Array 1 188037-187640 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP018025.1 Alteromonas mediterranea strain CP48 plasmid pAMCP48-600, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 188036 29 100.0 32 ............................. ACTTGATGATGAGTCTTTTTTTAAAGCAGTAG 187975 29 96.6 32 ................T............ GTAATGGACTTATTGTGTGCGGCCGCAGAGAA 187914 29 100.0 32 ............................. CCAAGGGCTTAGGGACTGGTCAAAGACCAACC 187853 29 96.6 32 ................T............ TCAATAAAGTGCGAAGAAGGCATTGGCTCTTT 187792 29 93.1 33 ............C...T............ TGAAAACCTGATAATGTTGACTCACTAACAGGT 187730 29 89.7 33 ....A.....T....T............. CAACATCGAGTATCGAGCAATATGGCCATGTGA 187668 29 86.2 0 .....................A.A.T.T. | ========== ====== ====== ====== ============================= ================================= ================== 7 29 94.6 32 GTATTCCCCGCGTAGGCGGGGGTGAACCG # Left flank : GAAATCAATCACATTGATGCGATGATTAAAGTAAAGAAAGAATCTAAATCCGGTGCAACCGAAACGATCCAGCGGCCACTAGAAGGTTACGAAGCCATTGTCCCCGGTACTGTCATGCAACACCGTCTTCCATTAACAATGGTCAACGCAATGGAGATGGCACTCTTCTTAGAGTCTCTTGCTACTTACGCTAAAAACCCCGTAATAGGTGGACATAAAAACCATGCCTGCGGCTTCTTCAGCGCCACTTACGCCATTCGTCATTGGCCCGAAGACGAAGATGTCTCGCGCGAAGTCGCGAGCATTCGCTTTAATGAAACGGGCTTTTTTATCGAGGGTGAAATTGCTGATGAACTACAATCTATTCGCAAAACCTTCAGGACCGCAGTAAGTGATGGCAAATTTAATTTCAAAGCCTTTTTATTTAAGCATGCTGTCTAAACGATGGTGGCTTGAAAGCAGCCATTAAACTTGTTCTTTCACAATGTTTTACAGTTAGA # Right flank : ACTGATGTAGCTTATTCGCTCCACCACTCATCATGAGAAGAAAAAAATACCGTCCACATGATAATATCAGTGTATATAAAGGACTTTTGAAGCCACTGTTATGCCATCACCCATCAACATCACACTTATCTCTGAACCAAGCAAAAACGAGATCATATTAAAGAATGGTAACCGGAGTATTACCTTCCCTCGTAATGAGCTCCCCTTCCATTTGGAGATGACTGTGCAATCACACCCAAGTTACACAGCAGGCTCAACGATTCCCGTTAATATTGAATATGTCTCCCCTGATGAACAGAACGTTCTCAGAGTATTACCTAAAGGGGCTTGGCTGGCGCGAAACACCAGTGATGGGACAGTGACCCTATCCCCCGATGCAAACGCAGTATCAAAAGGCGAGGCACACCCTGTCATGAGTGGTGTAACTCATGTCATGCAGGGACCCGTGGCGAGAGTATTTCCCGGGTTAACGACTGAGAACATGCACAACTTCGCGGATA # Questionable array : NO Score: 5.55 # Score Detail : 1:0, 2:3, 3:0, 4:0.73, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.56, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCGCGTAGGCGGGGGTGAACCG # Alternate repeat : GTATTCCCCGCGTAGGTGGGGGTGAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTGGGCGGGGATGAACCG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-11.90,-13.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 892363-893831 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP018024.1 Alteromonas mediterranea strain CP48 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 892363 28 100.0 32 ............................ AGCCGGATGAGTAGCCGGTAATGGGGTGTGAC 892423 28 100.0 32 ............................ TCACTACGGCATTAGAAAAAGTCGTGAAGATG 892483 28 100.0 32 ............................ ATTGCTACTGAACAGCAGATTCAAGCGTTTAA 892543 28 100.0 32 ............................ TGTATATGTACCCGTTATCGTAACGCTTGCGT 892603 28 100.0 32 ............................ TTTCAGTTTAGATAATGCGAATTTCACAACAA 892663 28 100.0 32 ............................ ATACACAAGGGTTGGCCGTGCGCGTTTGGTGT 892723 28 100.0 32 ............................ TTACGTAAGAACCCAAGCTTTCTATTGTAAAC 892783 28 100.0 32 ............................ TGTACTTTCTATCGGGGGTAAAGACTCTACGG 892843 28 100.0 32 ............................ AAAACGTTGATTGGTCTGACGCTGACAGTTTA 892903 28 100.0 32 ............................ AGAGTGCGTAGGCAGACCTTCACCTTCGTTAT 892963 28 100.0 32 ............................ ATGCGTTGCGTCGGTGTTTTCCGCATGTTCAT 893023 28 100.0 33 ............................ TTTGCGGCACTATCCGGTCTTATCTCGAATATC 893084 28 100.0 32 ............................ GTACAGGGAAATAGCGAGAAGATACGGCGTAG 893144 28 100.0 32 ............................ AAGCTCTTCGCTGTGAAACTCTGCGACTAAGT 893204 28 100.0 32 ............................ AATGCAAAGCAACAGTTCGAAAGCAACTATAA 893264 28 100.0 32 ............................ GAATAGACATAACACATCGGGTTCTCTTGCTC 893324 28 100.0 32 ............................ TTACGTAACGACAAATCAGCGCGTCGAAATTC 893384 28 100.0 32 ............................ AGTAGCGCGAAGTAGTATGATTCGAAAGAAGC 893444 28 100.0 32 ............................ TTGGATGTTATCAGCATGGAAGAAATCTCCTG 893504 28 100.0 32 ............................ TTTCATGGCGGTGAATGGGTCAAAGTTACAGT 893564 28 100.0 32 ............................ GGTGCTGGGTTCACGTTATGGCTTTGTTGAGT 893624 28 96.4 32 ...........T................ ATTACGCACAGTTAGCAAAGTCGGGGATTAAG 893684 28 100.0 32 ............................ TAACAAGCGCGATGAATAATCAGGCTACACAG 893744 28 100.0 32 ............................ TTTAAGGTATGTTGGAACTGAACGTACTTTCC 893804 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 25 28 99.9 32 GTTCATGGCCGCACAGGCCACTTAGAAA # Left flank : GTAGATAAGTTGAAAGAGTTACAAGAATTGAATTGGCTGGGGCCTTTGATTGGTTATTGCAATGTGAGTGATATTTGCCCTATCCCAGAAATAGTTCAACACCGAAACGTTAGAGAGATACGTTCAAATTTAAGTAGCTCAAAGTTACGCCGGTTGGTTACAAGAGGGTCAATTGATAAGCAAGGAGAGAAACGCTATAAGATTAAAATGTTATCTAACAGTTTTGATAATCCTTACCTAGACATTTTGAGTAGCTCTACCGGGCAGGTTTATCGTAAGTTTTTCTATTTTGGAGAAGTTCAAGCGGAACCAATTGTTGGTCCTTTTGACTCATATGGCCTGAGTAAGTCAGCTACAATCCCGTGGTTTTAACCCATTAAAATTGTTCTTTAAAAAATTGCTATTAAAATAATGAGTTACGAAGGTTGGTGAAAATTTGGTGTTTTAGATATTTACGAGCCAATTCCTTGAGGCAACTCATTTTTTTGTGTTATTTTCGT # Right flank : ATACAGAACGGTAGCATTTCTCTAATGCTTAGAGCACCAATGGTAATTTAGGTTACGCGTATAAACTGTAGCACATATGTAGCACAGCAAAATATTGTTGGTAGTTACTATCGCTTGAAGCTAGAAAAAATGGTGGCCCCACCCTGACTTGAACAGGGGACCTGCCGATTATGAGTCGGATGCTCTAACCAACTGAGCTATGGGGCCATTTTGACATGTGCTGCGATGTTTTTTTATTGCAAATTGCTTTGCGTAACAATCACAAGCGAGCGCAAGTATAAGCAGTTTTATTTGCCTTGTCACGCCTCGCTAGTGGCTTTGTGATTTGTTTGCTTTATTTTTGTTCACTAAGCCGTGTTTTTCAGGTCTTACACCACCTTTTAATGTATCTTTATCTTATCACATCCTCTTACACTTAAAGCTTTGGTGTAACTACGTGGTATAAGCTTTCGCCATTGTTACTTTAAGCCGCACGTTATTATTGTTTCTGTTTGCTCGTG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCATGGCCGCACAGGCCACTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.80,-7.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA //