Array 1 453414-455542 **** Predicted by CRISPRDetect 2.4 *** >NZ_RPAZ01000004.1 Cronobacter sakazakii strain AH02 Scaffold4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 453414 28 100.0 32 ............................ TGTGCGCACTCAGGTCATTCAGCCTGCGCTTG 453474 28 100.0 32 ............................ TGCCCGTGAAAAGACCAGTAATCATCCTCTTC 453534 28 100.0 33 ............................ CCGCAAAACTGGAGTGGGCCGCACAGGAGGGGT 453595 28 100.0 32 ............................ TGCCTGACCTGATGAAGGTGCGCGGCTCAATG 453655 28 100.0 32 ............................ GTCTCCGCCAGCGCGCCCCAGCCCTGCGCCGC 453715 28 96.4 32 .....................C...... CACTGATAGAGGCGCAGCTCGCGCATAACCTC 453775 28 100.0 32 ............................ TCTCCAGTGCCATCCTCAGCCCCGGCGCTATC 453835 28 100.0 32 ............................ AAAAACGTTTTGCCAGACCTGGCGGATGAGGC 453895 28 100.0 32 ............................ AAAACAATATGGCGAGCACGGCGGTTGCGGGA 453955 28 100.0 32 ............................ GTTGCCCGCTGGTCAAGAATTTTCAACGACAC 454015 28 100.0 32 ............................ ACCTGTTGCGCGTTCTGCGCGCGGGCCTGCGC 454075 28 100.0 32 ............................ AGGGAGGACACGCGGCGGCCGTCAACGTAGCG 454135 28 100.0 32 ............................ AGCGCGAGCTTGACATGTTAAATATCTAAGGA 454195 28 100.0 32 ............................ CCGCCGTCGCGCTGTTCTGCGCGGATTTCTCC 454255 28 100.0 32 ............................ TCCGTCCGATCGTTTAACGACTGGAAGGAAAG 454315 28 100.0 32 ............................ AGAGAAAGGTGCGAACGGCGTACCGGACAGGC 454375 28 100.0 32 ............................ CAGCGCTTCGGCGATAATCTTCTCGCCGCGCG 454435 28 100.0 32 ............................ ACCAGCTATCGACCGCGCCCACATCTGCGTCG 454495 28 100.0 32 ............................ GTTACGCCAAAATCAACGGGCGATAACTGCAG 454555 28 100.0 32 ............................ TTTGCCGGGATCGTCGCTCATCAGCATCATCA 454615 28 100.0 32 ............................ AGCTCCTGCTCACACGCCGACAGGTCGTCGTA 454675 28 100.0 32 ............................ ACACTATAGTCACCTAAATTCAGAGACGGTTT 454735 28 100.0 32 ............................ TATGGCTGCGACCGATATTGCAAAAATCGTTG 454795 28 100.0 32 ............................ CGTGCAGAACTGACCTCAACGCGCGCCGCGAC 454855 28 100.0 32 ............................ TCACCCACACTCCACGGCCCCAGGTGTAGCGA 454915 28 100.0 32 ............................ GTCGGCCCGCTGTAAATCAGGGTCCAGACGCC 454975 28 100.0 32 ............................ AGTTCGCGCACGAAGTCGGCTGTATAAAGCAC 455035 28 100.0 32 ............................ GCTGAGCAGATATCCGAAACTGACCGCCGTTG 455095 28 100.0 32 ............................ ATCTGTATCAGCCCAGGAACCGTAGTCGTCGT 455155 28 96.4 32 A........................... GGTGCGCTTAGTGCCCTGGACGGCCTCGATAT 455215 28 96.4 32 A........................... AGGATCACTCGATAAACGGCGGCGCAGACGTG 455275 28 96.4 32 A........................... TCCGATGCGGCTAAACAGGCGTATCAGGACAT 455335 28 96.4 32 A........................... AACAGCTCGGCGTCCTGGTAAATTCGTTCCCC 455395 28 100.0 32 ............................ AAACCTCGACCGCGATACTGGCAAGCTCGACA 455455 28 100.0 32 ............................ TGTAGGGGCGTACCCCTCCCGGCCAAAAAAAA 455515 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 36 28 99.5 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CAGAAAAACAAAAACCGCCGTCAGGTCGGCCATGTCTTCCGCTTCTGATTCACTGAGCGCAAAACTGTTAGTGGAAAAGGCCAACAGACAGCCCAGAAACATTAGCCTGACTACTTTTCTCATCACGTCTACCACTCGCCAACCAATACCCAACGATAGCACATTTCGTTCAGGCGCGACGAGGAGATTTCTTGCCTTTAACGCGCGGATAACTGCCTGTTTCAGGCGATGTTGTACGAACATCATCGACCAGAAAGCAGCAGAAAAATCCCTCTATACGATACGGCAATCGCGCGAGTTAACGCACCGAAGAGCAAACCACTGAACGAATGAAACGATAAAAGTGATGGGCGTTGCGCCTGGACGTCTAAACCCTTTTTTATGCTCCGCTTGTAAGGCGTTGATTTTTAATGCGTGCAGTTGTGGTGATAAAAAAGGGTTTCAGGCGTTAAAAGCAAAAATTTGTTTTCAATTCAGGCATTCCGGTAATATTCGCTCCT # Right flank : AACTCCCAGCTACCCGCCGGGGTTGGATACGCCGTCCACTGCACACCCGCAGTAAAAAATTTTAAGCCCGAAATAATGCTTTTATTATCGTTATATAAATAACGCCGCAATATCACGGTAAAATTATCCATAAAATTTATGGTTTCTGCTGTACGAGCTTTGCTGGAAAATTCGCGCCAGATATTAATGCGGTGCTAATTAGCCCATATAACGGCGATGACACGTAAGAACCACATTAACTACAGACATTTGCAGGTTTATTGCCTGTCACAGGGTGTCGTTAGAGTAATCAGTAATTATGTTTGATTGCAGATAATAGCGAAGGCCCTATAAAAGTTGACATTTAGTGTCATTCATTAATAAAGCGCGGGAAATGAAAGGGATGTCACGGCATATTTAAAGGCTTAATAATAGACTCATCTCTTATTTATTTTTCAAAGAAATATAAATACAGGAATCATCTAACGGAATGATGTAATGGATCGGAATGCCGTAACGCC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0.41 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 464252-465780 **** Predicted by CRISPRDetect 2.4 *** >NZ_RPAZ01000004.1 Cronobacter sakazakii strain AH02 Scaffold4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 464252 28 100.0 33 ............................ AGAAACTCGGGGTTGCGCTCTCGGTGAATAACC 464313 28 100.0 32 ............................ TGCCCATCCGGCACACCTTCGGCGAAGAAATT 464373 28 100.0 32 ............................ ATATCGTCAAGCCGGTTAATGAGGCGCTTGCC 464433 28 100.0 32 ............................ CTCTGCACCAGTGATGGAATTACCCATGGCAC 464493 28 100.0 32 ............................ TCGATCGCGTAATCGCGCGCGCGGTTGAGTGT 464553 28 100.0 32 ............................ GCGGATCACTTCGGTGGTTGGCGCGACGGCGA 464613 28 100.0 32 ............................ GCGTGGGGCTGGCGTTAAGGGGCAATGGCGCG 464673 28 100.0 32 ............................ TGGGTGTGTTTTGACAGGGACGCATTCGAACT 464733 28 100.0 32 ............................ TCCATCTTGTCCAGGCGCTTTTCCATCTCGTC 464793 28 100.0 32 ............................ ATCGCGTGTTGATGCTGGCCGCAGCATCTGCA 464853 28 100.0 32 ............................ TGCACGCCGGCGTTTTGTTTAAACGTCGCGTT 464913 28 100.0 32 ............................ GGCATTACGCCGGGTGAGGTTAAGTTCCGCTA 464973 28 100.0 32 ............................ TTTGCTCTATCCTCGTCAGATAAGGAATAAGC 465033 28 100.0 32 ............................ ACGTCGTCAGTTTCAAGCTCACTGCGAAGGAA 465093 28 100.0 32 ............................ CGCTACCGTGTGCTTCATTCACCGCGCGAAGT 465153 28 100.0 32 ............................ TTGTTGTGCAGGCCCGCGAACGCCTCTGTGTT 465213 28 100.0 32 ............................ GCGAACAGCAAACGGCCCGGAAACACCTCATT 465273 28 100.0 32 ............................ GTTTTAATGCCGAAGAAGGCACGGCTGACCTT 465333 28 100.0 32 ............................ TCTGGCGTTCGGTTTGCGGCGGTATCGTCCCA 465393 28 100.0 32 ............................ GTTGTGGTGAATGCGCAGGCTGATGCGCTGAT 465453 28 100.0 32 ............................ TCAGAATGGCCCAGCGATGACGGCTACCGAAG 465513 28 100.0 32 ............................ GTACGACCCGCAGATTGCTGAGTACGAGCAAA 465573 28 100.0 32 ............................ AGCGCTGCTATCAGCTCAAGAACGGCAGCGGG 465633 28 100.0 32 ............................ AATGGGGTCATTATCGGTTCCTCCGTGATGCC 465693 28 96.4 31 ......................A..... TCGAACACAGCGACGCCGTTCCCGTCGCCGC 465752 27 92.9 0 ........................-..T | T,G [465772,465775] ========== ====== ====== ====== ============================ ================================= ================== 26 28 99.6 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CGGCGCTGGCGGAATTAGAGGCTACGCGCTGGCGGGCGGGTTTGCAGGATTACTGCCAGAGCAGCGCGATATTACCCGTGCCACTGGTTCAGGGCTGGCGCACCGTGACGCGCGTGCAGGTGAAAAGCAACCCCGAACGCCTGCTGCGCCGCTCAGTGCGTAAAGGCTGGCTGACTGAAGAAGAGGCACAGCAGCGGCTTTCTGGTTTACAGGAGCAACAAACCGCTCTGCCCTGGATTCAGGTTAAAAGCCTCTCCAGCGGCCAGCAATACCGGCTGTTTATCCAGCACGGCGCACTTCAGCCCACGCCCGTCAGCGGCACCTTCAGCAGTTACGGGTTAAGCGCCAGCGCCACCATCCCCTGGTTCTGACCCTTTTTAAATACGTCTCGCTAACCTGTTGATTTTTATAATGGGTTAGTGAGGCGTTGAAAAAAGGGTTTTAAGAAGTAAGCAGCGTTTATATTTTTATAAACAATGGGTTAAGAATTTTTGTCTTCA # Right flank : TCACAGCGAATTCCCTCGCCGTCACACTTGACCTTCCTGCAAGGGGAGGGTTTAAGCTCAACGGGTGCACGTTGACGATAAGGACGGGAAGATGCAACGCCGAGAGTTTATCAAGTACACCGCCGCGCTGGGGGCGCTCAGCGCGCTGCCGACATGGAGCCGGGCCGCATTTGCCCCAGAGCAACCCGCGCTGCCCATCCCCGCGCTGCTGACGCCGGACGCCCGCAGCAGCATTCAGCTGACGGTTCAGGCCGGCAAAACCGCGTTTGCCGGTAAAAATGTCACGACCTGGGGATATAACGGCTCGCTGCTGGGCCCGGCGATTAAGCTGCGCCAGGGCACGCCGGTCAATATCAATATCCGCAATAACCTCGCCGAAGAGACCACGGTGCACTGGCACGGTCTGGAAGTGCCGGGCGCGGTGGACGGCGGGCCGCAGGGAATTATCGCGCCGGGGCAGACGCGCAGCGTAAGCTTCACGCCTGAGCAGCGCGCCGCGA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 816067-814817 **** Predicted by CRISPRDetect 2.4 *** >NZ_RPAZ01000001.1 Cronobacter sakazakii strain AH02 Scaffold1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 816066 29 93.1 32 .T..........C................ CGAGAGGTAGTAAGCAGCTTCTGTAAGCTCAT 816005 29 93.1 32 .T..........C................ CCCGCACCAGTTCTTACAACCGAGGGACGCCT 815944 29 93.1 32 .T..........C................ GAAACAGCCAATCAATGATGCCTACATCCGGT 815883 29 93.1 32 .T..........C................ CCCCCTCTGGTTTTGAGGAAGAAAATGATGGC 815822 29 93.1 32 .T..........C................ ACCTTCGACACCGGGTTTCAGACTGACCAGCC 815761 29 100.0 32 ............................. ATATCGTCCGCGTTATCGCCGTTTTCTTCGCA 815700 29 100.0 33 ............................. ATATTGACCGCCACGTATGACGCCGAGGCAGAC 815638 29 100.0 32 ............................. CTCGTCATACAGGGCATTTGCAAGACGGGTAT 815577 29 100.0 32 ............................. TGAAGTTATCATGCCAACGCCATCTTGACGAT 815516 29 100.0 32 ............................. CATCTTGTTAAAGTCGTCGTGATCGGGCCAGC 815455 29 100.0 32 ............................. AGATCCTGAATGAGACCGAGCAGAACACCATC 815394 29 100.0 32 ............................. ATTTCATTGGTAACTGAGTTGACTGACGAGGA 815333 29 100.0 32 ............................. GATTACCGCCATCTCGTCACGCAACTTTTCAT 815272 29 100.0 32 ............................. TGGGAACGCATTCTGAAGGAAGACCCGGCATC 815211 29 100.0 32 ............................. GGCCACATCATCAAACTGGATACCGTGTTTAC 815150 29 100.0 32 ............................. GCCGCATTGCAGGAACCACTTATTTTAAACTG 815089 29 100.0 32 ............................. CGCTGCAATGCATTCTCAGAGCTGATTTTATT 815028 29 100.0 32 ............................. CGTCGTCACTCGTTGGTAGTGCCAGCGCCGCA 814967 29 100.0 32 ............................. CTCAGCGATACGCGCGTCTTTCTCCCTGCAAT 814906 29 93.1 32 ............C.....C.......... GCACCAGCATTAACGCCGAATACATAATTATG 814845 29 96.6 0 .T........................... | ========== ====== ====== ====== ============================= ================================= ================== 21 29 97.9 32 GAGTTCCCCGCGTGAGCGGGGATAAACCG # Left flank : ACCGTGCTGGCCGCCGGTGAAATCGAACCACCGCAGCCCGCGGCGGACATGCTGCCGCCCGCGATACCGCAAGCCGATTCGCTGGCGGAAGCCGGTTTCAGGAGCCGCTGATGAGCATGCTGGTCGTCGTGACGGAAAGCGTCCCGCCCCGGCTTCGCGGACGGCTCGCCATCTGGCTGCTGGAGCTGCGCGCCGGGGTTTACGTGGGTGACGTATCGCGTCGGGTGCGTGAAATGATCTGGCATCAGATAACCGAGTTAGCGGAGGAGGGCAGTGTGGTGATGGCCTGGGCCACCAATAATGAATCCGGTTTCGATTTTCAGACGTTCGGCGTTAACCGTCGTATCCCGGTGGATTTAGACGGCCTGCGCCTTGTCTCGTTTTTACCGCTTGAAAATCAGTAGGTTATTCGCTCTTTAACAATGCGAGATTGTGAACCAAACGTTGGTAGGATGTTGTTGCACGAAAAAGTGTAATAGATACAAGTATATAGTTTTAGA # Right flank : TTATTGAGTAGAATCGTCTGCCTTGGTGGCTGCGCTTCGCTTACCCACCCTACATATAAACTGGCGGGCCTGCCCTTAACCGATCCACAAAAACTTCCCGCACCTGCTCTCGATTGCGCAATAAACCGGCATACGGCGCGCGTTGGGTTGCAATCGCCGGGGGCAACAGACATAATGCGCCCTGCGCGTTTAACGACGCTCTCAATGGGGGCCCTGTTGGTTCTCCCGCAACGCTACTCTGTTTACCAGGTCAGGTCCGGAAGGAAGCAGCCAAGGCAGATGACGTGTGTGCCGGGATGTAGCTGGCAGGGCCCCCACCCATTTCTGCCCTAAGTCCTTTTTTCAGCTTTATCCTGGTGATGAAACATCATAAGAGGTGTATTAACTCATCCTGGATACGAGCGGCCTTTGGCTGCTAATATCAGGTGCGGTTATTTAATATAACGTTTATGTTTTCATTTATGAGCACTCAGAAATGGATAATTCACTCAGGCGATTAC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGTGAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCGAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 845496-842354 **** Predicted by CRISPRDetect 2.4 *** >NZ_RPAZ01000001.1 Cronobacter sakazakii strain AH02 Scaffold1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 845495 29 100.0 32 ............................. CAATCGAGGAATTAGTGACTAAACAGGCAGCC 845434 29 100.0 32 ............................. ACATCTTCATCCTAGCCGGTAACTATCTGCAA 845373 29 100.0 32 ............................. CCAACTCAAACGCCGAGCCGATTCACGTATCT 845312 29 100.0 32 ............................. CCATTAACATCTATCAGCGCAAACATACCGGA 845251 29 100.0 32 ............................. CCTGCCGTTGCGCGCGGGTGGCGGCGCGATAC 845190 29 100.0 32 ............................. CATCTACCACCCGGCGCGGTGGTCGTGATTGT 845129 29 100.0 32 ............................. GAGTCGGTTCCGCGCTTCAACGCAAGGAAAAA 845068 29 100.0 32 ............................. AGCTTTACCGCGCTCAAGGATTTCCCGAATGG 845007 29 100.0 32 ............................. AATCTCGCGTCTGCATTGTCGCGCCAGTTATC 844946 29 100.0 32 ............................. GACTTTGCCACGATACCGAATGCGATCATGTC 844885 29 100.0 32 ............................. TATGACATACTATGAGAGCGCAGCGGGCGAGG 844824 29 100.0 32 ............................. AATCGACACCTTCTTACCGTCCACCAGCGTAT 844763 29 100.0 32 ............................. CCTGGAGTCGGGCGAAGTCGCGTTATATACCG 844702 29 100.0 32 ............................. CTGCGTTCGTCGTCGAGCTGCAGCACGTTGTT 844641 29 100.0 32 ............................. GTTCGCGCAACTCAGCGAGCGGCGGCAGCCGA 844580 29 100.0 32 ............................. GCAGGCTCAGTGGTCAGAAGCTGAATGGTCGA 844519 29 100.0 32 ............................. CAGCCAGCGCCGGAAATAAACGTTCATATCGA 844458 29 100.0 32 ............................. AAACTGACTCTACAACACCTGGATACCTGGGT 844397 29 100.0 32 ............................. GACGCTTTGACGGAATGACGGACATGTATGAA 844336 29 100.0 32 ............................. TGCTGCAAAAAGAATTACTTGGCACCGATGAT 844275 29 96.6 32 ......................G...... ATCCGCGGGGAGGAAACACTGACGGTACATAC 844214 29 100.0 32 ............................. GCCATGAGAGAGACGGCATAGACCTGAATCAG 844153 29 100.0 32 ............................. GCTGACGTTCTGCAGCCATGCGCCTACGTGAT 844092 29 100.0 32 ............................. ATCCAGCGTGAGTAATATATAGCTATGTTATT 844031 29 96.6 32 ............................T GAAACGGCGGTTACCCTGCCGGGAACGTGGCG 843970 29 100.0 32 ............................. CAGTCTCTGGCAACCTCCCAGCATTCGCTACT 843909 29 100.0 32 ............................. CGGTCCATTTTCTTACCAAAACCGTATGTTTT 843848 29 100.0 32 ............................. CAATTCTCCCGCCGCGGGTATACCGCGGCAAA 843787 29 100.0 32 ............................. CTGGTCAGCGTAAACGCCGCAAATACGACAAA 843726 29 100.0 32 ............................. GCAACTTTTAGCGCCGCATTCTCCGCCGCTAG 843665 29 100.0 32 ............................. TAGGGAATCAGCGCCAGCATTTTGCGCTTGTC 843604 29 100.0 32 ............................. AAGTGATAACAGTGCTATTGCCGTTTTTTGAA 843543 29 100.0 32 ............................. GCTAGCCAGGTCGTTGCCAGCTTCATGCCCTC 843482 29 100.0 32 ............................. AGCGAGACGGTCGCAGCGTGTAATCTACAGTC 843421 29 100.0 32 ............................. ACAACTGGCAACTGGTGGATATCGAGACCACT 843360 29 100.0 32 ............................. TGCGTGCCACGGGTAAGGAATACGCCAGCTTT 843299 29 100.0 32 ............................. GGGTGGCATTTAACCCCAAATACCCGCCGCCA 843238 29 96.6 32 ..A.......................... GCAGATCCAGGTAACGTTGCGCTGGCGCTGGT 843177 29 100.0 32 ............................. AATGCGATCATCGATATCGGGCAGGCTGTCAT 843116 29 100.0 32 ............................. GTGTGAGACTTTTGCGCCGCCTAACTTGATCG 843055 29 100.0 32 ............................. CAGGAGATCGCCAAATCAACGCCCAGCCAGAC 842994 29 100.0 32 ............................. CCGCGGCGGTATTCCCTGCAGGCCTGGTTATT 842933 29 100.0 32 ............................. GCCATCGGACGCTTCTGCCAATCTTAACAGGA 842872 29 100.0 32 ............................. GCGCGACGTATCGCACCGTTGCGCAGGATACC 842811 29 100.0 32 ............................. GTTATCATCTGAATGCCTAAAATTGAGGAATT 842750 29 96.6 32 .C........................... GCGGTTGCACTCCACCGCGAAACCCTCGAACC 842689 29 100.0 32 ............................. TTTTCGAAATTGAGCATATTTAACCTATGATT 842628 29 93.1 32 ........T..A................. ATTTTCGAGCAAAGAGGCAACAGGTCTTCATC 842567 29 96.6 32 ...........A................. ATCGCCAGTATTTTCAACGTGCCGGCGCACAT 842506 29 96.6 33 .C........................... AACGCTCGCAGCAGGTACGCTGCAGCAACCAGC 842444 29 93.1 33 .C..........T................ AACGCTCGCAGCAGGTACGCTGCAGCAACCAGC 842382 29 96.6 0 .C........................... | ========== ====== ====== ====== ============================= ================================= ================== 52 29 99.3 32 CTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ATGAAAGCTTTAAATGGATGATGGCGAACAACATCGCGTTTATTGTCGCCAATATCAATATCAACTACCGTCGGCCCGCCGTGCTTGGCGATCTGCTGACTGTGACGAGCCAGGTGAAGCAGCTTAACGGTAAAAGCGGGGTCTTAAGCCAGGTCATTACGCTTGAGCCGGAAGGCGAAGTGGTCGCCGATGCGCTGATCACCTTCGTGTGTATCGATCTGAAAACGCAGAAAGCCTTACCGATTGAGGGCGAGCTGCGTGAAAAACTGGAAAAAATCACAGGGTAAATTCTGCAATAGTGGCGCTTGTGCTGGCAATCATGGATTTATCACCGCACAGGGTGAACAATCCGGTAGATGTTAACAGCCCACAAGCGTCGCGAAAAAACGCCTTCAAAATCAACAGGGCAGCCGTTCTTTAACAAGATGGGTTGTTGTAAAAATGTTGGTAGGATGTGGAAGGCGAAAAAATGCCATTCAGTACAAAGGGTTACTTTTAGT # Right flank : AACGCTGACCTGGCGAACACGCTGCAAAATCTCCGTGCCCCGCCAGCCGTAATAAACCGCCCAAGCTCTTCGCGCCTGTCAATCACCGCCCCCTTTCCCGCCACAATCTTCAGCAACGTTTATACTTCAAAGCCCTTATTAAATTTTGAACACTGCGCAACGAAGGAGAGGCTATGCGAGTACACCATCTCAACTGCGGTTGTATGTGTCCTTTGGGCGGCGCGCTGTACGATGGCTTCAGTAAAGGGCTGCATGCGCACCTCATCTGCCACTGCCTGCTGATTGAAACCGACCATCACGGGCTGGTGCTGGTGGATACCGGCTTTGGCTGTGACGATATGCGCCATCCGCGCCGCCGTTTACCACTCTTTTTCCGGGCGCTGAATAATATCCAGTACCGGGAATCATTAACGGCGCTGCACCATATTAAAGCGCTCGGCTTTAAGCCGGAGGACGTCCGACACATTGTGCTGACGCATCTGGATTTCGATCATGCGGGT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //