32 ............................. TTTTTGTTCTCTTCAAAACGCCGAACAACCAA 124331 29 93.1 0 ............T.....A.......... | ========== ====== ====== ====== ============================= ================================ ================== 14 29 99.3 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CATCCTGACTTTCCAGAACCATACGAATCGCCCGCTGACGGACTTCGGGGGAAAAACGAGTATTTTTAGTCATCCTGTTTACCTCTTTCTCAGGGAGTTTAGTCTCCAGGATTTCCGGGGCGGTTCAGATCTTTAATAATAAGGAAATGTTACATTAAGGTTGGTGGGTTGTTTTTATGGGAAAAAATGCTTTAAGAACAAATGTATACTTTTAG # Right flank : GACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACTCCCAACTCCCATTTTCATACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCTGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCAGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAATTTGTTGCTTCTACCGAAAGTACGGCAATACCGGCTTTGTCGAAAACTTCGGCGTCATTACAACAGCCAGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCACTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 17648-16764 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAINEH010000010.1 Escherichia coli strain C12-3 c_000000000010, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 17647 29 100.0 32 ............................. ACAGTACCGGAGTTTGACGGTGCCAACGGCGG 17586 29 100.0 32 ............................. ACAATCAGGGAACGATTGTTGACACTGTAAAA 17525 29 100.0 32 ............................. ACCTGAACGAAACGCAAAATAGTTTCTTTATG 17464 29 100.0 32 ............................. CACTGACAGTGAAGCTGAATTACAGGCAGAGG 17403 29 100.0 32 ............................. TCGGTTTGCGCGTATTGTTGTTCGGGGTCTAT 17342 29 100.0 33 ............................. TAGGTAAATCACAGCTATTTGATAAGGGCGTGT 17280 29 100.0 32 ............................. TACCGATAATCGGTACAAGATAGTATTTACAT 17219 29 100.0 32 ............................. GACTATCGCGGGCTGCTGAAATCAACCGGCGA 17158 29 100.0 32 ............................. AGTCGAAATGAGGCGCGTGTTCTGGAGGATAT 17097 29 96.6 32 ............................T GTGTTTGCGGCATTAACGCTCACCAGCATTTC 17036 29 100.0 32 ............................. ACGTGGTCATGGGTGCTGCTGTTGCAGAGCCA 16975 29 100.0 32 ............................. AGCAGATACACGGCTTTGTATTCCGTGCGCCC 16914 29 100.0 32 ............................. AATAGCAATAGTCCATAGATTTGCGAAAACAG 16853 29 100.0 32 ............................. GAGCCTGACGAGACTACTGAGGCCGTTCTGTC 16792 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================= ================== 15 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //