Array 1 151851-152062 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV821945.1 Corynebacterium sp. HMSC056F09 Scaffold402, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 151851 29 96.6 32 ............................G CAGACCTCTATGGTCACCATCGCAGACGGCGA 151912 29 100.0 32 ............................. GGCTGCTAAGTCGTCCGCGTCGGCTGCCAAGG 151973 29 100.0 32 ............................. CATGCTGAAACAACCTCAAATTTACCGGCCAC 152034 29 96.6 0 ............................N | ========== ====== ====== ====== ============================= ================================ ================== 4 29 98.3 32 GTGCTCCCCGCGTGAGCGGGGATGAGCCC # Left flank : AGTCGAACTATGTAAAGACGGAAGAGCGTTATTGGTCTATTCGGCAGCCAATGAACAAGGCCTCGAGTTTAGAACGCATCGGCACCATTGGCAGCCAACAGATTTCGATGGAGTCACTCTTATGGTTCGTCCTTCTCCTGGACGCAAGCCCGTGCAGAGCAGAACTGGTTGGTCGCGAGCACGTCAGGTCCGTTCTGCCTATCGGAAGCAGAAAGGGAAATAGAAAGGACTGGGACGCAACACAACCTATTCTTTGTCTTTGCGAAGTCGTATGTAAACTGAGCCCAGGGCTCCTTAACTCGCTGTTCAACAAGGGTGCTCCCCGCGTGAGCGGGGATGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCTCCCCGCGTGAGCGGGGATGAGCCGGCGCGTTGAAGTTAGGTCCATCACCGCCGACA # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCTCCCCGCGTGAGCGGGGATGAGCCCAGGTCGGCATCACCCACCTAGAAGGTGGTGACGTGCTCCCCGCGTGAGCGGGGATGAGCCCCAGTTGGTCGTGATGAATGAGAACTCAATAGTGTGCTCCCCGCGTGAGCGGGGATGAGCCCTACACCTGGACAAGCATTACCCAGGGCACGCCGTGCTCCCCGCGTGAGCGGGGATGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCTCCCCGCGTGAGCGGGGATGAGCCCGTCTACATGGATGACACGATAGACGACTGGCGGTGCTCCCCGCGTGAGCGGGGATGAGCCCCATC # Questionable array : NO Score: 5.77 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGTGAGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGTGAGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: F [33.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 152160-152310 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV821945.1 Corynebacterium sp. HMSC056F09 Scaffold402, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 152160 29 93.1 32 NN........................... AGGTCGGCATCACCCACCTAGAAGGTGGTGAC 152221 29 100.0 32 ............................. CAGTTGGTCGTGATGAATGAGAACTCAATAGT 152282 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 3 29 97.7 32 GTGCTCCCCGCGTGAGCGGGGATGAGCCC # Left flank : ACAAGGGTGCTCCCCGCGTGAGCGGGGATGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCTCCCCGCGTGAGCGGGGATGAGCCGGCGCGTTGAAGTTAGGTCCATCACCGCCGACAGTGCTCCCCGCGTGAGCGGGGATGAGCCGCAGACCTCTATGGTCACCATCGCAGACGGCGAGTGCTCCCCGCGTGAGCGGGGATGAGCCCGGCTGCTAAGTCGTCCGCGTCGGCTGCCAAGGGTGCTCCCCGCGTGAGCGGGGATGAGCCCCATGCTGAAACAACCTCAAATTTACCGGCCACGTGCTCCCCGCGTGAGCGGGGATGAGCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : CTACACCTGGACAAGCATTACCCAGGGCACGCCGTGCTCCCCGCGTGAGCGGGGATGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCTCCCCGCGTGAGCGGGGATGAGCCCGTCTACATGGATGACACGATAGACGACTGGCGGTGCTCCCCGCGTGAGCGGGGATGAGCCCCATCCGTCAGCACCGTCTTACGGTCGCGGCTCGTGCTCCCCGCGTGAGCGGGGATGAGCCCGGGTGGGTGCACTCACCATGCATGCCGTCCCCGTGCTCCCCGCGTGAGCGGGGATGAGCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCTCCCCGCGTGAGCGGGGATGAGCCCTCA # Questionable array : NO Score: 5.56 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGTGAGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGTGAGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,1.05 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], // Array 3 152468-152679 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV821945.1 Corynebacterium sp. HMSC056F09 Scaffold402, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 152468 29 96.6 32 N............................ GTCTACATGGATGACACGATAGACGACTGGCG 152529 29 100.0 32 ............................. CATCCGTCAGCACCGTCTTACGGTCGCGGCTC 152590 29 100.0 32 ............................. GGGTGGGTGCACTCACCATGCATGCCGTCCCC 152651 29 96.6 0 ............................N | ========== ====== ====== ====== ============================= ================================ ================== 4 29 98.3 32 GTGCTCCCCGCGTGAGCGGGGATGAGCCC # Left flank : CAAGGGTGCTCCCCGCGTGAGCGGGGATGAGCCCCATGCTGAAACAACCTCAAATTTACCGGCCACGTGCTCCCCGCGTGAGCGGGGATGAGCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCTCCCCGCGTGAGCGGGGATGAGCCCAGGTCGGCATCACCCACCTAGAAGGTGGTGACGTGCTCCCCGCGTGAGCGGGGATGAGCCCCAGTTGGTCGTGATGAATGAGAACTCAATAGTGTGCTCCCCGCGTGAGCGGGGATGAGCCCTACACCTGGACAAGCATTACCCAGGGCACGCCGTGCTCCCCGCGTGAGCGGGGATGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCTCCCCGCGTGAGCGGGGATGAGCCCTCATCACCAAAGGCACCACACGCCTCTACAACGTGCTCCCCGCGTGAGCGGGGATGAGCCCCATCCGTCAGCACCGTCTTACGGTCGCGGCTCGTGCTCCCCGCGTGAGCGGGGGTGAGCCCCACATGGAGGTAACTACATGGCTGTCACACCGGTGCTCCCCGCGTGAGCGGGGATGAGCCCCATCCGTCAGCACCGTCTTACGGTCGCGGCTCGTGCTCCCCGCGTGAGCGGGGATGAGCCCCACATGGAGGTAACTACATGGCTGTCACACCGGTGCTCCCCGCGTGAGCGGGGATGAGCCCGGAAAGCTCTACCTCACCCGTTTCGAGCTCGCGTGCTCCCCGCGTGAGCGGGGATGAGCC # Questionable array : NO Score: 5.77 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGTGAGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGTGAGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.50,-8.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 152839-153170 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV821945.1 Corynebacterium sp. HMSC056F09 Scaffold402, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 152839 29 100.0 32 ............................. CATCCGTCAGCACCGTCTTACGGTCGCGGCTC 152900 29 96.6 32 .....................G....... CACATGGAGGTAACTACATGGCTGTCACACCG 152961 29 100.0 32 ............................. CATCCGTCAGCACCGTCTTACGGTCGCGGCTC 153022 29 100.0 32 ............................. CACATGGAGGTAACTACATGGCTGTCACACCG 153083 29 100.0 32 ............................. GGAAAGCTCTACCTCACCCGTTTCGAGCTCGC 153144 27 93.1 0 ...........................-- | Deletion [153171] ========== ====== ====== ====== ============================= ================================ ================== 6 29 98.3 32 GTGCTCCCCGCGTGAGCGGGGATGAGCCC # Left flank : CGCCGTGCTCCCCGCGTGAGCGGGGATGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCTCCCCGCGTGAGCGGGGATGAGCCCGTCTACATGGATGACACGATAGACGACTGGCGGTGCTCCCCGCGTGAGCGGGGATGAGCCCCATCCGTCAGCACCGTCTTACGGTCGCGGCTCGTGCTCCCCGCGTGAGCGGGGATGAGCCCGGGTGGGTGCACTCACCATGCATGCCGTCCCCGTGCTCCCCGCGTGAGCGGGGATGAGCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCTCCCCGCGTGAGCGGGGATGAGCCCTCATCACCAAAGGCACCACACGCCTCTACAAC # Right flank : C # Questionable array : NO Score: 5.77 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGTGAGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGTGAGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [36.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 15200-15050 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV821947.1 Corynebacterium sp. HMSC056F09 Scaffold412, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 15199 29 93.1 31 NN........................... CCAGAGTGGATGGGTGAAATCACCAGCCTCG 15139 29 100.0 32 ............................. TCGAGTGAACCGCTCCGCGTGCCCACGATGAC 15078 29 75.9 0 ....................A.GT.CTTG | ========== ====== ====== ====== ============================= ================================ ================== 3 29 89.7 32 GTGCTCCCCGCGTGAGCGGGGATGAGCCC # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTGCTCCCCGCGTGAGCGGGGATGAGCCCAAAGACTGCCGCTGCGGGTCCCACCACCTCGCGTGCTCCCCGCGTGAGCGGGGATGAGCCGGATGAAACCACCGGCAAGGTCACCATCACTGAGTGCTCCCCGCGTGAGCGGGGATGAGCCCCCAAACAACGCTAGTAAGGAGCGTGAGAGCTAGTGCTCCCCGCGTGAGCGGGGATGAGCCGCCCTTGGCCGCCAGCCACGCGCCCTCGTTGACGTGCTCCCCGCGTGAGCGGGGATGAGCCCCACATCCGCCAGTGGCGGCTACGCTACCCAGAGTGCTCCCCGCGTGAGCGGGGATGAGCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : GTTCAGGAAATTATTCCTTTCGAAATAGCAATTCCTTGCTCCTCATGCTTTTCAGTGTTGGGGGGTTCAATTTTCATGCTGCCTCTGTAGGCTTGCTTTCGGAACCGCAATACAGTCATCGAGTACCTCCCGTTGCGCTAGGGTCAGTATCTGTGATTCAGGACGTCGACCCGCTCATCCATTCCCTGTACCAGGTCTTTGACCTCATTGGTGTGGTACTCAACGGCATCATCGGTGGCACGATTGCGCGCCGCAGGAAATTCGACATCATTGGCTTCGTCTTTCTGGCGCTCTTTTCGGCGCTGGCGGGCGGCATGATTCGTGACATGCTGATCTCTCATGGCCCAGCAGCCGCTATTTCTGATCCGTGGTATCTCACTCTGGCATGCGTGGGTGCGCTTATTGCTTTCTTGATGGACCTCAAAGGCAAGGTCTGGGAGATCTTCCTTGAGCACGCGGATGCTGTCATCTTGGGTGTGTGGTGCACGACTGGCTGTGTG # Questionable array : NO Score: 4.85 # Score Detail : 1:0, 2:3, 3:0, 4:0.49, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGTGAGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGTGAGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.05,4.5 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], // Array 2 15631-15297 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV821947.1 Corynebacterium sp. HMSC056F09 Scaffold412, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 15630 29 100.0 32 ............................. AAAGACTGCCGCTGCGGGTCCCACCACCTCGC 15569 29 96.6 32 ............................G GATGAAACCACCGGCAAGGTCACCATCACTGA 15508 29 100.0 32 ............................. CCAAACAACGCTAGTAAGGAGCGTGAGAGCTA 15447 29 96.6 32 ............................G CCCTTGGCCGCCAGCCACGCGCCCTCGTTGAC 15386 29 100.0 32 ............................. CACATCCGCCAGTGGCGGCTACGCTACCCAGA 15325 29 96.6 0 ............................N | ========== ====== ====== ====== ============================= ================================ ================== 6 29 98.3 32 GTGCTCCCCGCGTGAGCGGGGATGAGCCC # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCTCCCCGCGTGAGCGGGGATGAGCCGCTGCCGTGGAGCATGGTGTCTGATGATGGGCTGTGCTCCCCGCGTGAGCGGGGATGAGCCCCCAATCCCAGCTAGTGCCAAGAACCTCAGTGAGTGCTCCCCGCGTGAGCGGGGATGAGCCGTCAACGGCTACACCGAAGCAGACCGCCCATTGGTGCTCCCCGCGTGAGCGGGGATGAGCCCGTGATTTGGATTCAGCCCGGTGGTGAGAAGTTGTGCTCCCCGCGTGAGCGGGGATGAGCCGAGCTTTGCCACACCTTCGCGGTCTAGGTGGAAGTGCTCCCCGCGTGAGCGGGGATGAGCCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCTCCCCGCGTGAGCGGGGATGAGCCCCCAGAGTGGATGGGTGAAATCACCAGCCTCGGTGCTCCCCGCGTGAGCGGGGATGAGCCCTCGAGTGAACCGCTCCGCGTGCCCACGATGACGTGCTCCCCGCGTGAGCGGGAAGTACTTGGTTCAGGAAATTATTCCTTTCGAAATAGCAATTCCTTGCTCCTCATGCTTTTCAGTGTTGGGGGGTTCAATTTTCATGCTGCCTCTGTAGGCTTGCTTTCGGAACCGCAATACAGTCATCGAGTACCTCCCGTTGCGCTAGGGTCAGTATCTGTGATTCAGGACGTCGACCCGCTCATCCATTCCCTGTACCAGGTCTTTGACCTCATTGGTGTGGTACTCAACGGCATCATCGGTGGCACGATTGCGCGCCG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGTGAGCGGGGATGAGCCC # Alternate repeat : GTGCTCCCCGCGTGAGCGGGGATGAGCCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGTGAGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 16004-15731 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV821947.1 Corynebacterium sp. HMSC056F09 Scaffold412, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 16003 29 96.6 32 ............................C CCAATCCCAGCTAGTGCCAAGAACCTCAGTGA 15942 29 100.0 32 ............................. TCAACGGCTACACCGAAGCAGACCGCCCATTG 15881 29 96.6 32 ............................C GTGATTTGGATTCAGCCCGGTGGTGAGAAGTT 15820 29 100.0 32 ............................. AGCTTTGCCACACCTTCGCGGTCTAGGTGGAA 15759 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 5 29 98.6 32 GTGCTCCCCGCGTGAGCGGGGATGAGCCG # Left flank : TGCTCCCCGCGTGAGCGGGGATGAGCCCAGCAGCCACCGCATGACCACCAGAAGCCTGCGGTGCTCCCCGCGTGAGCGGGGATGAGCCACCGCCCACCCTTTGCCGCTGTAGCCCTGCGGGGGTGCTCCCCGCGTGAGCGGGGATGAGCCGAAAACCGTTGACCGCATGAATGCCATGGCTAAGTGCTCCCCGCGTGAGCGGGGATGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCTCCCCGCGTGAGCGGGGATGAGCCGCTGCCGTGGAGCATGGTGTCTGATGATGGGC # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTGCTCCCCGCGTGAGCGGGGATGAGCCCAAAGACTGCCGCTGCGGGTCCCACCACCTCGCGTGCTCCCCGCGTGAGCGGGGATGAGCCGGATGAAACCACCGGCAAGGTCACCATCACTGAGTGCTCCCCGCGTGAGCGGGGATGAGCCCCCAAACAACGCTAGTAAGGAGCGTGAGAGCTAGTGCTCCCCGCGTGAGCGGGGATGAGCCGCCCTTGGCCGCCAGCCACGCGCCCTCGTTGACGTGCTCCCCGCGTGAGCGGGGATGAGCCCCACATCCGCCAGTGGCGGCTACGCTACCCAGAGTGCTCCCCGCGTGAGCGGGGATGAGCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGTGAGCGGGGATGAGCCG # Alternate repeat : GTGCTCCCCGCGTGAGCGGGGATGAGCCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGTGAGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 16373-16222 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV821947.1 Corynebacterium sp. HMSC056F09 Scaffold412, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 16372 28 93.1 32 -...........................C AGCAGCCACCGCATGACCACCAGAAGCCTGCG 16312 29 100.0 33 ............................. CCGCCCACCCTTTGCCGCTGTAGCCCTGCGGGG 16250 29 96.6 0 ............................G | ========== ====== ====== ====== ============================= ================================= ================== 3 29 96.6 33 GTGCTCCCCGCGTGAGCGGGGATGAGCCA # Left flank : | # Right flank : AAAACCGTTGACCGCATGAATGCCATGGCTAAGTGCTCCCCGCGTGAGCGGGGATGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCTCCCCGCGTGAGCGGGGATGAGCCGCTGCCGTGGAGCATGGTGTCTGATGATGGGCTGTGCTCCCCGCGTGAGCGGGGATGAGCCCCCAATCCCAGCTAGTGCCAAGAACCTCAGTGAGTGCTCCCCGCGTGAGCGGGGATGAGCCGTCAACGGCTACACCGAAGCAGACCGCCCATTGGTGCTCCCCGCGTGAGCGGGGATGAGCCCGTGATTTGGATTCAGCCCGGTGGTGAGAAGTTGTGCTCCCCGCGTGAGCGGGGATGAGCCGAGCTTTGCCACACCTTCGCGGTCTAGGTGGAAGTGCTCCCCGCGTGAGCGGGGATGAGCCGNNNNNNNNN # Questionable array : NO Score: 5.50 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGTGAGCGGGGATGAGCCA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGTGAGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-14.00,-14.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [40.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.05,4.87 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], // Array 1 1-395 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV821974.1 Corynebacterium sp. HMSC056F09 Scaffold683, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1 28 96.6 32 -............................ CAGCAGCTGCTTGACGAAATCATGCGTCGCTC 61 29 100.0 32 ............................. GGTGACGGGCACACGCCACGCACCACGCCTAA 122 29 100.0 32 ............................. ACGACGGTCTGGTGGTGCCCTGGGGTGAGGCT 183 29 96.6 32 ............................G GCTGGTAAGCCGGGTAGGGATGGTAAGCCGGG 244 29 96.6 32 ............................T ACGCCCGCCACCTCGCCATCCTCACAGAGAAA 305 29 100.0 33 ............................. CACCGCGAGGGAGTAGCCGTGACCCGCACCCTA 367 29 93.1 0 ...........................NN | ========== ====== ====== ====== ============================= ================================= ================== 7 29 97.6 32 GTGCTCCCCGCGTGAGCGGGGATGAGCCC # Left flank : | # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCTCCCCGCGTGAGCGGGGATGAGCCCGTGGTTGGGAGGGAACGAGCGGCGCTGACATAGTGCTCCCCGCGTGAGCGGGGATGAGCCCCACATCGCCCTTGCGGGACGACCACTCGCGAGGTGCTCCCCGCGTGAGCGGGGATGAGCCCGCTTGTAGTGCGGTCTTCCACTGGTGCGATTAGTGCTCCCCGCGTGAGCGGGGATGAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTGCTCCCCGCGTGAGCGGGGATGAGCCCATGAGCGAGGACATGGAGGCGGGCAGCTGGTCGTGCTCCCCGCGTGAGCGGGGATGAGCCCACG # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGTGAGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGTGAGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 492-703 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV821974.1 Corynebacterium sp. HMSC056F09 Scaffold683, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 492 29 93.1 32 NN........................... GTGGTTGGGAGGGAACGAGCGGCGCTGACATA 553 29 100.0 32 ............................. CACATCGCCCTTGCGGGACGACCACTCGCGAG 614 29 100.0 32 ............................. GCTTGTAGTGCGGTCTTCCACTGGTGCGATTA 675 29 93.1 0 ...........................NN | ========== ====== ====== ====== ============================= ================================ ================== 4 29 96.6 32 GTGCTCCCCGCGTGAGCGGGGATGAGCCC # Left flank : TGCTCCCCGCGTGAGCGGGGATGAGCCCCAGCAGCTGCTTGACGAAATCATGCGTCGCTCGTGCTCCCCGCGTGAGCGGGGATGAGCCCGGTGACGGGCACACGCCACGCACCACGCCTAAGTGCTCCCCGCGTGAGCGGGGATGAGCCCACGACGGTCTGGTGGTGCCCTGGGGTGAGGCTGTGCTCCCCGCGTGAGCGGGGATGAGCCGGCTGGTAAGCCGGGTAGGGATGGTAAGCCGGGGTGCTCCCCGCGTGAGCGGGGATGAGCCTACGCCCGCCACCTCGCCATCCTCACAGAGAAAGTGCTCCCCGCGTGAGCGGGGATGAGCCCCACCGCGAGGGAGTAGCCGTGACCCGCACCCTAGTGCTCCCCGCGTGAGCGGGGATGAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTGCTCCCCGCGTGAGCGGGGATGAGCCCATGAGCGAGGACATGGAGGCGGGCAGCTGGTCGTGCTCCCCGCGTGAGCGGGGATGAGCCCACGACGGTCTGGTGGTGCCCTGGGGTGAGGCTGTGCTCCCCGCGTGAGCGGGGATGAGCCCGACAACTCGTTAGCATTACCCGAGTAGCCCTTGTGCTCCCCGCGTGAGCGGGGATGAGCCCAGAACCAGTGGGTGAAGTCGCGTGTCCTGTACGTGCTCCCCGCGTGAGCGGGGATGAGCCCTTCGACAACGTGACCTTCACCATTAGGCGATAGTGCTCCCCGCGTGAGCGGGGATGAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 5.69 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGTGAGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGTGAGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [2-2] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 802-1074 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV821974.1 Corynebacterium sp. HMSC056F09 Scaffold683, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 802 29 100.0 32 ............................. ATGAGCGAGGACATGGAGGCGGGCAGCTGGTC 863 29 100.0 32 ............................. ACGACGGTCTGGTGGTGCCCTGGGGTGAGGCT 924 29 100.0 32 ............................. GACAACTCGTTAGCATTACCCGAGTAGCCCTT 985 29 100.0 32 ............................. AGAACCAGTGGGTGAAGTCGCGTGTCCTGTAC 1046 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 5 29 100.0 32 GTGCTCCCCGCGTGAGCGGGGATGAGCCC # Left flank : AAAGTGCTCCCCGCGTGAGCGGGGATGAGCCCCACCGCGAGGGAGTAGCCGTGACCCGCACCCTAGTGCTCCCCGCGTGAGCGGGGATGAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCTCCCCGCGTGAGCGGGGATGAGCCCGTGGTTGGGAGGGAACGAGCGGCGCTGACATAGTGCTCCCCGCGTGAGCGGGGATGAGCCCCACATCGCCCTTGCGGGACGACCACTCGCGAGGTGCTCCCCGCGTGAGCGGGGATGAGCCCGCTTGTAGTGCGGTCTTCCACTGGTGCGATTAGTGCTCCCCGCGTGAGCGGGGATGAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : CTTCGACAACGTGACCTTCACCATTAGGCGATAGTGCTCCCCGCGTGAGCGGGGATGAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTGCTCCCCGCGTGAGCGGGGATGAGCCGTAGCGGCTTTTCCATACCTCCAGTTTGTCGCGGTGCTCCCCGCGTGAGCGGGGATGAGCCCGCAAACCCGAAGCGGAAGAATGGGCCAACCGCGTGCTCCCCGCGTGAGCGGGGATGAGCCCAGCCACACGACCTCCAACTCCAACAGGACGTGGTGCTCCCCGCGTGAGCGGGGATGAGCCCGCCGCCGACGAAGCCTCCAGACCACGGATCGCGTGCTCCCCGCGTGAGCGGGGATGAGCCGGCTGATGTGCCTGCCGCCGTAGTAGCGGCCTTGTGCTCCCCGCGTGAGCGGGGATGAGNNNNNNNNN # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGTGAGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGTGAGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [0.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.64 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 1234-1506 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV821974.1 Corynebacterium sp. HMSC056F09 Scaffold683, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1234 29 96.6 32 ............................G TAGCGGCTTTTCCATACCTCCAGTTTGTCGCG 1295 29 100.0 32 ............................. GCAAACCCGAAGCGGAAGAATGGGCCAACCGC 1356 29 100.0 32 ............................. AGCCACACGACCTCCAACTCCAACAGGACGTG 1417 29 100.0 32 ............................. GCCGCCGACGAAGCCTCCAGACCACGGATCGC 1478 29 96.6 0 ............................G | ========== ====== ====== ====== ============================= ================================ ================== 5 29 98.6 32 GTGCTCCCCGCGTGAGCGGGGATGAGCCC # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTGCTCCCCGCGTGAGCGGGGATGAGCCCATGAGCGAGGACATGGAGGCGGGCAGCTGGTCGTGCTCCCCGCGTGAGCGGGGATGAGCCCACGACGGTCTGGTGGTGCCCTGGGGTGAGGCTGTGCTCCCCGCGTGAGCGGGGATGAGCCCGACAACTCGTTAGCATTACCCGAGTAGCCCTTGTGCTCCCCGCGTGAGCGGGGATGAGCCCAGAACCAGTGGGTGAAGTCGCGTGTCCTGTACGTGCTCCCCGCGTGAGCGGGGATGAGCCCTTCGACAACGTGACCTTCACCATTAGGCGATAGTGCTCCCCGCGTGAGCGGGGATGAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : GGCTGATGTGCCTGCCGCCGTAGTAGCGGCCTTGTGCTCCCCGCGTGAGCGGGGATGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCTCCCCGCGTGAGCGGGGATGAGCCGTTCACCTGGGTCAGATAATCGTATGGGATGGAGTGCTCCCCGCGTGAGCGGGGATGAGCCCTCGCGGCTGTCCGGCTCGCCCGAGGTGATGCGGTGCTCCCCGCGTGAGCGGGGATGAGCCGTCGTGCATCGAGCCGGGCTCACTACGAGACGCGTGCTCCCCGCGTGAGCGGGGATGAGCCGCATCCGCTGATAGGAAGGCGGCGGAGCCCGCCGTGCTCCCCGCGTGAGCGGGGATGAGCCGTTTCTTAGACCGAGGGGGGGGCTGTTTCGTGCTCCCCGCGTGAGCGGGGATGAGCCGGGACCTGGATCC # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGTGAGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGTGAGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [0.0-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.64 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 5 1664-2176 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV821974.1 Corynebacterium sp. HMSC056F09 Scaffold683, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1664 29 96.6 32 N............................ TTCACCTGGGTCAGATAATCGTATGGGATGGA 1725 29 96.6 32 ............................C TCGCGGCTGTCCGGCTCGCCCGAGGTGATGCG 1786 29 100.0 32 ............................. TCGTGCATCGAGCCGGGCTCACTACGAGACGC 1847 29 100.0 32 ............................. CATCCGCTGATAGGAAGGCGGCGGAGCCCGCC 1908 29 100.0 28 ............................. TTTCTTAGACCGAGGGGGGGGCTGTTTC 1965 29 100.0 32 ............................. GGACCTGGATCCGCTGAATAACCGCATCCACG 2026 29 96.6 32 ............................C GGGCCCATGCATCCGTTCGGAGTGTTGTACTC 2087 29 100.0 32 ............................. GCCCTGCGGGCGCTAGGGGCGAGACCGGCCCT 2148 29 96.6 0 ............................N | ========== ====== ====== ====== ============================= ================================ ================== 9 29 98.5 32 GTGCTCCCCGCGTGAGCGGGGATGAGCCG # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTGCTCCCCGCGTGAGCGGGGATGAGCCGTAGCGGCTTTTCCATACCTCCAGTTTGTCGCGGTGCTCCCCGCGTGAGCGGGGATGAGCCCGCAAACCCGAAGCGGAAGAATGGGCCAACCGCGTGCTCCCCGCGTGAGCGGGGATGAGCCCAGCCACACGACCTCCAACTCCAACAGGACGTGGTGCTCCCCGCGTGAGCGGGGATGAGCCCGCCGCCGACGAAGCCTCCAGACCACGGATCGCGTGCTCCCCGCGTGAGCGGGGATGAGCCGGCTGATGTGCCTGCCGCCGTAGTAGCGGCCTTGTGCTCCCCGCGTGAGCGGGGATGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCTCCCCGCGTGAGCGGGGATGAGCCCACGTCAGGCGGCCGAGCACGATTTACACAGATGTGCTCCCCGCGTGAGCGGGGATGAGCCGCCGAACGGCCGCGGCCCGCCTCGGTACCGGCCGTGCTCCCCGCGTGAGCGGGGATGAGCCCTCGGCGGTGTCCAGCTCAGCGGTCGCCTTGGCGTGCTCCCCGCGTGAGCGGGGATGAGCCCAGTGGTGGCTCGCGCCATCACGCAATCCAATGGTGCTCCCCGCGTGAGCGGGGATGAGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGTGAGCGGGGATGAGCCG # Alternate repeat : GTGCTCCCCGCGTGAGCGGGGATGAGCCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGTGAGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [2-2] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 6 2335-2544 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV821974.1 Corynebacterium sp. HMSC056F09 Scaffold683, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2335 29 96.6 32 ............................G CCGAACGGCCGCGGCCCGCCTCGGTACCGGCC 2396 29 100.0 32 ............................. TCGGCGGTGTCCAGCTCAGCGGTCGCCTTGGC 2457 29 100.0 32 ............................. AGTGGTGGCTCGCGCCATCACGCAATCCAATG 2518 27 93.1 0 ...........................-- | ========== ====== ====== ====== ============================= ================================ ================== 4 29 97.4 32 GTGCTCCCCGCGTGAGCGGGGATGAGCCC # Left flank : ACTACGAGACGCGTGCTCCCCGCGTGAGCGGGGATGAGCCGCATCCGCTGATAGGAAGGCGGCGGAGCCCGCCGTGCTCCCCGCGTGAGCGGGGATGAGCCGTTTCTTAGACCGAGGGGGGGGCTGTTTCGTGCTCCCCGCGTGAGCGGGGATGAGCCGGGACCTGGATCCGCTGAATAACCGCATCCACGGTGCTCCCCGCGTGAGCGGGGATGAGCCCGGGCCCATGCATCCGTTCGGAGTGTTGTACTCGTGCTCCCCGCGTGAGCGGGGATGAGCCGGCCCTGCGGGCGCTAGGGGCGAGACCGGCCCTGTGCTCCCCGCGTGAGCGGGGATGAGCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCTCCCCGCGTGAGCGGGGATGAGCCCACGTCAGGCGGCCGAGCACGATTTACACAGAT # Right flank : | # Questionable array : NO Score: 5.73 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGTGAGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGTGAGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [33.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //