Array 1 477215-478401 **** Predicted by CRISPRDetect 2.4 *** >NZ_NBRQ01000002.1 Salmonella enterica subsp. enterica serovar Thompson strain NY_FSL S10-1568 NODE_2_length_712765_cov_36.3759_ID_3295, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 477215 29 100.0 32 ............................. AATACTATCCTGCAATGCGCTACCACGTTACT 477276 29 100.0 32 ............................. TGATAACGCATGGGAGTCCAGATTACAAATTC 477337 29 100.0 32 ............................. TGCTGGATACACGCGTTTCAATGGTCAGAGTT 477398 29 100.0 32 ............................. CAGCTCTCTAACGACTTCCCCGGAGTACGTAA 477459 29 100.0 32 ............................. CTTGTCGGCGTTGCTCACGTGACTATTTCGCA 477520 29 100.0 32 ............................. ACCGTTATCTGCTGGTTGATACTTCCCCGAGC 477581 29 100.0 32 ............................. CCGCAGAACGCCGCATCGCCGAACTGGACAAA 477642 29 100.0 32 ............................. TGCCGGTTTATCTGCTCCAGACCGATCGACTA 477703 29 100.0 32 ............................. TCCGCGGTGATAGTATGCGGGGAACTATAGAC 477764 29 100.0 32 ............................. GGAAACGAAGATGACCTTTATTAGAGATATCC 477825 29 100.0 32 ............................. TGCTGAATCTTTGCGAGTGGGATGATGGCACT 477886 29 96.6 32 .....T....................... CCGCTACGATCTATTCGAATCATAGTGGTGCG 477947 29 100.0 32 ............................. GCGTGCGCCGGGATATTGCGCCGCGCCGAGAA 478008 29 100.0 32 ............................. TCCTTTTATTCTAATGGGTTAGATAGGGTAGA 478069 29 100.0 32 ............................. AAAACTGCACCGCCGCTGCCACTGAGTTTGCT 478130 29 100.0 32 ............................. AAAACTGCACCGCCGCTGCCACTGAGTTTGCT 478191 29 100.0 32 ............................. GCGCAGAATTTACAGGTGTCACTGTTGTCCGG 478252 29 100.0 32 ............................. GGCGTGGTGTATATCGGTCTTGATGCGTTGTC 478313 29 100.0 32 ............................. GTCACGAGGTCTGACGCGGATGTGATGAGTTA 478374 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 20 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGAAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 494572-496068 **** Predicted by CRISPRDetect 2.4 *** >NZ_NBRQ01000002.1 Salmonella enterica subsp. enterica serovar Thompson strain NY_FSL S10-1568 NODE_2_length_712765_cov_36.3759_ID_3295, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 494572 29 100.0 32 ............................. AGTTTATTACCCCGCCATTTTTCAGTCGTCGC 494633 29 100.0 32 ............................. CGGTACGACGTAAACTGCGCGCCCGGACTGAT 494694 29 100.0 32 ............................. GAGGCTATCGGGACACAGGCAAACGTCGTGGC 494755 29 100.0 32 ............................. TAGAGCCGTGTGTTAGCAGATAATCAGTATTA 494816 29 100.0 32 ............................. AAGCCGGACCACATTTTTCTTGCCGAACTCAC 494877 29 100.0 32 ............................. GCTGTTGCCGACGTCGGGCTTAAACACCACTG 494938 29 100.0 32 ............................. GACGCTTCACCTGCATCAAATTCTCCTCCAGT 494999 29 100.0 32 ............................. GCGGGCAACAATTTTAGAGGGGCTGCATTCGC 495060 29 100.0 33 ............................. ACTACATAGATAACCAAAAATCCACTGGCAAGC 495122 29 100.0 33 ............................. CGCACGCGGGTTGCGTAACGGATATACGACAGC 495184 29 100.0 32 ............................. TCGCAGAACAGCTCTGCTTCCTTTGCGGAGAC 495245 29 100.0 32 ............................. TTGCGCTGTTCTATTGGCGGCAATTCTCTGAA 495306 29 100.0 32 ............................. GGACAGCACAGTTGATTACAGCAAAATTTACG 495367 29 96.6 32 ............T................ ACACGCCAGCCAACAATATTAATTTTGTCGTC 495428 29 100.0 32 ............................. CCTTGGCGGCAGCCACCTGAGCAACTGTCGGG 495489 29 100.0 32 ............................. CAGCTTCTTAACGAGGAGATTAACAGCGACGT 495550 29 100.0 32 ............................. ACTGTAGTTGCGGGTCAGGTTCCGGAATATCA 495611 29 100.0 33 ............................. GGATAGGGATCGGTAACTTTGCCATCGATCGGC 495673 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 495734 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 495795 29 100.0 32 ............................. CACCCAGCGGGTAAACTGATCAGCAGCAGCAC 495856 29 100.0 32 ............................. AACCCTCAGAAAATAATCCAGACGTTACCGAA 495917 29 100.0 32 ............................. GCAGAAACAGAAACCGGATATGAGCCATCCAT 495978 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 496039 29 93.1 0 A..............A............. | A [496065] ========== ====== ====== ====== ============================= ================================= ================== 25 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAATCTGAATCACTGGGTGATAGTGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCTCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGAAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //