Array 1 8200-7093 **** Predicted by CRISPRDetect 2.4 *** >NZ_MPVB01000081.1 Pseudomonas aeruginosa strain 584004 contig_81, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 8199 28 100.0 32 ............................ TGGTCGTTGATGGCGTAGCCTGCTCCGAATTG 8139 28 100.0 31 ............................ CGCACGTGCGGAGGCGGGATATGGGCGGCCG 8080 28 100.0 32 ............................ GTATTCGATGAGGACAGCGGGCTGCTCGGGAT 8020 28 100.0 32 ............................ AAGGGCAACGCTGGCCGTCACGGCCGCCGAAA 7960 28 100.0 32 ............................ TCGACGTTGCCGACCCGCGGCCGCGCCCGGTT 7900 28 100.0 32 ............................ TCGGCCAAGGCTCCGGCATCGAGCACGATGCC 7840 28 100.0 32 ............................ TTGAGGAACAGGCGCGCTACGTCCGCCGCGAA 7780 28 100.0 32 ............................ TTGATGATGCCGTCCTGCTGTTTGCCGGCGAT 7720 28 100.0 32 ............................ ATTCCGGCAGAGGTTCGCGAAGCGGACATTGA 7660 28 100.0 32 ............................ TGTACCAACTGAGGTGCTACCTCAACCATGGC 7600 28 100.0 32 ............................ AGGCCGATGGAGTAGCCGGACAGCACTGAGCC 7540 28 100.0 32 ............................ TGTGCCGGGCAGGCTGGCCAGCGCCTCATTGA 7480 28 100.0 32 ............................ GTCGGCCTGGAGTTTCGTCGGGCGTACATCAG 7420 28 96.4 32 .................T.......... CAAGCGGACGGTGACACGGACTATCAGACCGG 7360 28 100.0 32 ............................ ATCTCAGCGCCGCCTGTTCTGCCGGCCGCATC 7300 28 100.0 32 ............................ TACGGGCAGTCACGGCGAAAGGCACTCAGCGA 7240 28 100.0 32 ............................ TCGCGCAATGATTTCAGCCGCGGAGCGCATAG 7180 28 100.0 32 ............................ ATAGATAACACGTGTGACCGCGACCACTACCG 7120 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 19 28 99.8 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CACAAGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCT # Right flank : CTCAAGAAAGAGCAGAACGGCCAGCTTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCCTACGGATCGGGTTCCTGGCATCCACGAAGTGAGGCTTGCCCTCCAAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGCCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGGCCAAGGCAGGCACAGAAAATAGCTTGACCACCAAACATGACGCCCGCTCAAGCGCTAAGCAACAGCGCCCCCCTCACTGCCGTGTAGCTAAGAAATCGCGAGCGATATAGTCCCGTAGGGCGAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 38447-39314 **** Predicted by CRISPRDetect 2.4 *** >NZ_MPVB01000080.1 Pseudomonas aeruginosa strain 584004 contig_80, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 38447 28 100.0 32 ............................ TTACAGCCGCCGGTAAGACCCGAGCCGCCAGT 38507 28 100.0 32 ............................ GGTGACGCTGCACATCGTCGCCGCCGACTTCA 38567 28 100.0 32 ............................ AATCAGATCCCTCGCCGAGCGGCGCATCATTG 38627 28 100.0 32 ............................ AAACTCATCAGGCACCGGCAGCGCAATCAACT 38687 28 100.0 32 ............................ TGGCCGCTCGACCACGCCGGCATACTCACCGC 38747 28 100.0 32 ............................ TCAACAAACGCCACGGCGAACATGAACACGCT 38807 28 100.0 32 ............................ AGCCACTGGCATTCGAATGGGCCGGCCGGGAA 38867 28 100.0 32 ............................ TGGCGAAGGGCAGGGATGACAAGGGACAGCGT 38927 28 100.0 32 ............................ TTGTAGGGCGGCTGGGTATCGCTAACCATCAG 38987 28 100.0 32 ............................ ACCGCAATCCGTCAGTTCCAGTTCCGGGACAT 39047 28 100.0 32 ............................ ACCTCAAGCGGAAAGCAGATCGGCCGGACGTT 39107 28 100.0 32 ............................ TAACCGCGCCCTGGCGCATACACACACTGGAG 39167 28 100.0 32 ............................ AGGAACGCGACCAGGGCGCAGACGGCAACAAC 39227 28 92.9 32 .....................A..A... TGTCTCGAAGTTCATAAGCGGGCTTCGGGCGA 39287 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 15 28 97.9 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : GAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGCTGCAAAAAGAGGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTGGGAAGGTTGATGGTTTTTTGGTCTT # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATAAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGAAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCACCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGCTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGACGTTCCGGATTGCTTTTCACCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 48996-48188 **** Predicted by CRISPRDetect 2.4 *** >NZ_MPVB01000080.1 Pseudomonas aeruginosa strain 584004 contig_80, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 48995 28 100.0 32 ............................ AGCCCGAGCTGAGCGATATCCCCTGTCACGAC 48935 28 100.0 32 ............................ GCCTACAACCTGCCGCAGATACAAGCGCAGAT 48875 28 100.0 32 ............................ TGGACACCATCGATCCAGGCCAGCCACGTGCC 48815 28 100.0 32 ............................ TATTACGACATCCAGTGGCGAGACATGGCCAT 48755 28 100.0 32 ............................ GCGGAATCATCTCGCCGGCCGTCTTCGTGCTC 48695 28 100.0 32 ............................ CCGGACGCCCCTAATCTGGAGGGCTCCTGGCA 48635 28 96.4 32 ..A......................... TTTCCCCGCGAGGCATAGCAGGGATATCTTGT 48575 28 100.0 32 ............................ TACAAGCAGATCGGCGAGCTGAGCGGCAAGGA 48515 28 100.0 32 ............................ GTGTGTGCGGCCAGCTCGGACCCGAACTTGAT 48455 28 100.0 32 ............................ ACTGAAAGACTCAGAAATCGTGCACGCCTTCC 48395 28 100.0 32 ............................ GGCAATCGCCGCGTCGATATCTTCCGGGGTCA 48335 28 100.0 32 ............................ CATGGTCGTCACCAGTACTTCTTGGGGCGGGC 48275 28 100.0 32 ............................ TCGTACTGGTCGAGATTTCCGATTCGGAAGCC 48215 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 14 28 99.7 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : CACAAGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAACTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGGCCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCT # Right flank : CTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCACTACCAAACATCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGAGAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACATTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAACATGGACGACATTTCTCCCAGCGAACTGAAGTCGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCAGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACTTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATTG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [31.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //