Array 1 13834-14825 **** Predicted by CRISPRDetect 2.4 *** >NZ_AYYL01000001.1 Ligilactobacillus ruminis DSM 20403 = NBRC 102161 strain DSM 20403 Scaffold1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 13834 36 86.1 39 A.....C.T.TT........................ GGTATCATATACCATACCAACGCCGGAAGAAACAATCGA G,A,A [13836,13838,13841] 13912 36 100.0 39 .................................... CGGATCGTACATGATGAATAATGGAGGCGCAAGAAAATA 13987 36 100.0 36 .................................... AATTGTTGAGATCGATTTTGATATTACGGAGTTTTT 14059 36 100.0 37 .................................... GAAGAATTAGGTGGTATCGAGCCCGAAGACGGCAAAC 14132 36 100.0 38 .................................... ATTTGCATTGAAATTAGTTCTTTTTGTTTTGTTACTTA 14206 36 100.0 39 .................................... ACGGAGTACGAACATGAATACCAAACAAACAAGTATTCA 14281 36 100.0 39 .................................... GACTTATTGGCTATGAGGATATTTTAGTGGAGCTTAAAG 14356 36 100.0 37 .................................... TATATTGATTGTGATAAAATATTTAAAGGTCGCTCGC 14429 36 100.0 36 .................................... GAAAAAGCAATCATTATCAATGAACACAATAAGGGC 14501 36 100.0 37 .................................... GTTTAGCTACATTGTACCTAATTTTTGGGTATTGACA 14574 36 100.0 38 .................................... AAGACGATCAACCATAAAGAAATATTGAGCATAATCTC 14648 36 100.0 35 .................................... AATTTGTCGGAAACGTTGTATCGCAAGAAAAACGG 14719 36 100.0 35 .................................... ATAGACAAAAGGAATTAGATAATAGTAAGTTATTA 14790 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================= ================== 14 36 99.0 37 GTTTTCGTCTCCTTCACTCGGAGATAGGTAATTATC # Left flank : GATCGGTCTTACCGCAAACGAGATAGATTTTCATATTATTTATATTTGAAAACATTTTGATCACGATACCAAAGATAGTTGTTCAAATTTTTGAGAATCTCTCTTAAAGCTCCATTGTAAATTCGAATTTCAACATCTTCCGTAATAATTTTCGCAGCCATTTCCCTAACTGGACGGTATGTTTCTTTAGGGCTTCGGTCAACAAGGTTGACTCCCGCGACGTCATCCAATTTCATATTTAAACCTCCGATTATACTTGATGTTTAAAGCATGCCAAGATATCGGAGGTTTATGAGGAACGCTTATTTAAAGACCGCTTACGATGGGGCGAATATCAGTATCCTCTTTTTATATACGGAAAACGCACCTGTCGGATTCAAGTGCGTTTAGCATTGACGAACATATTGACTGCGTCTCATCTTTTCATCTTGGTTGTAGCACGAAAAACTCTGCTATACAAAAGCTTGCTTTAAATAACAGAATTATCCCGTATTTTTTAC # Right flank : CCGACGCATCCAAAAACACCATAACAACGGCATTTTCATCCTGTCCAAGCCGCCCGGAACCCGGGCGAGACGTACCTAAATGGAACAGCACCGCCCAATTTGACGGCAGTACATCGTACCAATGCATCGAACATCTATATTTTATCCTATTTTTTATGAATATGCAACCCAGTCTCGAATTTTCAGTCAGTTCGCCCCTTGCATGTTGCCTTGACAATAATCAAAAGAGGCTGGAAAAAACTCCTTCTTCACTCCTGAATTAAATGAAATGCCGAACAAAGGCGTCGTAATTCGACTGATTTTGTCCGGCATTCTTTCAATTTTAAGACATGAAAACCCGCTTTTCTATAAAATACAGAACTGCGAATCTCCTTCTCAATCAGGGCTCCAAGGAGGGATTACGGGCAAATTGCCGATTTCTTAAGATTTGATCGTAAATTCCAGTCTTCTACGAAGAATTATCCCGAATACACAAAGTCCCGGATGAAATTTGCAGTTAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCGTCTCCTTCACTCGGAGATAGGTAATTATC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.30,-6.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [58.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0 Confidence: HIGH] # Array family : NA // Array 2 30886-32857 **** Predicted by CRISPRDetect 2.4 *** >NZ_AYYL01000001.1 Ligilactobacillus ruminis DSM 20403 = NBRC 102161 strain DSM 20403 Scaffold1, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 30886 33 100.0 34 ................................. TCATGCAACTTTTTTCTTTTACAAAATTATTACT 30953 33 100.0 33 ................................. TTTGAGTATCATGTAACGTGAGATGTTTTTCGT 31019 33 100.0 35 ................................. CAATATTGTTGAGCAATCTCTTGCTCTCATCATAT 31087 33 100.0 35 ................................. AAGAAGATATTGACCGTGGCTATGTTGACAAGCGA 31155 33 100.0 33 ................................. GTCATTAATGGTGTTATGGGTAACAAAGAATAT 31221 33 100.0 33 ................................. TGTCCGACTGTAATTAGAGGAGCTTATTAAAAC 31287 33 100.0 35 ................................. CCGGAATATCCTTTTGAGTGTCGTCAATGATCAAC 31355 33 100.0 33 ................................. TGTCCGACTGTAATTAGAGGAGCTTATTAAAAC 31421 33 100.0 36 ................................. CCTGCACTTCCTTGATGCCCACGTTTTCCAAGGGCT 31490 33 100.0 36 ................................. ATTGGCAGGTCAAAAGTTCAAAGTGTATACAGTAAT 31559 33 100.0 34 ................................. ACTTAATGTTGATCTGACAACACTTGGAGTTGAT 31626 33 100.0 34 ................................. AGATAGTGAGTGCGAGTGTAAGTATTTTCTAAAC 31693 33 100.0 33 ................................. GTTACCTGAATGACTTGCAACAGTCTGACCGTT 31759 33 100.0 33 ................................. GTGATGTCAACTCATTTTCATAACTTGTTTTAA 31825 33 100.0 34 ................................. ACAAACAACACTTACTAAAGTTAGAAACAATGCC 31892 33 100.0 36 ................................. CCTCAAGGTGACGTTGGTCCAGCTGGTGAAAAAGGG 31961 33 100.0 33 ................................. TGATTAAGTTCATCAATTGTCGGCTTGGAAATT 32027 33 100.0 35 ................................. TAACCATTAAAATAGAAAAAGTTGCGGTTAGGATT 32095 33 100.0 32 ................................. ACTGGCGAAGTCAGAACGATTTGTACCATATT 32160 33 100.0 33 ................................. GCTTGTGACGTTATATAATAAAAGAGTAGTAAA 32226 33 100.0 35 ................................. AATTACAATATGTAACCGACAGCACTCACTTTAGT 32294 33 100.0 33 ................................. TATGACGTCAATTAATGATGTCATGCAAGTTGC 32360 33 100.0 33 ................................. AAGCGCATCATTCTGATAACTTGCAACATCTAC 32426 33 100.0 33 ................................. GGAATTGCAATTGCACCACGTGTTCCCAATGCT 32492 33 100.0 34 ................................. GTGTGCCTAACGCAGAAAAACTCGCAATCTGTCT 32559 33 100.0 33 ................................. GCATTGCTTGTTGCATGAGCTTTATTGTTGCTT 32625 33 100.0 34 ................................. TCTCACGGTTGACAATGAGGACAAGGATTAGAAT 32692 33 100.0 33 ................................. GCATTGCTTGTTGCATGAGCTTTATTGTTGCTT 32758 33 100.0 34 ................................. TCTCACGGTTGACAATGAGGACAAGGATTAGAAT 32825 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ==================================== ================== 30 33 100.0 34 ATTTCAACTCACGCCCCCTATACAGAGGGCGAC # Left flank : CCCTTTCAAGCGACAAGACGACGCTTGAATCCTACGGGTTCGTCAGTCGGGAAGGATTTGAGGGGGCGTTTGGGGGATGAGGATAATGGTAGAACATAAGAAAGAGAGGTCTGGAAAGTTCCGTTCTATTTTCAAACTAAATTAATGCCGGACAAAGTCGGTCAACTTGCGGATGATTTGTTCGGTATTCTATTGATATGACTTAATTTTTATGCTTCATACATTCTGTGACGGACACATTCAGATAACATTTACAGATTTAGTATCATCAATTTGATTTTAATCGTAAGCGGAAATAAGCGTTTAAGCCTCTGATATCTTGATATGATTTAAACATCAAGTATATCTGAGGTTTATAAAAACACTTACGTTGGTTCATATATAAGTAAAAACCGGATGATGTTCACAAACTAATTTCGAATCATCCGGTTTTTTTGCTGAAAATACATTTTTTTCCAACCTTGCTACTATTCATAACATCATTGATATGACATTCAGCT # Right flank : CAGCAAAAAACAGGCAATATAGCCCAATTTTTCGCATCATAATAAATAACTATAATCCTTACAACCGAAGATTAAGAAATATATTATGAATATTATTCGGCAATCATTAAAAACAAGGTGCGAATACTTCGAAAAAATATGTTCACTTTTGATTCGCAAATATTTTGTTATAAAATAAGCGTACCTTTGATATCAAAACTTTCTTTAATTCCAATGTGTTCTATCTTGTTTTTGTACTTATCACCCAAATTATAGAAACGCAAACTATCTTCATCTTTATTTATAATACCTTCTAAAGTAGCCTTAACTTGTCGATATTCTGTAGAATTTAATTGACATTCAAAAACAGAATTTTGAACCCTTTGACCGTAATTAACGCACTCTTTTGCTACCTTTCTTAGTCGTTTTCTACCAGCCGATGTTTCAGTACTAACATCATATGCTATTAAAATAAGCATAACTAACTTCACCTACTTCCAGAAAAAAGGTGGATACTCATC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTCAACTCACGCCCCCTATACAGAGGGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.20,-5.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [71.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0.37,0.37 Confidence: NA] # Array family : NA //