Array 1 3078492-3076952 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP074098.1 Salmonella enterica subsp. enterica serovar Typhimurium strain C_cip chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 3078491 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 3078430 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 3078369 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 3078308 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 3078247 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 3078185 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 3078124 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 3078063 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 3078002 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 3077941 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 3077880 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 3077819 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 3077758 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 3077697 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 3077636 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 3077575 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 3077514 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 3077452 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 3077349 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 3077288 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 3077227 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 3077166 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 3077105 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 3077044 29 100.0 34 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAATT 3076981 29 96.6 0 A............................ | A [3076954] ========== ====== ====== ====== ============================= ========================================================================== ================== 25 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCTCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.10, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 3096610-3094624 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP074098.1 Salmonella enterica subsp. enterica serovar Typhimurium strain C_cip chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 3096609 29 96.6 32 ..A.......................... TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 3096548 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 3096487 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 3096426 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 3096365 29 100.0 32 ............................. CCGGACCTAAACCTGAAAAAACCGACGCCCAA 3096304 29 100.0 32 ............................. GCTCATTAAATAACTATATAACCCCCGGACTC 3096243 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 3096182 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 3096121 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 3096060 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 3095999 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 3095938 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 3095877 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 3095816 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 3095755 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 3095694 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 3095633 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 3095572 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 3095511 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 3095450 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 3095389 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 3095328 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 3095267 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 3095206 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 3095144 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 3095083 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 3095022 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 3094961 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 3094900 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 3094839 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 3094778 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 3094717 29 100.0 37 ............................. CGTTCATCGGCAGCGTCACGCAATATTGCGTGAAGAT 3094651 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ===================================== ================== 33 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGAGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //