Array 1 56743-52801 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEMNU010000102.1 Rugamonas sp. CCM 8940 GCM70008120_102, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 56742 32 100.0 35 ................................ GCGCAGGAGACGGCGATGCGGGCCGGGGAGATATG 56675 32 100.0 35 ................................ GCCTATACTCATATTGCAGGCGCGCATCATGACTG 56608 32 100.0 34 ................................ TGGACCTTGAGCATGGCCACCGACCAAGGCAGCC 56542 32 100.0 33 ................................ CTGCTTTTGCTGCGGGCAATAAAAAGCCGCCTC 56477 32 100.0 35 ................................ CCCGTACAGCGGGTCGGTAGCGCTGCCGTCGCCAG 56410 32 100.0 33 ................................ ATTAGCCCATCACGATGGCGACGTGCTCACCCT 56345 32 100.0 33 ................................ CATGTACAGGGCGAATCCCTTGACCGTCAGGTC 56280 32 100.0 33 ................................ CAGTCAACGTAGTCGGTGTTGGTGATCTGCACC 56215 32 100.0 33 ................................ GACTTTGCCGGCATCGACCAGCTTCTTGTCGTC 56150 32 100.0 33 ................................ CAACATAAACTTTGTCGTTGACCGTATTGCGGA 56085 32 100.0 35 ................................ TTTGCGATCTTCTTTCGGGATTCCTCTGAGTGGGT 56018 32 100.0 35 ................................ TTTGTGCGGGCAAACATGCCGATCAGGTGCGCGCC 55951 32 100.0 34 ................................ GTTGATGACACGCTTGAACTTGGCTTCGTCGAAT 55885 32 100.0 34 ................................ GATTTTTTGCTTGTCTCTTGCGGCCCATTTAGTC 55819 32 100.0 33 ................................ GCGTTACCTGCATCGGGCGCCACCAGATCTCCG 55754 32 100.0 33 ................................ ATGATGGCGATCTCGCTGCTTCGGCAGCCCCAG 55689 32 100.0 33 ................................ TTTCCCGTTGACGATCATGCCGCCACCGCCTCA 55624 32 100.0 34 ................................ ATCGACAAGTCATCGGGTGCCGCATGAGCGACCT 55558 32 100.0 33 ................................ ACCGATACCCAGAAGTCCACCATCCTGGGCTGG 55493 32 100.0 34 ................................ TGCGGCCGCACGACTGGCCGGTACACCGTCGGCT 55427 32 100.0 34 ................................ GCGCTGGGGATGATCTTGTCATCTCGCTGCGGGA 55361 32 100.0 35 ................................ TCTGCAACCAGAGCCGCCTTTACTCTCGCCGCACG 55294 32 100.0 33 ................................ ACGACACCGAAGATGGTCCGTACTGGGTGTGGG 55229 32 100.0 36 ................................ ACCCCGACGGAGCTGGGCCACCGGCGCTGCGTCAAC 55161 32 100.0 34 ................................ CGATGCAGGAAAGGATTTGGCAGCGAACAGCAAG 55095 32 100.0 35 ................................ ACCCCGACGGAGCTGGGCCACCGGCGCTGCGTCAA 55028 32 100.0 33 ................................ AAGGATTACGTTTTGGGCCTGGCTAATTCCGGC 54963 32 100.0 34 ................................ TGAGCAGTGCTGCCCATGATCGCCGCCGGCACCA 54897 32 100.0 34 ................................ ATGGTCGGCCATGGCAAGGCTCACTGTACCGTTG 54831 32 100.0 35 ................................ TGACGATCAAGCCCGCGCCCTGCTTGCTGCACAGA 54764 32 100.0 35 ................................ GACGGCGCCATGTTCATGGTGCACAAGGCCAGCGT 54697 32 100.0 35 ................................ CACGTGGGACAGTCCGGCACAACACTGGAGGCAAG 54630 32 100.0 37 ................................ AAGCAGATATCAGCAGCCTGGAACGCGCACCTGTACG 54561 32 100.0 35 ................................ TGTAACGTGCTATCCCACAGGTCAAGGGCGTTCGG 54494 32 100.0 33 ................................ AGCGCCTGGCCCTCAGTCGCGGCGAGGTCCAGC 54429 32 100.0 35 ................................ GGGCAGATCATGCCGGCACAGCTCGCCGAGATGAA 54362 32 100.0 35 ................................ GTCTCGATCAGCGTGTCGGCAATCAAGTTGACCGG 54295 32 100.0 33 ................................ ATATGGCGGCTCTCAGCGCGCGCAGGACGTCGC 54230 32 100.0 34 ................................ ACCGCCGCGCCGCAAGCTGGCGCGCGCCGCCGGG 54164 32 100.0 34 ................................ ACTACCCCCGACGGCGCTACGTTACTGACGATCA 54098 32 100.0 35 ................................ TGGAATCCCCACCTTGACTGCCAACGGTGGCAAGG 54031 32 100.0 34 ................................ AAGCGGCCCTTATCACCCTTGGCGGATTCGGCGG 53965 32 100.0 34 ................................ TACGCGACCGGCACGCCGAACGTATTTTCGGTGC 53899 32 100.0 35 ................................ ATCGCTGCTATGGGCGGCGTGTACTACTCGCTCAA 53832 32 100.0 34 ................................ TACGGTCACTGCGTCCGCTTGGTTGTTGGTGATT 53766 32 100.0 35 ................................ ATCGCCCAGTCGCGTAGCGACCAAGGGAGCGTAAG 53699 32 100.0 35 ................................ TCTGTAATCGCCACCGACATGACGGCGCTGGGCTG 53632 32 100.0 34 ................................ ACTTTTAGGATTTCACCCCAGTCAGCAATGCGGA 53566 32 100.0 36 ................................ CACGTGGAACATCCCGGTACAACACTGGAGGCAAGC 53498 32 100.0 33 ................................ TTGATGTGGCCAAGCTGCGAACCCGCCTGCTTG 53433 32 100.0 34 ................................ CGCCAACAGCGCCTAGGGTTGCGCCGTCTACCAC 53367 32 100.0 34 ................................ AAGTCAGCGCGATATTCGGCGCGGCCCAGCGCTT 53301 32 100.0 36 ................................ ATTCCACCAGTTGCACAGCAAATTAACAGCGTCAGG 53233 32 96.9 35 ................A............... GCCAAAAAACGCCTTGGCCGGCCTGGGCAGGAAAG 53166 32 100.0 35 ................................ AACAATGCGGTAGGGCCCCAGGTGCGGGCCAAGAA 53099 32 100.0 34 ................................ ATGAACATGACGGCTAGCATCCTCGGTGCCGTGC 53033 32 100.0 35 ................................ ATCCAGACGTCCTTGGCCGGCTCGCCGAACTCCGT 52966 32 100.0 35 ................................ GGCACCAAGGGGTTGCGCATGTCGGGCAGAGCCTA 52899 32 100.0 34 ................................ AACATGATGTCGCTGCCTTTTGGTACAACCGGCT 52833 32 78.1 0 .....AC..A..A.......TG.........T | G [52804] ========== ====== ====== ====== ================================ ===================================== ================== 60 32 99.6 34 GTCGCGTCCCGCGTGGGCGCGTGGATTGAAAC # Left flank : TCCACCATTTCTTTGGAAGTGAGAAATAAGTATGATGGTATTGGTTAGCTATGACGTCAGTTTCGGCGACAGCGACGGCCCGAAACGCTTGCGGCGCTTGGCCAAGGCCTGCCTAAACTATGGGCAACGGGCACAATACTCGGTGTTCGAGATCGAGGTCGATCAGGCCCAATGGACATTCCTGAAGCAGCGCCTGTGCGACATCATCAATCCCGATTGCGATAGTCTACGCTTCTACTATCTTGGTCGGAATTGGGTGAATCGAGTGGAACATATTGGTGCCAAACCGCTGCTGGACCTCAACGGTCCATTGATTTTATAGCGCAGCGCGAACCATAAGCGGCCAGCGCATCCCCTGTGGGTTCGCGCTTCCCTAACATATTGATTTTCTTCAAAAAAATTCCCATACTTGAGAAATTTTTCGATATCAAGGGCGAGTATGTGCGGTTCGCAAAAGTCGGGATATTTCCTTATTGAATTGAATGGGTTATAACTACCAA # Right flank : TCCGAATTCGATGAATCTGAGCTAAATTGACCATCTACCGCCGCTAGCCAAGTATCACTCAAGTATTGTCAATCGATACTGCCAATATCAGTAAAATTTTGCTCTCGTTCAATGTAGCCAGGCGTGGGCAGCCGTAGAGTCAAGACATTTCAAGCACTCTCCAAAGGGGATGAAGAAATGTCATATTCATACTCAAAAGTTGACGACTTGGAGAATTCCAAGATGGTAGGCAACCATCAGTGCGTTGCCTTGGTACGCAACTATGCGGACGCTCCGCCCACGTTAGCTTGGCGACAGGGCGAAGCCGTTTTTGGCAATCGCACATTGAAGAAGGGTACGGCCATCGCGACTTTCGTCAACGGGAATTACGCCAACCACAACCACGGAAACCATGCGGCGCTGTACATGGGGCAGACACCTAGCGGCATCCTCGTGATGGACCAATGGAAAAACAAGAAAGACCAATTGGTCACATCACGTGCAATCCGCTCTAAAGGAAA # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGTCCCGCGTGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGCCCCGCGTGGGCGCGTGGGTTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.00,-10.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 68320-65844 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEMNU010000102.1 Rugamonas sp. CCM 8940 GCM70008120_102, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 68319 32 100.0 34 ................................ CGCTGCACCAAGTAGCCCGGGTCGCTAGTCCCTG 68253 32 100.0 34 ................................ CCGTTCGCGGCGGCGGTCGGGATCGACGGCATGC 68187 32 100.0 35 ................................ CCCGTACAGCGGGTCGGTAGCGCTGCCGTCGCCAG 68120 32 100.0 33 ................................ AAGCAGCCCGGCACCTACGTCGGCGGCGCCGTC 68055 32 100.0 34 ................................ CTTAGTTATTTGATGTCGGCGATGATGCTTCGGA 67989 32 100.0 34 ................................ GTGATCGACATCGGCAAGATCAGCCTGAAGGACC 67923 32 100.0 34 ................................ ACAAGCCGCCAAAGGGCTACACCGGCGGCCGCTT 67857 32 100.0 35 ................................ CTGCGCAACGAGGCAATCGCCAGCGCTTCCGGCGA 67790 32 100.0 34 ................................ TCGTACAGCGGGTCGGTAGCGCTGCCGTCGCCAG 67724 32 100.0 35 ................................ TGGAGTCAGTCGATGCGGCTGCGCGCCAGGCCGCG 67657 32 100.0 33 ................................ ACCACCGCAACTGGCCGCAACGGCGGAACCTAC 67592 32 100.0 33 ................................ AACCGCTCGCTGGCCGACGCTGGCCTGCAAGAG 67527 32 100.0 33 ................................ GCAGCAGCGGCAAGAAGCCCAGGGAACCGGGTC 67462 32 100.0 35 ................................ TGGCATCCCCACCTTGACTGCCAACGGTGGCAAGG 67395 32 100.0 35 ................................ TCGGTAACGGCCGGCGCTAACATGATCGTCAAGGG 67328 32 100.0 34 ................................ AACAAAGACACGCCCAGCAGCTCGAGCAGCACAA 67262 32 100.0 34 ................................ AACGGAACATTCCAACTCGAATGGCCAAACGGCC 67196 32 100.0 34 ................................ AACGGCAACGTGTTCCAGTGGGTCTTCGACGACG 67130 32 100.0 34 ................................ ATGGCCTCGACGGGGTCGGTGTCGTACAACTGTT 67064 32 100.0 34 ................................ TTGCACATCGGCGGCTACCCAGCGGCGCGCCCTT 66998 32 100.0 35 ................................ CCAGCGTGCGCTGATGGCCTCGGACTCGCGCAGAC 66931 32 100.0 35 ................................ CGCGCCCGGCGTCATGGCCGAATCCATCCCAAGGT 66864 32 100.0 35 ................................ TTTCTCCGCCGCGATCTCAGTAACGACGTCCGCAG 66797 32 100.0 34 ................................ GTCTGCGCCGGCCTTCTTATCGCCCAACATCTGG 66731 32 100.0 34 ................................ TCCCGCTGGTCGCTGCCAACGGTCTGCTGCAAAA 66665 32 100.0 34 ................................ TGCGTCGTGGAGCAGTTCCAGCAGCGCTGCTGCC 66599 32 96.9 34 ................C............... CACCGGAACCTGCCCCTCCGGGGGCGTGGGGGCA 66533 32 100.0 34 ................................ ATGCATGCACAAGGCCTCGCCGTCGTGGTTGATG 66467 32 100.0 34 ................................ ATAACAACAGTCAACGTGATGATCGTGCCAGTGA 66401 32 100.0 34 ................................ CCCAGCATATAGGCGGGCAACCTTGACCGGCCGG 66335 32 100.0 33 ................................ GACACGTTGCCCGCCGACCACGTGCGCCTGGGC 66270 32 100.0 33 ................................ CGCAAAGCCGGTGCCGAAGTTCGCCAGGCACAC 66205 32 100.0 33 ................................ GCCAGCGGGAAGTGTGAAATTATTTTTAACGTC 66140 32 100.0 34 ................................ AGCACAGGGCGCTTTGCCGGAACAATCGTCGCTG 66074 32 100.0 35 ................................ CCAGTGTGGCGGCGGGCGCGCTGGAGGCGCACCCC 66007 32 100.0 34 ................................ CTTGTCGACGGCGCCAAGGTGCCTTGGCGTACCT 65941 32 100.0 34 ................................ AATGTGTCGCTGTTCGGGGAGGGCTTCGACCCGA 65875 32 87.5 0 .......C...T.....G...C.......... | ========== ====== ====== ====== ================================ =================================== ================== 38 32 99.6 34 GTCGCGCTCCGCGTGGGCGCGTGGATTGAAAC # Left flank : CCACCATTTCTTTGGAAGTAAGAAATAAGTATGATGGTATTGGTTCGCTATGACGTCAATTTTGGCGACAACGACGGCCCGAAACGCTCGAGGCGCTTGGCCAAGGCCTGTCTCAACTATGGGTAGCGGGCACAATACTCGGTGTTTGAGATCGAAGTCGATCAGCCCAGTGGGTATTCCTGGCGCTACGCCTGTACGACATCATCAATCCTGCTTGCGATAGTCTGCACTTCTACTATCTTGGTAGGAACTGGGTGAATCGAGTGGAGCATATTGCTGCCAAACCGCTGACGGACCTCAACGGTCCATTGATTTTGTAGCGCAGCGCGAACCATAAGCGGCCAGCGCATCTCCTGCGGCTTCGCACTTTTCTAACATATTGATTTCCTTCAGAAAATTTCCTTGCCTTACGACTGCGGCGATAACAAAGACAAAAAATATGTCCGGTTCGCAAAAGATGGGATATTTCCTTATTGAATTGAATGGGTTATAACTACCGC # Right flank : GCGCTCCTACCGGACTTGACCTTGATGCGCCTTTACACCGCATCCTGTCTAGCGCCGCTTGGGTTCCCGCCTGCCCGGCGGTCGGTCCATGCGGGACGACGGGTTTTGGCGACTCCCATAAAGCAATTCAAGTAAGGAATCATCCATTCCCATCCCTAACGAAATTGATATTTATTAGCAATTTAAAAAATATATAATCTATAACAAGACTTTTATCTAAAAGTAACCTATCGTAAGAAAAACCCACAGCAGTAACCACATCAACCAACAAATACTTCCCCCCGGCATGAATCGAACTGAGCGCATCTATAAAATCGAACGGCTGCTACATGATCGAAGTATCGTTCCACTTGCGGCTTTTCTAGATGAGCTGGAAATTTCAAAAGCGACTTTCAAGCGGGATTTGGAGTATCTACGGGACCGCATGAACGCGCCCATTGTTTGGGACCGCGAGCACGCCGCCTATCGTTTCGACAAGCCAAATGAGGGCATCAAATATG # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCTCCGCGTGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGCCCCGCGTGGGCGCGTGGGTTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.30,-9.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //