Array 1 204653-206995 **** Predicted by CRISPRDetect 2.4 *** >NZ_QQCO01000001.1 Neisseria lactamica strain M37084 M37084_CHA4016A3_cleaned_ctg_2582, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 204653 32 100.0 33 ................................ GTTAAAGTTATGACAGTATTCCTTAGTTGGCAC 204718 32 100.0 34 ................................ TTTGTACTGGGGGACAATAGGAGCGACAGTTTGG 204784 32 100.0 34 ................................ ATTCAGTATTAAATCGGTACACCGCCTGTACCAT 204850 32 100.0 33 ................................ CCTATTGATTGGGTGCGCCTTGAGCTCCAGTGC 204915 32 100.0 35 ................................ CTGTTGGGAATAGCATGTGCAATCTGATTTTCCGC 204982 32 100.0 35 ................................ TATTAAAAAACTGCGACAGTGCGGCCCTGATGGGT 205049 32 100.0 34 ................................ GTGATGTCATACCGGAAGGCGCAGTGCTGATTGT 205115 32 100.0 34 ................................ CATTGGATGACACTCGGATTGCTGTCGCACCATA 205181 32 100.0 35 ................................ AAGGGTGTTCCTTGATTTGAATAGCATGTGCAATC 205248 32 100.0 34 ................................ TCGAACGCTATTCATTCTTGTCCAAAGCCCTCGA 205314 32 100.0 34 ................................ TTAACCACGCGTCCGCCCTAACGGGCATTAAGAA 205380 32 100.0 33 ................................ AAGTAATCCCGCGTCCCGATTTAACCCCCGGAA 205445 32 100.0 34 ................................ TTGGTACAAATGTGTAACGTCGTTGGATAATCCG 205511 32 100.0 35 ................................ ATCAAGTCGTTTTGTGCTTTCATCAATTCTTGTGA 205578 32 100.0 35 ................................ AATAATAGAACACGTGCTAACAGGTGCACGCTCTC 205645 32 100.0 34 ................................ GGTAATCCGGTATGTACTACCAAGTCGGAAATAA 205711 32 100.0 34 ................................ CCGTCAAATCCAAAAGACGGATGCGCCTGCCCGC 205777 32 100.0 34 ................................ CCGTCAAATCCAAAAGACGGATGCGCCTGCCCGC 205843 32 100.0 35 ................................ CTTTCAAAAAAGCCACCATATTTCAGGCGGCTTAC 205910 32 100.0 34 ................................ TTTTGCTTTGTCATAAATACGGGAAAATACGGAG 205976 32 100.0 33 ................................ GTCGATTTTGGCGCATCGTATTGCCGCGTTTAA 206041 32 100.0 34 ................................ TCTCAATTGACTTGCCGCTTGTGGATATGCGGTC 206107 32 100.0 35 ................................ CGAAAACGGTATTAAAAACTATGTCTGCTACGGAG 206174 32 100.0 33 ................................ GTTGATGATGTTCACGTTACCGCCGCCTCCGTG 206239 32 100.0 34 ................................ AATTTCGGCAATATCGCCGTTTCTTTCCGTGAAG 206305 32 100.0 34 ................................ CAGATTGGAAGTGCCTTAGGTTATAAAAATCCAT 206371 32 96.9 33 ......A......................... ATTTGCACCCATTGGGAGAACGGAGCGGGCGAC 206436 32 100.0 34 ................................ CAGTGTGTTGCGGGCGCGTTGCCCTTGACGGCTG 206502 32 100.0 33 ................................ CCTTTTAAATCCTAAAAGCCCGCGTTGTCCTTT 206567 32 100.0 33 ................................ ACAAGCGGAATCGCACCGTTATTGCGATATTTT 206632 32 100.0 34 ................................ AAGCTGAACAATCTGTACGTGTTGAGTTTCAGAA 206698 32 100.0 35 ................................ TTTTAATTCTTCCATTTCAAGCTCCTATCTGGTCG 206765 32 100.0 35 ................................ CTGTCCGTGGCGTAAGAACCACTACATAGGCGGCA 206832 32 100.0 35 ................................ TGAAACTGCGAAGCCAACCCCCCTTACTAACAGGG 206899 32 96.9 33 ........A....................... AAGGCAGAAATTGATTTTGATTTCGTCACCAAC 206964 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ =================================== ================== 36 32 99.8 34 TCAGCCGCCTCTAGGCGGCTGTGTGTTGAAAC # Left flank : CATGGAGGGACAAGAAAATGCTGATGTTGATAACTTATGATATTTCGTTGGAAAATGCCGAAGGGCAGGCAAGGCTGCGGCGCGTAGCGAAACTGTGCCAAGACTACGGCGTGCGCGTGCAGTATTCCGTGTTCGAATGCGACATCGCACCCGACCAATGGGTAGTTTTAAAAGACAAACTTTTAAAAACCTACAACCCCGAAACAGACAGCCTGCGCTTTTACCACCTGGGCAGCAAATGGCGGCGCAAAGTGGAGCATCACGGCGCAAAACCGGCGGTCGATATATTTAAGGACACGCTGATTGTGTGAATCGCCAACCTGTTGTTCCCATAAAAATGCGGCAGGGTTGGCGAATCTGGGTTGTTCTTTAACAATCAGGATATTGCAAATGTGGATATGGCGGATAAGGCTGTGCTATACTCATGTTTGTGCTTTTTTCGGGAGTTTGGCGAAGTCGGGGCTGCGAAGCCTGATGTAGTAAGGCTTTCGGAAGAGGCT # Right flank : CGGCGCGGACGACATCCGTTTCCTGCGCGAGTAGGGTAAAGGACAATCTAAATTCCCCCGGCAGCTTAAAATCTTGCCGGGTCTGCACAAAAATGCCGTCTGAACAGGTTTCAGACGGCATTTTGTTTCAATCGGGAATATCTTTGTTAAAAACAGGTTGATATTATCTGCACATATTAATATAATGATAATTATTATTAATCAAACAGGGAAAAAGTAGGGATGTGTAAACTGAATTATGGCGGCATTGCCTTGCTGCCGTTGATGCTGGCAGCCTGCGGCGGCAATTTCGGCGTGCAGCCTGTTGCCAAACCAACGCCGACCGCGCAAACCCCGTCAGATTCCAAACCTTCCAAACCTGAGGACGTTCCCACTCCGCCCCCTGCCAAACCTTCTATAGAAACCACGCCGGTCAACCGGCCCGCCGTCGGTGCGGCAATGCGGCTGTTGAGGCGGAATATCGCAACTTCTGATAAGGATGGCAATGATTTTCCAAATAG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCAGCCGCCTCTAGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched TCAGCCGCCTCTAGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.90,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //