Array 1 1307910-1308914 **** Predicted by CRISPRDetect 2.4 *** >NZ_VBVB01000002.1 Escherichia coli strain LL2 chromsome_contig_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1307910 29 100.0 32 ............................. CCTCCCCGCTCACGCCAACGTTAAACGTTATC 1307971 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 1308032 29 100.0 32 ............................. CTATTGCTTTCGTACAGATTTTCAGTGGTGCT 1308093 29 100.0 32 ............................. AAAATTCTGTGTTTCGACCATTACTTCGGTAA 1308154 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 1308215 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 1308276 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 1308337 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 1308398 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 1308459 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 1308520 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 1308581 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 1308642 29 100.0 32 ............................. CCGAGCCCGATTATCGGCATGAGCGATGCGGA 1308703 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 1308764 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 1308825 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 1308886 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 17 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1324416-1325786 **** Predicted by CRISPRDetect 2.4 *** >NZ_VBVB01000002.1 Escherichia coli strain LL2 chromsome_contig_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1324416 29 100.0 32 ............................. CTCCGACTTACCGTAGTGATGGCGCGCTGCCA 1324477 29 100.0 32 ............................. AATTTCTGGAAAAAAACAAATTCAAAAAATTG 1324538 29 100.0 32 ............................. TGACTGCGGTTCAAAATCTCCGGCACACGTCC 1324599 29 100.0 32 ............................. GCCGCGCCGCACTGGCGCTGGCACGGTATGCA 1324660 29 100.0 32 ............................. CCCTCACGGGCTATTTGGTTAATCGAAAATTA 1324721 29 100.0 32 ............................. CCAGCCCTTGTTAACGTCTTCGCCGTTCGGGT 1324782 29 100.0 32 ............................. GTTATTTTTTCACTAATTTCGGTTAGAGGGAT 1324843 29 100.0 32 ............................. GGGGATTCGCGTACCTGCGCGCCAGTTCCCCG 1324904 29 100.0 32 ............................. ATCACTATCGTGATGCTGACGGCGCACAGCTC 1324965 29 100.0 32 ............................. CCATAATCAAAAGCGGCCAGAACTGCCATTTC 1325026 29 100.0 32 ............................. ACAAAACGCGATCAATACAGTTTTGTTTTGCA 1325087 29 100.0 32 ............................. ATACCCCAGCGTTTCGTTATATGACGGAAGAT 1325148 29 100.0 32 ............................. GGATTTGCATTAACGCGGCGTGAACATTATTT 1325209 29 100.0 32 ............................. CTGCAATCACCAGCGGCGCGGCGTGGTTTGGT 1325270 29 100.0 32 ............................. CGTCACCACGCGCGCTACAGGTAATGCAGCTC 1325331 29 100.0 32 ............................. GGGATGAAATTGAACTTCCAGGCGACCGACAA 1325392 29 100.0 32 ............................. ATTGATAACTCGCGCTCATCCATTTTGAATTA 1325453 29 100.0 32 ............................. GTCTGTGATGGTCTGCTCGTGAGTCCGCGGCG 1325514 29 100.0 32 ............................. TAAACACAAGAAAAGGGCGGCACGGAGCCGCC 1325575 29 100.0 32 ............................. GATTTTTCGCGAACTATCCCGGCGTAATGCGG 1325636 29 100.0 32 ............................. AAAATTCCATTTTATTACTGTCGGCAATTTCG 1325697 29 100.0 32 ............................. GCGTGGCGCGGGGCGTATTCCCCGGCGAGTAA 1325758 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 23 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCCGGGAAGGCAGGTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //