Array 1 91944-91653 **** Predicted by CRISPRDetect 2.4 *** >NZ_FXXW01000082.1 Akkermansia muciniphila isolate Chimpanzee_2_2.fasta, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ================================== ================== 91943 31 100.0 34 ............................... AAATTTGTTGAACTTCCCCTTCCCGTTTTTGATA 91878 31 100.0 34 ............................... ATGAGGACGACCTGATAATTCCGCAGGGTGGGAA 91813 31 100.0 34 ............................... AGAACCAATGAAGGTCTTACCCAGTCCCATATCA 91748 31 100.0 34 ............................... CAACAAACCGATACGTCCCCCAAGTTGTTTCTTA 91683 31 90.3 0 .........T...................GT | ========== ====== ====== ====== =============================== ================================== ================== 5 31 98.1 34 GTCGCACCCACACGGGTGCGTGAATTGAAAC # Left flank : ACTGCCCTGTAAGAGCGAGGCAAGCTTCTTCTATTGAGCCTTAAACAGGAGCCGTCCGTAAGGGCGGCTCCTGTTGCATGGCGGCGCAAGTGGAATGCAGGTCAGTTGACTGCCATTAGGGTGGCAGCAAGGCATGTATATAGATCCGGATATTCCTGTTTTCCGGTAGGTGAATTCCTGGTTTTGTGAAGGAATGAGGAAGATGTTTCTGGACGCAGTAAAAAAGAACGGTTAGCATCAATGAGCCAAATTGAGTGCAAGCTGGCTCGGACGTGAAGTAACTGAGGTTTTCTAAGATGATGCCACATCGGATGCTGCGCTTGCGCCAACCTCAAGCTCACAGAAAATTTCCGGGAATCCGGCGCATGCTGTAAGCGATTGAGAAATGTAGCTTGACAGAAAAATTCCCTTTGATCAGGCCTGACCGCATCTGGTTCTTGCATCAGGTTGGCGCAAGACCTTTGTTGCATGTTTGATACTCAAACCGTATTCGTCAGGCC # Right flank : TTTTATGTATGTTTGACATATTTAAATACGAATCGTTGTTTTATTAAGGGAGGGAGATATATTGAAATAAGGGTATTTGTTGCTGAAGAATGAAAGATGGATTTTTGTGTTTTTTGTTGAATGCAATATTTTGACGGAGGAAGTTGGTTTTTGGCTGATAGAGGAGAAATGACGGGAAGTATTATTGGACGAATATGAAAAGATATTGTCTGGTTTCCGGGTTATGTTTGTGCCTGTTCATGGGGATATTTTCATGTATTCCGGAAGCTCCGGAGCATAAGACGGAAAAAGATGCCTCAGCCATTGTTCTGGATGAGGATTCGGATATAATCTGGAGGAATTTTTCTTTGGGCTGCGTTTCATTCGATGATAAGGCTCCGCATAGTAAAGGTTCCCGCATTTTTCACCGATTGATTCCAGATACGGAGGTTTATATCCGTCAGTTGTCCCGTATTGTTCTCCATACGTTGTATGAGAGTCCTGAAGAATGTATTGTTCCT # Questionable array : NO Score: 8.96 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCACACGGGTGCGTGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTCACGGGTGCGTGGATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.70,-5.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 3075-3835 **** Predicted by CRISPRDetect 2.4 *** >NZ_FXXW01000001.1 Akkermansia muciniphila isolate Chimpanzee_2_2.fasta, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 3075 36 100.0 30 .................................... AAGAAACCCGAACCAATGAAGAAGAAACCC 3141 36 100.0 30 .................................... CGGGGAACGGAACGTTCATGGCCCAGTATG 3207 36 100.0 30 .................................... TGAAGCGTTGAATACGGTTCGGGATTTTCA 3273 36 100.0 30 .................................... CGAAGCTTTACGAATGGATGGGAAAAACGG 3339 36 100.0 30 .................................... GGTGGAAACAATCACGGAAGAAGAGCGCAT 3405 36 100.0 30 .................................... CTCGTCACTCTTGCCCGCTTCCTTCTGTTC 3471 36 100.0 30 .................................... GGGTGCATGTGTTTAAAGTGGTTGGCGAGG 3537 36 100.0 30 .................................... GCACAGACCAGACGAGGCTGAAACAGACCA 3603 36 100.0 30 .................................... CCCATAGGTCTCACATTCAGCGGGGGTTAG 3669 36 100.0 29 .................................... TTAACGTGAAGGACCCGTTATTTCCGTTC 3734 36 100.0 30 .................................... GGGGGCGTCATCCGTCCACCGCACACCGGC 3800 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 12 36 100.0 30 GTTTTGCCTTGAATCCAAAATAAGGCACAGTACAAT # Left flank : CTGACCTGGAAGCACATCAACCTGAAATCCGGCCTGGTTTCACTGGCGCCCACCCATACCAAAACAGGAGGGAGCCGCCATGTTTCCATCCTTCCCGTGCTGGGCTCCATCCTCAGCCGGACGTCTTCCGCCTGCTCCCCCTCCCGTCCCGTTTGCCCGCCCAACTGGGAAAAGAAATGGAGGGAAGTAAGGCGCCGATCCGGCATCCTGAAAAAAAGCGGATGGGTACAGGACGTGCTGAGGCATACCTACGCCTCCTACCACCTGGCCCATTTCTGCAATCAAAACCTTCTTCAGAAGGAGATGGGGCACTCCTCCCCCTCCCTGCTTTTGGCCCGCTATCTTAACATGGACGGAATCACCTCCGCAACCGGCGCCATGTTCTGGACGCACAGCTTTGTTTCTCCCGTTCCGTTAAAGAAAGACTGACAAAAATCCGTCTGGAATTGCGCGGCCAAAGGCGGAGCAATCCCCTGCTCCATCAGACCGGAGGCGCATTT # Right flank : TGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGTTTTGCCTTGAATCCAAAATAAGGCACAGTACAATTTAACGTGAAGGACCCGTTATTTCCGTTCGTTTTGCCTTGAATCCAAAATAAGGCACAGTAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTGCCTTGAATCCAAAATAAGGCACAGTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.50,-4.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [38.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0 Confidence: HIGH] # Array family : NA // Array 2 4302-4930 **** Predicted by CRISPRDetect 2.4 *** >NZ_FXXW01000001.1 Akkermansia muciniphila isolate Chimpanzee_2_2.fasta, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 4302 36 100.0 30 .................................... GGGGGCGTCATCCGTCCACCGCACACCGGC 4368 36 100.0 30 .................................... GTTGCTTAGCTTGCCAAGACTGACGCATGC 4434 36 100.0 30 .................................... CACTAGTCCGCAAGGTTGCCACCCGATTGC 4500 36 100.0 29 .................................... GGGGAATCCGGGTGTGCCGTCTCTCTCTA 4565 36 100.0 30 .................................... CATTTTCCGAGGTACGGGCAACGGCACCAA 4631 36 100.0 30 .................................... GAAAAATGCGGGACTAGGACGGCCGTATTT 4697 36 100.0 30 .................................... CAACCATGCAACGGGAACATACCCGTAGAA 4763 36 100.0 30 .................................... CCCTACCGTTCCCGGCTGATGACATTTTCC 4829 36 100.0 30 .................................... CCCTACCGTTCCCGGCTGATGACATTTTCC 4895 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 10 36 100.0 30 GTTTTGCCTTGAATCCAAAATAAGGCACAGTACAAT # Left flank : TTTGCCTTGAATCCAAAATAAGGCACAGTACAATGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGTTTTGCCTTGAATCCAAAATAAGGCACAGTACAATTTAACGTGAAGGACCCGTTATTTCCGTTC # Right flank : TAACTTGATGAAGAATACGCACGTTACCGAGGTTGTGGATTCTCCCCGCCCGGGTTATAGCAAGAACGGCAAGAAGCTGGGCCGCCCATCCAATGAACGTCTCGCCAACTTGAAGGCGCAGAACCAGAACCTCCGCGAACGGTATGAACTTAGCCAGAAGCGTGACCAGCTGAACAAGTGCATCGACAGTCTTGACTGGATTATCGACTTGCAGGAAGAAGAAGGTGAATACTAAATCTAACCTCTTATGCCCAAAAGACTTATGACATTGGAAGATACAACATACTCTCAAAGATTTAGGGATAACCTCGAGGACACGTTGGAGCAGATGCTTCCGGTTCTCTCATTCATACCCTTTGTCCTTACCCTAGTGGTTAAAGGGTATTCTCCTGAATATTCGTGGATGACGTGCTTCTTAGCGGTACTCGGCAGTCACGTGCTTCAAATTCTCTTTGTTGTTACGGTGAACTCCATTCCGAAGAAGGATTCTTTCTTTTTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTGCCTTGAATCCAAAATAAGGCACAGTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.50,-4.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [58.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0 Confidence: HIGH] # Array family : NA // Array 3 5955-6450 **** Predicted by CRISPRDetect 2.4 *** >NZ_FXXW01000001.1 Akkermansia muciniphila isolate Chimpanzee_2_2.fasta, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 5955 36 100.0 30 .................................... ATAAACGTCCGAGGGAATAAACCTCCATGA 6021 36 100.0 30 .................................... TCCAAGTTGACGCGGTCAAGTTCCGCCTGG 6087 36 100.0 29 .................................... CGACGCTCTCGTGATGGCCTGGCACGCGC 6152 36 100.0 30 .................................... GTTGCCGTTAAACGTCTCTCTCAAGTCCAT 6218 36 100.0 30 .................................... TGGACATGATAAATATGTGGGACGGGGTTA 6284 36 100.0 30 .................................... CGGGCCGCAAGTGAGAGCCTCAACGGCGTC 6350 36 100.0 29 .................................... AAGCTGGTTAGTCCCGTTCGACGTGATTA 6415 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 8 36 100.0 30 GTTTTGCCTTGAATCCAAAATAAGGCACAGTACAAT # Left flank : CTTAGTCCCTTTACTCTGCCTCTATTCGATGAAGAGCTAATCATGAACGACCTGTGGAGCTATTACAAAGAAACGGACAATAAATCTAAACACATTGACAAGTAACTATGGACTACTCTCAAAGATTTAGGGAAAACCTCGATGCCACGCTGGACGCTCTTCCGTATTTCTCAATCATCCTCTTTGTCATGTCTGTAAAGATTAAAGAGCATCTTCCCGAATGTCCGTGGATGACGTGCTTCTTAGCGATGCTCGGCATTCACGTGCTTCAGATTCTCTTTGGTGTAACGGTGTACTCCATTCCGAAGAAGGATTCTCTCTTCTTTGCGATTGTCGTCCTCGCCGGTATCATCTTAATTCCTGTACTTTGCCTCCACTGGATGAGGGTCTAACTTCGAACAACAGTAATACCCAAACCGCTTATGCCCAAAAGACTTATGAAGATGAAACCCAGTATGACAGGATATGCTATCCGATGGCTCTGCGCTTGTGGAGCCGTA # Right flank : TAGATACTGTGCCTTATTTTTATGTTCAGCGACTTATAAAAAAATACGGCGTCCGATATTTTTACCAGAGGAGCATCTGCTGAGGAAGGGAAACCTCCTGTCGGGGACAAGACCTGCCATGAAAAACGAACATCTTATCCCACTGGATATTCGTAACGAAAAGACAGCGGACAGAACCATCAGGCGGTATCATTTTCTGGATTCTGCGGGAGTGGGTAGCTATTCTTTCCTGAGTAACACACGCGCGGGCATAGACGCTATACTGAATCATCGTATAGCCGTCTTCTAAAAGAGCCTTACGGAAATACTGATAGTTTTTTTTATCTTCCGGCGTGGTTGTGGGAAGATCAAAGAACACAACTAGCCAGCCCATTTTATAGTTGTCATATGCCATGGTTCATACGGTCCGGATTGCCCGGCAAGAACTGCTTTGCGGAAACTGCGGCAAACGGCCTCTACCGCCGCTTTCAACGGCATCTGTTTGTTCTGGTGCATAACAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTGCCTTGAATCCAAAATAAGGCACAGTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.50,-4.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [50.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0.27 Confidence: LOW] # Array family : NA //