Array 1 72713-74144 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAJGER010000012.1 Escherichia coli strain PLATE2_C2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 72713 29 100.0 32 ............................. CTGCAACAGAGATTTTAACCTCTAAAGCAGGA 72774 29 100.0 32 ............................. GATATACCATGTCATACAACCGACCGTAGCCA 72835 29 100.0 32 ............................. GTTATCTATTGTAGAGGGTGAAGGTTACAGCC 72896 29 100.0 32 ............................. TCTTGAAGATATCCAGCCCCAACAGCTGTCCT 72957 29 100.0 32 ............................. GCAAACAAAACGGCCACGTAAAGTGGAATGAC 73018 29 100.0 32 ............................. TGGCTATAGTATCACATGATTTCTATTTGTCA 73079 29 96.6 32 ............T................ ACGGCGTGGATTGAGGGACGGGTATTTGGTCC 73140 29 100.0 32 ............................. ACTCCGATAGCCTGCTCAGAATTAAGGCGCAG 73201 29 100.0 32 ............................. CCGCCGATTTCCCTGGCGTCAAAAGCGGTGAG 73262 29 100.0 32 ............................. CTCTTTCTCAGTCATCTGGCGCTCAACGCCGG 73323 29 100.0 32 ............................. GCAGCAATTGCCGGAGTTTTACTAATTGCCTC 73384 29 100.0 32 ............................. TGCGCCGTAGCGTGTCCACCTATTGTAGTAAA 73445 29 100.0 32 ............................. ATACAAACGCGGTGTTTATCAATATGAATTTT 73506 29 100.0 32 ............................. AAAATTCTGTGTTTCGACCATTACTTCGGTAA 73567 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 73628 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 73689 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 73750 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 73811 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 73872 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 73933 29 100.0 32 ............................. CCGAGCCCGATTATCGGCATGAGCGATGCGGA 73994 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 74055 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 74116 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 24 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 89646-90466 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAJGER010000012.1 Escherichia coli strain PLATE2_C2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 89646 29 100.0 32 ............................. CGTCGATTCATCGCCCCCGGTGGAGTGAAGCA 89707 29 100.0 32 ............................. CAAACGATGAGCGGGCCAACGAATCGCCGTTG 89768 29 100.0 32 ............................. ATCCACGGTTCGACGCCGATCGCCGTGGCTAT 89829 29 100.0 32 ............................. CCGCCGTCGAGTGTAATACCCTGATCCATCGC 89890 29 100.0 32 ............................. AGATCGGCGGCCAGTGGATAACCGTTATCCCC 89951 29 100.0 32 ............................. GTGTGGTAATTGGTGGTCTGGCTGGTGGTTTA 90012 29 100.0 32 ............................. AGAATCTGGACACTGCATATACCGCAATCCGT 90073 29 100.0 32 ............................. CCAGCCGTTCAGTATTGCCGGTGTCAGCAAAA 90134 29 100.0 32 ............................. GAAAAGCTACTTTTGTGTTCAACTGATGCATT 90195 29 100.0 31 ............................. CCGCGCAAATCCAGCGAGCCGCCGACGCTCA 90255 29 100.0 32 ............................. ATTGTTATAATTATTTATTGAAATATCATTCC 90316 29 100.0 32 ............................. AATCTATTGTGAATTTGAAATGGTCCAGCACT 90377 29 100.0 32 ............................. GGTAAAAACACGGTCTGAACCGACATTCATGT 90438 29 93.1 0 ...........AT................ | ========== ====== ====== ====== ============================= ================================ ================== 14 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCTGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGTTAGGCGATAGCGGTCATCGAGGACGCGGCGGATGAGTATGATCGTAGTTGTAACGGAAAATGTTCCTCCACGTTTACGTGGACGGCTCGCTATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTCGGAGATACATCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTAGTGATGGCTTGGGCGACCAATACCGAGTCAGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGTTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //