Array 1 298977-298483 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAROO010000001.1 Listeria booriae strain FSL L7-1830 NODE_1_length_1281495_cov_26.649452, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 298976 30 83.3 36 CG.....CC..G.................. TAATCCGAAACTAGGCACTCAAGCAACATTTGAAAA G,G,T [298961,298966,298970] 298907 30 100.0 35 .............................. GATTCTGCGTGGTTGTATTGCCAGATGGTTATTAA 298842 30 100.0 36 .............................. GGGAAATGGAAAGATTGGTGATTTAGTAGCAACGGC 298776 30 100.0 36 .............................. ACGACCCGAATCCTTCTAAACGCATCGCCTCGTTTA 298710 30 100.0 36 .............................. AATTGAAACACCAGCCTCTAAAAGAATCGGGATTAG 298644 30 100.0 36 .............................. TATGTTAAAACAACATTCAAAAAACAAGATGGTGAA 298578 30 100.0 36 .............................. TCTTAGCACCGGAACAGCCACAAAAGGGTGTTTCAA 298512 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ==================================== ================== 8 30 97.9 36 ATTTACATTTCACATTACTTAGATAAAAAC # Left flank : CTCTTCAGCAATTTGTTTCGCAAGATTCGGAGAAGAAGTCGTCATATCAATAGCAATAGCTCCCGAACGAAGCGTAGTCAACAGCCCGTCCTCCGCCAAGTAAAGCTCCTCCACATCAGTCGGATATCCAACCATCGTGATAAGCACATCGACCAGAGGCGCCAAATCCTGCGGTGTCTCATGCCAGATCGCCCCCTCTTGAATCACACTTTCCGCCTTACTTTTCGTCCGCGTATAAATATGTACCTCAAACCCCGCCGCCATCAAATTCCGCACCATACTAGCGCCCATAACCCCAACACCAATAAATCCAATTTTCGTCATCGCAAAAACTCCTCCTTCTATACAGTTCGCTTCTAAACAAAGTGTACATCTGGGGGAGTAAAAATGCAAATGGAGTTGGTTGGGGATTGTTGAATGATAATTGATTCTATAAAAAATGGATAGAAACACTGCTTCTGTGGGCAATCTAGTCTAGATTCATATTACTTAGATAAAAA # Right flank : AGGTACCCCATCAACGCCTACTCCCATCATACCTCAAACACTCAAATCTGTCGACCGACAACCAAATCCTAAATTTCCGCTCCCGAACCTTACAACCGAACCTCCAAAAACGGTCTCAAATCTGGTGACACCAACGCTTAACAAAAATCTGTCGATGCCCCCTAATTTCCACGCTACCGACGGTCGACAGATTTTTAGGATTCTTATTCCCGCTTTTATCCACAAAGAAAAACCCGAGGAAAATCCCCGGGCCTTCCAAACAACGAAATTACTCCGCTGTATATTTATTAACTAACGCTACAACTTCTTCTTCTGTAGCTTGTTGTAGTGCTTCGTCCGCTAGTTTCGCCATTTCTGTGCGATCTAGGCGTTTGATTAATGAACGTGATTTTAGAATGCTTGATGCGCTCATAGAGAACTCATCTAGACCCATTCCTAACAACAATGGTACAGCTGTTTGATCGCCGGCCATTTCGCCACACATACCAGCCCATTTGCCT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTACATTTCACATTACTTAGATAAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [50.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 190929-194986 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAROO010000004.1 Listeria booriae strain FSL L7-1830 NODE_4_length_210236_cov_36.629523, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 190929 36 100.0 30 .................................... GGGAGACACTGTTTTACATTTACGAATCAA 190995 36 100.0 30 .................................... AATTCAAATGATATTTATGAATTATTAGCA 191061 36 100.0 30 .................................... TACATTATACATTTAAAGAATACGCTCAAT 191127 36 100.0 30 .................................... TCTTTTTAATGTATCTTGTAAACTTTTGTC 191193 36 100.0 30 .................................... ATAAGACAATGCTTTTATCAACTAAAGTCT 191259 36 100.0 28 .................................... AAAATCGTAACAAAAAACAATACGGCAT 191323 36 100.0 30 .................................... ATTACAAGCACAATTTGATTTAAAACAAGA 191389 36 100.0 30 .................................... AAATCAAAGAAGTTGAATTTAAAGGATACA 191455 36 100.0 30 .................................... TTATCATGTGAAGTAGCTGGTACTACTCTA 191521 36 100.0 30 .................................... AACTGTCACTTGTATAAATTATTTTAACTA 191587 36 100.0 30 .................................... AATTAAATTCGAAGGTTGGAATTTAATTAT 191653 36 100.0 30 .................................... GTAATGTTGAGTGTTGGAGTATTGGTATCA 191719 36 100.0 30 .................................... GGAATTTATGTCCGTTCAGAATTACGACGA 191785 36 100.0 30 .................................... AAAGAACACAATATATAACAACTACAAATG 191851 36 100.0 30 .................................... CCCTTTCTTTTCTGGATGTAACAAGAGCAA 191917 36 100.0 30 .................................... TAGAAGGTAAAGGGCAAATGTATATCACTA 191983 36 100.0 29 .................................... TTGATCTAACCATAAACGCTTGTTACGGA 192048 36 100.0 30 .................................... TTTCCCCAACTTTAACAACTAATAAAGGGG 192114 36 100.0 30 .................................... GTACAATTCGGTCATACACTGCGCTATAGT 192180 36 100.0 30 .................................... GAATTCCAGTAGGTGAGCAATACATGATGG 192246 36 100.0 30 .................................... TGATTGATGAAGCATGTCCAAAGACCTATC 192312 36 100.0 30 .................................... CATTCAAATGACTTACGACATTCAAACAGA 192378 36 100.0 30 .................................... ACCACTATTCCCGTAGTGCCTATTATAGCA 192444 36 100.0 30 .................................... CGGTTAGAGTGTCATCTATAGATGGTATGG 192510 36 100.0 30 .................................... GGGCTATTGACGACCTGAAAGAATCTGAAC 192576 36 100.0 30 .................................... AAACTATTTAATGATTTCACTACGCGGTCA 192642 36 100.0 30 .................................... CTAGCTTATATCAATGTGAACAAGGAATCG 192708 36 100.0 30 .................................... GTAATCAGAATCGAGATAATACGTGCGGTC 192774 36 100.0 30 .................................... GGATTTCCGTTTATTCTGTGGATTAGGTAT 192840 36 97.2 30 ........G........................... AGTACCGCGGCGACTACCGACCAAGCCCCA 192906 36 100.0 30 .................................... GGGATTTAGTGGGTGCAACTGATGGCGGTG 192972 36 100.0 30 .................................... CAATAGTTAAAACATTGGATGCTGTTAAGT 193038 36 100.0 30 .................................... GGGATGGTGAGCCAGTGACTCTTTGGATAG 193104 36 100.0 30 .................................... TGTGTGGCTACAAGTCTACTATGACCGCAA 193170 36 100.0 30 .................................... TGAATCAGCATGTGGACTCATTGCGATACG 193236 36 97.2 30 ........C........................... AATTATCTGGGGTAACAGGTCAAGCGGCAC 193302 36 100.0 30 .................................... ACGGATTAACCGCCCGTGACCTTCCAGATT 193368 36 100.0 30 .................................... AGGTGGATTGTAGCAGTAGAACACATGAGG 193434 36 100.0 30 .................................... TGTGCAAACAATGACTTCATACATAGCGTA 193500 36 100.0 30 .................................... TAACAATTGGTTTACCTGAGTGACTATCAA 193566 36 100.0 29 .................................... ACAAATAAAAACTATCCACGTGAACGGCG 193631 36 100.0 30 .................................... GCCCAACAAGTTGAGCTATGTCTGCACGCG 193697 36 100.0 29 .................................... CCAACAAGTTGAGCTATGTCTGCACGCGT 193762 36 100.0 30 .................................... TTCACATCTTTATAAATATGTTAGCCTTAA 193828 36 100.0 29 .................................... TGTCTTGGATTTGCGCAATAAAATAACGA 193893 36 100.0 31 .................................... CCGATGTCCTTTGCGCTCACAGCTATCTTAG 193960 36 100.0 30 .................................... AGTGATGAATATCCTGTAACGCCTTTCCAT 194026 36 100.0 30 .................................... TCACGGCTAAAGAAGCCATGGAGTTGTTAT 194092 36 97.2 30 ................G................... CTCAGATTTCTAAACGCGGTGTTGGCCGGT 194158 36 100.0 30 .................................... TCCTTATGAAACACCTCCTTATGCTATGTA 194224 36 100.0 30 .................................... AATAGAACAGCAATATCGAAAGAAGTCCTT 194290 36 100.0 30 .................................... AATTGGTATGTCATACACTCAACAAGACCT 194356 36 100.0 30 .................................... GAGCAATTGTTGAAACTACCGAGGCATTGC 194422 36 100.0 30 .................................... ATATCATCTTATAGAACGAGAATCTTCTTT 194488 36 100.0 30 .................................... TCAAAATCATACTTAAACCGCAGAATCTTG 194554 36 100.0 30 .................................... CTTTTGCACAATCGTTGTATCTAACACTTG 194620 36 100.0 30 .................................... GATATTTTTGATTTGATGGATGTTCCAGTA 194686 36 100.0 30 .................................... ATAGATCAGTAATTACAGACTCAAATATGA 194752 36 100.0 30 .................................... TATTTTTCCTGCAATGGGGCACATGCCCTT 194818 36 100.0 30 .................................... TTTTCAGTATCATCAACGTCACGCGGTGCA 194884 36 100.0 30 .................................... TTATCATAGGCACCCTCAGACAATTTGCTG 194950 36 80.6 0 .......................AAA..C....CCA | G [194977] ========== ====== ====== ====== ==================================== =============================== ================== 62 36 99.6 30 ATTTTGGTACTCTCTTAATTTTTGGTATTAGGAAAC # Left flank : ATATTATAAAACTAATACTGGGTATGAGTATAACAAAACCAACCCTTGTGTTGGTGGAGGGGTTTAGGTCTGGTCTGAATGATATAGAATGTGCAAATGCAGAAAGAATGTTACAGGAAATGGCTAGAAGAGGTATGCATGTCATTGTACTTGACGATAATTTGGTAGGTGCTTCTGTAAATTACTATTACCAAGATTTGATTGTAAATAAATTAGAAATATTGGGTGTTAAAAAGATTATTCTAGAATCCAGCCCTATCTTGAGTAACTCTGAAGACTTTCTGCAAGCTATAAATTGGTCTATAGAGGCTGTGGATAAGTCCAAGGGGAAAGTAGTGGAATTGGAGCTACAGTCTGTGGATAACTTATGTATTTTTACATTGATCTATTTAATTTTCACATTTTTAAAATGGCCACTAATTGTTGATTTTAGAGGGGTTAGGAGTGATTTGATAGAATATCTTGCAGAGATTGTGAGTGGTGAGGTATAATTAGGAGGT # Right flank : ATGGGCTAAAGAGCAACATAAGAATTTCATAATGTGTTGCAGGTAATTGCCACAAATGTAAAGGCATATGTTAAACTATTTATTAAAACAAGCAACAGTCGGAGGCGTATATATGCTTTTTTTAGACAAAACAATAGAACTAAATGATACAGAAATGACGATTTACCACTATGTAGTCGGCAATTTGGACACGGTTATTTACATGCGGATTCGGGATTTAGCCGATGCCACCCATGTTAGCACAACGACAATTTTACGATTTTGCCGGAAGTTTGGGTGTAACGGTTTTTCCGAGTTTCGTGTGAAGCTGCAAATGTATGCTCAGAATCGGACGAAAATAAGTGTGGATATGTCGGATGAGACAACGTATATTGATTTTCTGAAACGTACTGCTCAGCCTGAATTCAAGGCGAATATTGCCCAGTCTGCGAAAATTTTACGCGATGCGGAGTTGGTTTTATTTGTTGGCATCGGGGCGTCTGGAATTATCGCTGAATATG # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTTGGTACTCTCTTAATTTTTGGTATTAGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.10,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 6757-5751 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAROO010000008.1 Listeria booriae strain FSL L7-1830 NODE_8_length_147235_cov_33.614204, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 6756 30 100.0 35 .............................. TGTTTATAATCTTCTAATAGATCCAACGATACATC 6691 30 100.0 34 .............................. GTGACACCCTTACTTACCATTGCTGAGGTATATT 6627 30 100.0 34 .............................. ATTCAAATCCGCGGTTGTGTATGTCGCCGTTTTT 6563 30 100.0 35 .............................. TCCATTAAAACGTCTCCTCATTTTCCATGTTCATT 6498 30 100.0 35 .............................. ACGGCCACAAAGCTAACGGCGTTAACACCCATAAA 6433 30 100.0 35 .............................. TGACTCGTTCGCTATCGGGCGTCCCTGCCGTCGTT 6368 30 100.0 37 .............................. ATCCCTTCTTAGCCTCATCGCTTTTAGCCATCTTAAC 6301 30 100.0 35 .............................. TTCACTTCCACAACAACTTGTGCTTGCGCAACCTG 6236 30 100.0 37 .............................. AACGTACAATTTTCTGGGGTGCAGTTGAACTGGCTGG 6169 30 100.0 36 .............................. TGTCTTGATCCGATGGATAATTCACATGGAACTTCA 6103 30 100.0 36 .............................. ACGACTGGAGCAAATGGTAAAGTAACAGTTTCTGAT 6037 30 100.0 36 .............................. CCAGTATGTCTGTAATGGAGCTCCTGCAAGAGTATT T [6025] 5970 30 90.0 35 TG...........C................ CAGACAGATGCGGCGGCGGCTGAGTTTGAACGCTT 5905 30 100.0 37 .............................. TTGTCTTCGCCTAATGAACCGAAGAGCGCACTTGTTG 5838 30 83.3 27 CG...........C...A......C..... TAGGAAAAGGGCGCACTTATACACCCT Deletion [5782] 5781 30 73.3 0 .C....TC.......C.A.....CA...C. | G [5771] ========== ====== ====== ====== ============================== ===================================== ================== 16 30 96.7 35 GTTTTTATCTAAGTAATGTGAAATGTAAAT # Left flank : AAGATTTGGTGGTGAGATATGTATATTATCCTGATTTACGACATAGCAATGGATAACGGTGGCCCGAAAGTATCGAGAAACATTTTCAAAATCTGCAAAAAATATTTAACCCACGTGCAAAAATCGGTATTCGAAGGCGAAATCACACCGGCACTACTTGCCAAATTGCGAATGGAATTAGACCAGTATATTCGTGACGAAGAAGATTCCGTCATTGTGTTTTCTAGCAGAAATGAAAGATGGCTGGAAAAGGAGTTTTGGGGCGTTGCGGATGAGAAAACATCGAATTTCTTTTAGTATGTAGAAAAATCTGTCGACCCCCAGTAGTGCAAAGTAATGGGGACATCGACAGATTTTTGTTAAGCGTTGGTGTGATTGGGTTCAAGGCTGTTTTTGAAGTTCGGCTTGTAAGGTTTGAGAGCGAGAATTCAGGATTTGGTTGTCGGTCGACAGATTTGGGTGTTTGAGGTATGATGGGAGTAGGCGTTGATGGGGTACCT # Right flank : CGGTCTGTTTAGCTACGATTGCTTTGGTAGACAATCTCAGTCTACCAAGCAATGTTCGCAGCCAATAGACTCTACTTTCCAGTCTTCACAAAAAATCCTCACGATAATCTTTAACATACTGATCAAACGAAGTAGCCTCACGTTGCAGCAATTCCTGTGCTGTTGGGGTTATTTGTTTTGCGTTTCCCATTTGGGTAATGAAGTAAAGCATGGTCATGACGTTGGCGAATGCTTTTGGGGTTCCGCGTCTTATTATGGTTGCGCGAAACCGTAATAGGGACGGCTTGCTGTATGTTATTTTTCTCCCTAGAATGGTTGTCATCTTCTCGGCCACTTCATAATACGTCAATGCTTCTTTTCCGGTAATACTATACTTTTGTCCGATATGTTGGGGTGTATTCATCAGGCAAATAGCAGCGATCTCCCCAATATCACGCGTATCAATAAAGCTCGTCCGCGCATTGCCCGCAGGAATGAATAAATCATCATGTTTCTGAATA # Questionable array : NO Score: 3.09 # Score Detail : 1:0, 2:0, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [18-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 2 90448-90746 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAROO010000008.1 Listeria booriae strain FSL L7-1830 NODE_8_length_147235_cov_33.614204, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 90448 36 100.0 30 .................................... AAAAAACAATGGCGCTAGACCTTCTGAAAT 90514 36 100.0 29 .................................... TTAAAGATAGCGTGAAATGGTTTCCAGTC 90579 36 100.0 30 .................................... GTTGGTCGTTTCCTTCTGGCTGTGCAACTA 90645 36 100.0 30 .................................... AAAGACAACAAGAAGGCATTTATACAGTAT 90711 36 86.1 0 ..........................GT.T...TA. | ========== ====== ====== ====== ==================================== ============================== ================== 5 36 97.2 30 GTTTTAGTCCTCTTCTGTTTTGAGGTACTCTAAATC # Left flank : ATTGTACAGATATCCCCATATCAAATATCTTCGAAAAATCATCAACACTTGGCAGTTTCTTTGTACTAATGATTTCTTCGTCTTGAAGTGTGATAGGTAACGCCTTGCTCCCGTCTTTCTTCAATAAACGTATAACCTCATCATTTTTGAGAAATGGTTCTAGTGAGTCTTCCAAGTAAAAAGCATCAAGAACTATCTGCTCCTCCTTTACGAAGAGGTAACTTTCTTGGAACTCCTTGTCAAAAATAGAATTGAATAGCTCTAGCTCTACTTCATCAGACTGTTTTAGGCTGTCTCGTGAGTCGAGGAAGAAAGTAAGTTTTATCATTTTTGCACTCCTAACTGCTTTCGAAACTAAAATAGGATACATCATTGTTTTGCAAGTAAATACTGCTTCATTGACTACCGATTGGATGAGCATCACTTTGAATGCTCTATTTTCTATGGTTACTAACCTCCGATTAATTAAAAATAACTTATCCCACTTATCCACAGTAGAG # Right flank : CTTTAATCTTTGTAATTCTTTTATTAATAATTGAAATACCCTACGTCACATCTCCAATAGCGCCTTCACAATACTACAATACTCTTCTGAAACTTGATTCGTTTCAATATAACTGTCATTTAATTTTTTCCCACTTAAATGTCTCAATTTTTTTGGTTTTAGGCTTGCTATCACCAATCTGTGTTTATTGTTTTTCAAGTTAGCAAACACAACACACATACCATGCTTATCTAAAAGATCGATTAATGATTTAGTAACTGCGTTCTTTAATTTGCGGTCATATTTAAGCATTTCTCTTAATTTCTCGAATAAATACAATAACGAATATTTATGTTTTGGTGATAAATAATTTAAATGTGCTATATAGTTCCTTCCATTTTTCTCAGAAACAAATAGCCCTGCCTTGTTCATGAAAATATCCAGCTTTTCAATATAATCTGGCCTGTTTTTTCTGGTAGTATTAATCCAGCTATCTACTCTTTCGGTATGTCCAGAACTCT # Questionable array : NO Score: 2.92 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTCCTCTTCTGTTTTGAGGTACTCTAAATC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.40,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 3 94185-94552 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAROO010000008.1 Listeria booriae strain FSL L7-1830 NODE_8_length_147235_cov_33.614204, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================= ================== 94185 37 100.0 29 ..................................... TTATACAGTAGAATACAGGGCGAGCGACA 94251 37 100.0 29 ..................................... GGTCATACAGGTAGTTACGGAAAATCAAC 94317 37 100.0 29 ..................................... AAAGAACTACTAGAAAAAGCTAAAAACCT 94383 37 100.0 29 ..................................... CCGGAATGCCCAAGCCAATGAGCGAACTC 94449 37 94.6 29 ........A...............A............ TGCACTTTCAATACGAAATGATAGCCGTT 94515 37 83.8 0 ..........................G.AA..C..AT | T [94540] ========== ====== ====== ====== ===================================== ============================= ================== 6 37 96.4 29 GTTTTAGTCCTCTTTTGTTTTGAGGTACTCTAAATCA # Left flank : GTTTTTCTTGGTGTAATACCGCTGACATTAATTCTGTTATTTCTTTGTTGATTGCTATTTTATGTTTATTTTTTTCTTTTTCGTTGAGTTTCCTCACTGTTTTGTTGAGAATACTCTTATAAAACGACTCTTTCTTTTTATCAAATATAATTTCTTCTGTCTTGTTCTCATCAATACCTTCATAAACCAACTGGCCTTCTTTACTTGTCCTCCCCATTACGATAGTTCTTCCATCAACTCTCATTTTGGTGATTTTCATTTGTCTGCTCAGCTCCATTTAGTTTTATAGTTGTATAGCTAGATGTTTCAACTTTCACATGTGTATGATATTGCTAATATTTATCAATATATTCATTATACAAGAAGGTATTACGTAAAACAACATCCATTGGCAATTATCCACTGTGCTAATAATTGAATAAAGCCATAAAAACTACTGATCCAATTCTTTGAATCACAGTTTTTATGGCTTTATTGTCGAATACTTATCCACAGAAGAG # Right flank : TCTATTTACTTTCAACAGTTTAACTATACCAGATTATTAGTAACTCTGCATCTTCGCGTAATCACGCGTACTAAATAATAATTTCCCGTACTAAATCAACAAAAAACACCATAAACCGCATCTTACACAGCGATCTACAGTGTTTTCCGTTCTTTCTAAGCGGAGAAACGGGGATTCTGATGGTTGGATGAAATGCACTCGTGGCGCTGGTTTCAATAGCATTTTTATTAACTCGGTGGCAATTTTGTGGCAAATATTTTAAGAAGATGGCGAGAGATTTCACTTGTCATCTTTCAATTATTTATCAATCCAGTTTAAAGTTCACTATACAAATTAACTAGTCTAAATTGAAAATCTTGAATTGCAAATTTATAGCCCGCAATTTGATAATTAGAGTCCATGGTTTCACAAATCGACGGTACGCCTTTTCCATTATCGCCCAGAACAGCTCTAATTAAATTAATACCGCCTCTATTCATTACATCAATGTAATGATCCGT # Questionable array : NO Score: 3.08 # Score Detail : 1:0, 2:0, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTCCTCTTTTGTTTTGAGGTACTCTAAATCA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.40,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 66785-67276 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAROO010000009.1 Listeria booriae strain FSL L7-1830 NODE_9_length_115030_cov_25.113116, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 66785 30 100.0 36 .............................. ACTTAGATGAGTACAAGAAACGCGTCGATTACCTGT 66851 30 100.0 37 .............................. GATTATAAAAAGGTGCTAATATTAAGATATTATAGGC 66918 30 100.0 36 .............................. TCCTTTTCGTAATGATAGAAGCTCATGATTAGTTGA 66984 30 100.0 36 .............................. TTTGTTTCGACTACTTTGTCGTAGATTTCCGCGGCT 67050 30 100.0 35 .............................. CACGGAAAAGACTTCCCTTTTTATCGAAGCTGAAA 67115 30 100.0 36 .............................. AAAATATCTAGTTGGTATCGCATGGAGTGTTTTTCT 67181 30 96.7 36 ....C......................... TAGTGTGCCAGTGCGCCACCTAAACTGTGTCCTGTA 67247 30 80.0 0 .................C.A...CA...TC | ========== ====== ====== ====== ============================== ===================================== ================== 8 30 97.1 36 GTTTTTATCTAAGTAATGTGTAATGTAAAT # Left flank : GACGCTGAACGCAATATCAGACCAGTACCGAATTCCGAGAAAATTTGGGATGCGGATATCGTTCTAATTGCCGTCGGATTTGCCGGCACAACCAAATCAGTGTTTGAAGATTTCCAAGTAGCAAAAACAAACCGTCACACAATCGATGCTAGAAAAGGTTTTTACCGTACCAACGTAGAAGGCATCTTCGCATGTGGCGACGCAAGATACGGCCAAAGCCTTGTTGTAACAGCGATTAACGAAGGAAGAGAAGCCGCCCGCGAAGTAGACTTCTATTTGATGGGCGAAACATTCTTACCATGATAAAAAATCTGTCGACCTCCAGTAGCGTAAAAACTAGGGGACATCGACAGATTTGTTTTTTGCTTAGGGAGAGAAGGGATTAGGATGGTTTTCGAGAGGTTGAAATAAATAATCAGGTGCAAAAAAGACAAATTTCTTGGAGGTCGACAGATTTGGGGTGTTGAGGTATGATGGGAGTAAGAGTTGAGAGGGTACCT # Right flank : CCCCAAAGAAGGAGAGACACCAAATGACTATGGAAAAATTAAAACTACGAGTCACCATAGACAGACCTATCGGATTTAAAGACGACTACGGAAATACATACCCAATAAACTACGGATTCGTTCCCGGTGTCATAGCCGGAGATGGCGAAGAACAAGATGTTTACATAATTTCTAAAAATGCAACAGCCCCACTCGACACATTTGAAGGAATACTCGTCGCGGTCATACACCGGAAAAATGATACCGAAGACAAGTGGGTAGTTACCTCAAAAAACGAATTATTATCCAAACAAGAGATATTCGAAAAAACGCATTTTCTAGAACAATACTTTGATTCCGTTATCGAGATTCTTTAACAAATACAACAGTATAAACGCTCACCTTCTCACAAAATACCGAAATAAAAGATGAATCACTATTAAAAACAGTACACTAACCATGAAAAAACCACTCGATACCCAGTCCATAAAAAAGGATACAAATACTAAAACTACGAGAGC # Questionable array : NO Score: 3.11 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATGTGTAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA //