Array 1 33737-32093 **** Predicted by CRISPRDetect 2.4 *** >NZ_LITT01000046.1 Clostridium ljungdahlii strain ERI-2 scaffold4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 33736 30 100.0 40 .............................. CTTAAACAAGTATTTGTGGAAGTATGGAATGGTATGAAAA 33666 30 100.0 35 .............................. TAATCTGTCTGGCTTACTTTCTGATTTATAGCATT 33601 30 100.0 37 .............................. GAGCCATCGTCTATAACGTCATGTTCAGCAATTTCAA 33534 30 100.0 36 .............................. CTTTTTCTTGTACACTTTTTATTTTTGCCCTGCATC 33468 30 100.0 37 .............................. GCTTTTAGTACCGCTTCAATTATAATTGCTATGGGAA 33401 30 100.0 37 .............................. TAAATTCAGCAACATATTCATCTTGGTGCCCATTAAC 33334 30 100.0 37 .............................. ATGTCTAATTCTTTTGCAAGTTCCATTCTATCTACAT 33267 30 100.0 38 .............................. TCACAGGATGAACTTGAGTTGCTCAGGGATGCCTGCAA 33199 30 100.0 38 .............................. CAACAAAGATACTGAGGATAAAAATCTTGCAGAGATTA 33131 30 100.0 37 .............................. AAAGAAAAACCTTGCCAAGATTGGGCAAGAAAACATA 33064 30 100.0 37 .............................. CCTTCTGCTATAGCTTCTTTCATACCTGTGTTTGTGG 32997 30 100.0 38 .............................. ATTTTTAAAAGGTCTATGTGTGCTGTACTAGCTATTAC 32929 30 100.0 39 .............................. TTGGATAGCAGAATAAAAAATATGCAAAGAAAAATAGAG 32860 30 100.0 37 .............................. TTATGTACCTAGAACATCTAAGCCTAAAAAGAACAAC 32793 30 100.0 36 .............................. AATTCACCATAAACTGTATTTTTAAAAGCAGGCATA 32727 30 100.0 37 .............................. CAGTAACCTTTCTCTTTTTCTTCCATGGTGTATTTGG 32660 30 100.0 39 .............................. TGGTGAACAAAATAGATAATTAGGAGGGATACAATGGGA 32591 30 100.0 36 .............................. TATTTAAAGCTGCATTTTCAAGGCAAAACTTGTCTA 32525 30 100.0 37 .............................. TAGTCAGGAGCTACTTTTAAAAGAGTATGGTTATGAT 32458 30 100.0 37 .............................. TTTGGACTATTTGATTTAATATTTCATTTGACATTTA 32391 30 100.0 36 .............................. ATTCTTCCTGCATTGTTGGAATAACTTGCATATTTT 32325 30 100.0 37 .............................. AATCTTGACCACACTTCATACTTTTTAAAAGGAAGAA 32258 30 100.0 38 .............................. TTAGGTTTTGTAGAAATAACACTGCCTGTAAATATATC 32190 30 96.7 37 ................A............. ATCTCATAAATATTTACTCTACCGCGGTTCTTAATAA 32123 30 90.0 0 .....................G...A...G | G [32095] ========== ====== ====== ====== ============================== ======================================== ================== 25 30 99.5 37 GTTTTTAGAATACCTATGAGGAATTGAAAC # Left flank : AAACTTCAAAAATATATAACTGAAGATGAGCCATACGATGGTTTTGTTGCGAGGTGGTAGGCGTTGTTTGTAATACTTGTTTATGATTTTGGGGAGAAACGTGTTGGGCGTGCTCTTAAAAAATGTAGAAAATATTTAACCTGGGTTCAAAATTCTGTTTTTGAAGGGGACATAAGTGCAGCTAATTTAAAAAAGATAAAGTGTGAGCTTTTTGATATTATGGTAAAAGGTGAAGATTCGGTAATAATATATAGTTTTAAAAGTACCAGGTATTCTAATAGAGAGGTACTTGGGGTGTCAAAAAATCAACAGGATATATTTTTATAAAATGTATTGGTTAGTTTTATGTTGTCGACCCTGAATAGTGCAAAAAACACCGGGGGTCGACGATTTTTATGTTTGTAGGCAATTAGCGGTTTCAGATTGATTTTTATCATTTTTACAAAAGTTTTCTCAAATATTGCATTTTTATAAATGCTGATGTATTCTATATTCGATGG # Right flank : TTAGTTCTAAGTTTAAAAGTGATAAGTATAAATTAATAATTGAGGAAAGTATAGAGTTGAAATAACAAAGAATAAACAATAATTGATATTTAGACTTTGAACTTTGTTATTTATTTTTAAATAGTCAAGAATTAGATTTTTGAAGTATCATAATCTATTAGTTACAATGGATTAGGGTGCTTTTTTACTTTATCCTTATATGCAATAAAAAAGAACATAAGTTTGTATAGAATTGTAATTCATGGCAAAACTAATACTAAATTTTATCCGATGGCTACCAGCCGTAATACCCCCATCGCACACAGCGAAAGCAACTTGGAATATCTGCTTTTCTTATAAAGTGGGGGATAACGGCTGCTACGCCCCTGGATAACGATTTCTAAGTTTCAGATGGAGAAAAGAACTCCACCTGAAACCAAGAACTCTGTTTATATTTTAGTGGAAAGATATGATTGCTGTGGATTATAATAAAGTTGAAGATGCAGTACTAAAAAAAGCAC # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTAGAATACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.30,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA // Array 2 47113-43853 **** Predicted by CRISPRDetect 2.4 *** >NZ_LITT01000046.1 Clostridium ljungdahlii strain ERI-2 scaffold4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 47112 30 100.0 38 .............................. TATTTCTCTCCGGCTTCTCCGGTATCACCGCAAATGTA 47044 30 100.0 39 .............................. CAAAAAAAGTTCCATCATCAGTCCAACCACCCTGAATAG 46975 30 100.0 38 .............................. AACCACTTCTCACCTATAGAATCAACATCACCCTGTAC 46907 30 100.0 36 .............................. GAATCCATTGTCTCCCATTCTACTTTTACACATTTT 46841 30 100.0 40 .............................. TTATTTTCAAGTTGATTTAAATAACTATAAGAATAACCAG 46771 30 100.0 38 .............................. GAAAAAAGACAGGCACAAAGCAGACAACAGAAAGCAGA 46703 30 100.0 39 .............................. TCTGTGTACTGGTCTGCTTTCCAGTATGCAGTTATTCTC 46634 30 100.0 37 .............................. TTGTACCTATAATGGAATAGCTTATTTTCTTAGGCGC 46567 30 100.0 37 .............................. TTGGTGATGTATTTGAACCTGTAACAAGTAATAATAT 46500 30 100.0 38 .............................. TTTAAACCTCTATATTTCTTAGATAGTTGCTGCCTAAC 46432 30 100.0 37 .............................. TTGGCTAGTAGAGATAATGTCACATTTTCCCTTGTAA 46365 30 100.0 37 .............................. CCAAAATAAAGAGGATTCATAGCATTTCTAAGCCAAT 46298 30 100.0 38 .............................. TATATCTTCAGATAAAACAAAATAAGGACTATGATTGG 46230 30 100.0 36 .............................. TGTTGATACTAACGTTGCTACACAGTACCAATTGAT 46164 30 100.0 37 .............................. TTTGCAATTAAATTTCCTCCTTAAAATCATAATTCAT 46097 30 100.0 37 .............................. TATATAGGCTTCCCTCTAAGTTCTTACAAAATTTATG 46030 30 100.0 38 .............................. TAGTCCAAAACTTCTCTTACTTTGCTTGCCAGTACAGG 45962 30 100.0 37 .............................. TCAAATACTATCTTTTCTAATATTGGACTTGGGTGTT 45895 30 100.0 38 .............................. TTGTAGTTCTCTGCTCCAATATATAATTTCCAATCTCT 45827 30 100.0 39 .............................. TAGTGTAAATTGTTCGATATATAGAGTAAGATTTTGTAG 45758 30 100.0 39 .............................. TTCCCTGTTTTATAGGGGCTTCAGCTTTTTCAACCATTC 45689 30 100.0 39 .............................. TTGAGTAAGAATGTAGATAACATAGTAGGATATATGCGT 45620 30 100.0 37 .............................. TAAGTACCATTCTTGCAAGCATACGCCATTGTTCTGT 45553 30 100.0 36 .............................. ATGGGAATTGATGCAAACTATAAAGTAGTTCAAATA 45487 30 100.0 37 .............................. CTTTTGATATTATTTTTACACATCTAGGTCTTATGTT 45420 30 100.0 38 .............................. TTTACTGATAGAGAGCTTCAAGTTGGTAATGAGATAGT 45352 30 100.0 36 .............................. CTTCATGGCACTCATGAAGCCGTTAAGAAAACTCTA 45286 30 100.0 35 .............................. ATTCTATAGGCTGTACATCAACTATGTTTGATTCT 45221 30 100.0 36 .............................. TTTAAAATCCCTAGTGTCTGATGCATATACTCAGTT 45155 30 100.0 38 .............................. TTAGTAAAATATAGGCCTCCTAATATTAAAGCTTCTGT 45087 30 100.0 36 .............................. TTAGAAAATAAGGAGGAAGTACTATGGATAATAAAT 45021 30 100.0 37 .............................. ATATTTTCTATGCAATAGTAAGCGATAACCTTTATAT 44954 30 100.0 37 .............................. GCTATTATATTTTTATTTATAGCTTCAGTAATTTCGA 44887 30 100.0 36 .............................. TGCAGTTGCTATAAGTTATATGAAATCTTTATAAAT 44821 30 100.0 37 .............................. TTTTGTGAAATGTTCATCAATAGGTCGCCATACTTTG 44754 30 100.0 38 .............................. TATTTAGATTGGATGGAGAATTTTACCTCTAGGGTTAT 44686 30 100.0 38 .............................. TCGGGTTCAGACTCTTCATCATCCCCCGGTCTTAGTTT 44618 30 100.0 37 .............................. TGTTTTCTCCTTAAGCCTTTACCTATTACATTTGCAA 44551 30 100.0 39 .............................. TTTTTTGGGTAAGTGACGAAGAATGGGAAGGATTAGACA 44482 30 100.0 36 .............................. CTTGCAAAAAGAAATGGATGGAAAACTTGGAGAGAG 44416 30 100.0 37 .............................. TTGTTTCTGCTCCTGGCCAAAGGAATTTTATCTAAGT 44349 30 100.0 37 .............................. TTGTTTCTGCTCCTGGCCAAAGGAATTTTATCTAAGT 44282 30 100.0 37 .............................. TTTTCCCAGTTCTCTATGTTTTCTTTAATATTGTCTA 44215 30 100.0 37 .............................. CTACATATCCTGCATCTAATAATGGTTGTAATAACGT 44148 30 100.0 36 .............................. TAGTCAACCATTTTTACGTCCTGACTACCACAATTA 44082 30 100.0 37 .............................. ACGAAACCTGCGAAAACACAATAGTTAAGGAGTGATT 44015 30 100.0 35 .............................. TCTATATAGATGTGTATAATCTCACTTGGTGCAAA 43950 30 96.7 37 .................A............ AAATAAACTCTGTACCATGTCCCCTCTGTATCACCAA 43883 30 90.0 0 .................A.......A...G | G [43855] ========== ====== ====== ====== ============================== ======================================== ================== 49 30 99.7 37 GTTTTTAGAGTACCTATGAGGAATTGAAAC # Left flank : ACCACCATAAAAACTTTTGACAAGTCTAAAGCTCGGTATTTAGAAAATCTAAGAACCTTAGCTAAACTCGTACCTCAAACATATCTAAGCTCCTAGGATTTTCTAAAATGCCTCGCTAAGACTTATGGAAAAGTTTTTAAAGGTGCTTTCAATTTTGTCATTACATTTTATGCATAAGTTTAAATTTCAATTGGAAACTCTATATATATTTTAAGTGGATGTAAGATATATGAATAATAAAAAAATGATGTTAAATTGAGATAAAAGTTGTTATAATTAATCTAAATATATAAGTTTTGTAGTAAAATTAAAGAAGGTAGCAATTGAGATTTAATTATTGAAACTGATAAAATTTTATGTCGTCGACCCCCAGTAGTGCAAAAAACCCGGGAGGTCGACGCAAATTATTTTTGAGTAAAATCAATGCTTGACAGGAATTGCCCTAATAAGTGGAATATATTGACTTTTTGAAGAATGCAGGTGTATTCTATACTCGATGG # Right flank : TTAGTTAGGATAAGTATAAAATTAATAGTTGAGGAAAGTATAGAGTTGAAATAACAAAGAATAAACAATAATTGATATTTAGACTTTGAACTTTGTTATTTATTTTTAAATAGTCAAGAATTAGATTTTTAAAGTATCATAATCTATTAATTGCAATGGATTGAGGTACTTTTTATTTTATTTCTGTATGCAATGAAAAAGAACATAAGTTTGTATAGAATTGTAATTCATGGCAAAACTAATACTAAATTTTATCCGATGGCTACCAGCCGTAATACCCCCATCGCACACAGCGAAAGCAACTGTCGCCAAATCAAAGATTTGGAATATCTGCATTTCTTATAAAGTGGGGGATAACGGCTGCTACGCCCCTGGATAACGATTTCTAAGTTTCAGATGGAGAAAAGAACTCCACCTGAAACCAAGAACTCTGTTTATATTTTAGTGGAAAGAGATGATTGCCGTGGATTATAATAAAGTTGAGGACGCAGTACTTAAAA # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTAGAGTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,9.41 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 146225-145796 **** Predicted by CRISPRDetect 2.4 *** >NZ_LITT01000035.1 Clostridium ljungdahlii strain ERI-2 scaffold3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 146224 30 100.0 37 .............................. ACAGTATAGCCTTGAAAATAAAGCTTTATAATTTTCT 146157 30 100.0 36 .............................. AAGTTAAATCAATAGCAGATTTAGAATGGAACAAAA 146091 30 100.0 37 .............................. TTTTCTTCTATACTTACGTCTTGCACGCCCGTAAGTG 146024 30 100.0 36 .............................. TCTTATTAGCCAATTTTCTTATCTTTGGTATGCTAT 145958 30 100.0 36 .............................. TTGTTACTCATTCTAAGAGTTATGTCTAAAAGATCA 145892 30 100.0 36 .............................. CTGTAGAGATTATATAGAACTTCCTGTGAAATCTCT 145826 30 83.3 0 .................TC.A.T...G... | C [145801] ========== ====== ====== ====== ============================== ===================================== ================== 7 30 97.6 36 GTTGAACCTTAACATGGGATGTATTTAAAT # Left flank : CTTAGTAATTTGCTTAGCTGAATAATACCTATATCCAGTGAATGTATCTATTTCAGCAGGTTTAAAAAGTCCCGCCTCATCATAATATCGCAGCATACGTATAGATACCATTGTTAGTTTAGAAAAATCTCCAATTTTAAACATAGAATCAACTCCCTAAAAATATCACTGCTAATTACAATTTAAGAATAATACCTCACACCATGTTAGAGTCAATATTTTATTTTTATACTTTAACATTAAATGAAGCAAAATACTATATAGGAGGCTATTTTATTAAATGAAAGACGTACTAATGTTTTTGATAGTATACAGGTCAAATATTTTCCAACCTTTCTGAAGATAGAAGGTGCTTCAATGCATTGATATGTAATAAATTGAGGCACTTTTTCGGCTGAGTTTATGAAAATTGAAAAACGGCTGGAAAATTTTCAGCGAATGCCTTTATTGTTAAGGGTTTTAGGGTTATAATGAAAATAAAGAATGGCTATTTTACTATG # Right flank : AAAAATAATAATCTGTAAATATTTAAAAATATGTTGGATAGAAAAACATAAATGCTTTATAATTAATACTAAGAAGGATAAACATAAGAGGATGTGGATGAGACTTGGCAAAGAAACACGATTTTGATGCAGCATGGAAATCAATTTTGGAAGCCTTTGAAGTAGAGATAGTAGAACTGCTTTTCCCGGAGATATTTAAAAATATAGCATGGGAATATGGAGCAGAATCTTTAGATAAAGAACTTCAAGAAATACAAAGAGAAATTTTTGATAGAGACAGCAGTGAAAAAGTAATATCAGATAAAATAATAAAGGTAAAATTAAAAAATAATAAGAGTAAAATATTGTTTATACATGTGGAAGTACAAAGTTATGCCAGCTGTGATGAAGTATTTGGGGAGAGAATGTTCAGATATTTCTATAGAATCTGGGATAAATTTAGGTATAGGTATGAGGACAAATCGGAAATAGTGGCAGCAGCGATATATACATATAAGGGA # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACCTTAACATGGGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-2.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [85.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 2 147956-147533 **** Predicted by CRISPRDetect 2.4 *** >NZ_LITT01000035.1 Clostridium ljungdahlii strain ERI-2 scaffold3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 147955 30 100.0 35 .............................. CAATGGGAGACAAATGTTATAACATGGGTTTCCAC 147890 30 100.0 35 .............................. GCTTATGTAGATGCTATTAAAACTATATGTGGAAA 147825 30 100.0 35 .............................. TATTTTCCAGTTACTCCATTATTAGGATCTCCCAT 147760 30 100.0 36 .............................. GTAAACAAAGGTATTGTATCTTTTATTAAGTCTTTT 147694 30 100.0 36 .............................. TTTTAATAAAATCTCTAAGTGTTTCTTTCAGTTCTT 147628 30 96.7 36 .........C.................... AATATAGTTAAATTAGTATCCATGGATTTTTTATGT 147562 30 83.3 0 .........C......G......G.A...C | ========== ====== ====== ====== ============================== ==================================== ================== 7 30 97.1 36 GTTGAACCTTAACATGAGATGTATTTAAAT # Left flank : TTTTATTAGCCATATCAAATTCATATCGCTCATAAGGCTTTTTTAAAGTAATGTTAAACTTAGTAGGAAAATTATTTTTTGTATATTCTGTGAAAGAGTTCCCATCTGCTGAAACATCAATTTTACTTAAATCGCTCCGCCACTCATATTTATTGTTATTTGTAACTACTTGCCATACTTTTTTAATATCTGATTTAAATGTAGTTGTAATGGTTGATTCCTTCATAATACACATTCTCCCTTATAAATTTACTATTTATCTGTATGCTGTGCAAATAAATTATACCATTTTAAACAATATATTACTATATTTTGTTGAGTATTTTCCAACCAGTTTGGGGAATAGAGATGCTTTAAGTCATTTGAATTCAATGGATGAGGGTATTTTTTTTATTGAGTTTATGAAAATTGAAAAACGGTTGGAAAATTTTCAGATGATGCCTTTATTGTTAAGGGTTTTAGGAATATAATGAAAATAAAGAATGGCTATTTTACTGTGG # Right flank : TAAGACATTTTTCTTATTTTAAAGATTCAAATGAGGTGTAGCAGGTTTAATTTCCTGCTAGAATAAAAATTATTTTGTAGTTACAGCCTTTTTATATTGCTTACAAATTATACATATATAATTTGCAAGCAATATTAATTTATAATTTTTTTACTGGAACTTGTATTTCAGTTAAGTAATCACTAGGATTTGCTTCATTACAAGGTCCTTTTAGAGGCAACTCACGGGCACTACCACATATGCCATATCCATTTTCTTCAATCCATTGTCCAAGATAATTATATGCAGGAGCAATATTTGAAAATTCACCTGGAACTAAGATGCTTACAACCTGATCTATTGGTGCAGTTTCTTTGAAAGTAAAACCATCAGCATCATTTAATAATTTTTCAACAACAACTGCAATCTCGACGTCAACTGGTCCTTCTTTATAATCTTCATCATGATAGGTGGCATAAGCAATATTATTACAAGAAATCTTTTTATCTTGGATATATTCA # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACCTTAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 3 158083-157789 **** Predicted by CRISPRDetect 2.4 *** >NZ_LITT01000035.1 Clostridium ljungdahlii strain ERI-2 scaffold3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 158082 30 100.0 36 .............................. TTTTAATATTATTCAGGTTACTATCTTTTTTATACT 158016 30 100.0 36 .............................. GGGTCTTGTGCAAATACTCCTACTTCTCTAAGATAA 157950 30 96.7 34 .........C.................... ATACCTGCTTTTATACTTTTATAATTATATAACC 157886 30 96.7 36 .....G........................ GAAATTGGTGTACCTTTTGCTTCTTGTAATATTGAA 157820 30 90.0 0 .......................AA....A | AG [157793] ========== ====== ====== ====== ============================== ==================================== ================== 5 30 96.7 36 GTTGAACCTTAACATGAGATGTATTTAAAT # Left flank : CTACCATATTTGTTTTTGATAATAATAAATTAATTGGTTTTGGTCGTGCAATTTCAGATGGAGTTTACCAGGCTGCAATTTATGATGTAGCAGTATTACCTGAATATCAAGGAAAAAATGTTGGAAGAACAATTGTTAATGGTATTTTAAATCGTATTCCACAGTGCAATTTTATATTGTATGCTTCACCTGGTAAAGAAACCTTTTATGAAAAATTAAATTTTAGAAAAATGAAAACAGGAATGGCATTGTTTTGCAATACAGAAAAAATGCAGGCAAAAGGCTTTATTGAATAACTCCTGGCAAGTAAAAGACAGAAACATTTTTCCAACCAATTTGAAAAACACAAGTGCCTTAAGCCGTTTGAATTGAATGGCTGAGGCCACTTTTTTTGCTTGAATGTAGAAAAGCGAAAAACGGTTGGGAAAATTTCGGCAGATGCCTTTATTATTAAGGACTTTAGGGATATAATGAAAATAAGGAATGGGTATTTTACTGTG # Right flank : GATGACAGTAAATATGAGCTTTAGCATGATAGAATATATGGGATAAAATGTTTATCACATATAAATGGAGGAATGATGCTATGGGAGAATTGTCCACCTTGCCCAATATTGGAAAAGCAGTTGAACAACAATTAAATCAAGTTGGGATAGAAACAATAGAACAATTAACTGATATCGGAAGCAGGGAAGTTTGGTCGAGAATAAAAAGCATTGATCATTCTGCATGTATAAATAGGTTGTATGCTTTGGAAGGTGCCATAGAGGGAATTAGGTGGCATAATCTTTCAGAAGGAGTAAAAAAGGAACTGAAAGATTTTTATAATACATTTAAATAATTGTGCAATTAAATGGCATAATGAAGTATAGGGTTTCTAATTGAAGTCAACTTCCAAGTTAGAAATCCTATATCTTTAAAAATTAATATTAGCGCCCATAAAACTGTAGATATTTTTCAATGTTTGATTTTATATATTCGGCACTGTGGTTACCACAAAATACGT # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACCTTAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA //