Array 1 3459-3186 **** Predicted by CRISPRDetect 2.4 *** >NZ_NKLF01000265.1 Lactobacillus crispatus strain RL16 RL16_317, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ========================================= ================== 3458 25 100.0 41 ......................... TGGTAGGAACCGAGAAACTCATGTTGTAACAGATGCAACAA 3392 25 100.0 41 ......................... TGGTAGGAACCATACATTAATGCAATAATTGCTTTGTAAAC 3326 25 92.0 41 ..................TT..... TGGTAGGAACCAAAGATACTGAGGAAGTATTCCAGCCTAAT 3260 25 88.0 25 ...........T......TT..... TATCTCTTCATCAACCTTGCGTATT 3210 25 100.0 0 ......................... | ========== ====== ====== ====== ========================= ========================================= ================== 5 25 96.0 37 ATCTTAGATGTATGTCATAGCTTTA # Left flank : GCAATCCTTCTTTAGCCAAAGAAAAACTGTATATGCTTAAAAATTCTGCAGTATTATCAAATATTTATCTTTTGAATTCATACAGTGATTTGTCCAATAAGCTTATAGCTTATAGAGTAGCTAGCAGGGTTGACAGCTTGCTAAATCATATTACTTGGCGGGATTCCTTATGTTCTAAGGAACAATATAACTCCTTATTGAAAGATTACTTATTCAATTTATCTAAAAGATTAAAAAAACATAAGGAACTAGCTCAACTAGAAATTAAGCTTAACTATTATGATTTGTCTAATTTAGCATATGTTTGCTATGAAATGATTTCCGGAATGATTTTCCCCTGTCCCCCAGTCAATGAAATATCCATTTAAAGCAAAGAAATAATAAAATGTATTTTTTGAAAATCGATCCTACGAACAGTTATGTTATAATCTAATTATCATTTAAGGTCTGATAGCAATTGGTTTCTGGATATATTCTAAGATAAGTATTAAAGAATACCT # Right flank : GAGTAATAATTCAAGTAGTTGCCGCTAAAACTATGAATAACTTAAACGTTTTAAATCAAAAAAAGGTGCCAAATTCTTGATAATACAAGAATCCTAGCACCTTTGCACTAAGTTCATTAGCTATTGAAGTAATTACTTCAATATTAAATGTAATTATATCATATATCTGAAAGAAAACTCCTTTCCAGATGATTAAAAACGATCAAGATTCTTAAAAAGAAAATCTTGATCGTTTTTTGCGCTCTTTAAATTTCTTATTTTTCCAAAGCAACTTTAATTGAATTACTGTTTGCTTTTACTTTTTTGACGATTCTGATAATTAGTTATGAAGTTCTTTAAGCCTTCTATGTCACTAACTGTTAATCGACCAACATAATTAAACTCTGCTAAGCTTATTTTCACTTGATATGGTCTATCAATTACAACATAAGATTTCCTATTCAAACCTACTTTTTGCCAATCAACTATTGGATAGCGAATAGCTTTCATAGCACGTGACT # Questionable array : NO Score: 2.76 # Score Detail : 1:0, 2:0, 3:0, 4:0.80, 5:0, 6:0.25, 7:-0.09, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCTTAGATGTATGTCATAGCTTTA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 2827-2552 **** Predicted by CRISPRDetect 2.4 *** >NZ_NKLF01000097.1 Lactobacillus crispatus strain RL16 RL16_97, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2826 29 96.6 32 ............A................ ATCATCTTGAAGGGCACGGGAGACAAGGCAGA 2765 29 89.7 33 ...........ACA............... ACTGTTAACGGTGATGACTGGTATCCAGTTAGC 2703 29 100.0 32 ............................. ACTTTGAGCTGTGTCAACGCCACAGCCGTTTA 2642 29 86.2 32 ...........ACA..............A AGTCGTTACATCAGCCAAAAGATGAGGCTTAA 2581 29 72.4 0 ...........ACA.........A.ATAG | C [2555] ========== ====== ====== ====== ============================= ================================= ================== 5 29 89.0 32 GTATTCTCCACGTGTGTGGAGGTGATCCT # Left flank : GTTTATACCCAACACCAGAAGATGCAAGTAATGATTGTTACTCAGCACCCACAGCATATTATCGATGGTATTCAAAACCGGATGCATAGAGGAATTACCATTTTGCATGATGCTGAAGGTGCATACAGTCATATTGAAAAGACAGTTTTGATTACCATTATTGATCGATATGATATGTATGATATTCGCCAAATCGTGCAAGGAGCAGATCCGTATGCTTTCATGAGTGTTAGTGAAGTTGAAAAAGTATATGGTCGCTTCAAGGAGCAAGAAATCGTTTAATGGATAGCCCTTAAACCTTGATATATAAGGATTTATAAATGAAATTTGAATCCTAGGGGCACTTTGGGAGCAAAACTATTCAAAAAGAAGCAGAAATGCTTCTTTTTTATTTGGAGTGGCTTTTTGTAATTATGGCTTTATTATTGGTCTTTGTTAAAAGTGATTAAAAATGATATTATTTCGATTGAGGGATGTTGATATATCGTGGATCATTTAGT # Right flank : CTGCTCTGAAAAATATGTTCTATAGAGTGACTGTTTTTGTATATTATTTAAAAATATTGTTGATGGTGCACGGAGATTGCGTTCACTTATATAGTGAAAAGATGCTAAGAAATCTAAAATAGAATCGAGATGAATTGGTAATCTGGTAATCGTAAGAAGGACTTAGCTACTAATCGTTGTATTCAATTTTGATAACAAATTAATTAAAGAGCAAAAAATATGAAGAATTATAAATTTAATAAGTTTATGTAAAAACAGTGTCATTAAGTTAGGCTATTGATTTTGGTGAAAAAACAATTAAAGCATCATTTGGCTTTAGACGGCCAGATTGATGCCCTTTTTGGCATATTTTTCTAAATATCATTCGCGTTACACGTAAAAGCGTGTGTTGTATATAGTGAAAGGAGGCTAAGAGAATCGGAGCTAAGAGGTGACAAATATGCCGAAAGCCTATAAAATTAACTCATACTGGCAAAAATACTAAATGGTCATTAAAGTTC # Questionable array : NO Score: 3.70 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:-1.5, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGTGTGTGGAGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.70,-9.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [4-4] Score: 0/0.41 # AT richness analysis in flanks prediction: R [58.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 50786-50300 **** Predicted by CRISPRDetect 2.4 *** >NZ_NKLF01000096.1 Lactobacillus crispatus strain RL16 RL16_96, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 50785 36 100.0 30 .................................... AGTAGTCTCCAATTCAAAAGGTGCTTACGT 50719 36 100.0 30 .................................... AAGCACTTGAATCTTGTCCCTGCTAGGAAC 50653 36 100.0 30 .................................... TCGAATTTAGAAAAATCAACATTAACGCGG 50587 36 100.0 30 .................................... CCGTGAAAACGGCGTTTACATGCGTAAGAC 50521 36 97.2 17 ..........G......................... TATTAGCTTTTGCGGCG Deletion [50469] 50468 35 80.6 30 ..ACC.A.C.G..-...................... TAAAGAAATAAATAATAGAGGTGTGAGGTA TGC [50460] 50400 36 100.0 30 .................................... CCACTATCGCGCCTGGAATACCTGTTTTCT 50334 35 83.3 0 ......................-..G.AG.C...A. | ========== ====== ====== ====== ==================================== ============================== ================== 8 36 95.1 28 GTTTTAGATGATTGTTAGATCAATGAGGTTTAGATC # Left flank : GGAGATGGTAAAATAGACATTGGCACAAGCCTTTCATGCAAATAAATTATGTTTTGGTCAATATAATTATAGCAATGAAAAGGACTTGTGCCTTTTATATTTGTCAAAACACGCAGAATCACAATGAAACAAGCAATTTTGCGTGTGGGAAGTTTAAGTAAATAATTAAAAAATCAATTTACGAGAAAGATCTATTTACACAAAAGATTTGACAGTTTCATGTTAACACCATATGCTATAATTGAAACAGTTCTTAAGATTCATCAAGAATATAATCTTGATAGTATTCCCGTGTTTTGTAATGTAGCTCATTACCTTGATGAAACACAGTTAAAAGAACTTAGTAAGATTGTTAGACAACTTAAATTGAAAATTATTTTAATTGAATTCACAGATAAGAAATATGGGGTAGCAGTCAAGGATGCTCAAGTTGCATATATTGATCGAGATCTTGTTGATTGGTATTAGACAATTGATTAAAAAGATATTATGAAATATCG # Right flank : AGTAATATGCATAAATTTACAAATATTTTTCTGTAAATAAAAATCGCTCTAGAGAAACTCTAGAACGATTTTTGGACATACTTGATCTTAGTATCTATTATTACTTAGCGTAATCATCAATACCCAAGTGCTCCAAAATAAGTGCGGCAGTTTCTTCAATGGAGCGGTGAGCAACATTAATTACATAGCAACCTAATTTCTTATAAAGTGCTTGTGCTGATTCAAGCTCCTTGTTGATTGAATCCATATTAGAATAAGTAGTATCAGGATTCAAACCATAAGCGATCATTCTTTGACGTCTGATTTCGTTCAATACAGATGGATCGTTAGTCAAGCCAATAATCTTCTTAGGATCAATTTCGTAGATTTCTTTTGGAATGTGAGTTTCAGGAACAAGTGGTAAATTAGCTACCTTTAAGTTCTTATTGGCTAAGAACAAAGAAAGTGGAGTCTTAGAAGTTCTTGATACCCCAAGTAAAACAACGTCAGCTTCCAAGAAA # Questionable array : NO Score: 5.83 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:-0.17, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGATGATTGTTAGATCAATGAGGTTTAGATC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTAGATGATTGTTAGATCAATGAGGTTTAGATC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.70,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [16-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //