Array 1 221-488 **** Predicted by CRISPRDetect 2.4 *** >NZ_VSHW01000041.1 Vibrio cholerae strain N2793 NODE_328, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 221 28 100.0 32 ............................ TCATAGTAACAGGGAAGTCCACACTTAGTGTT 281 28 100.0 32 ............................ AATTTTGGCGCGTTGGCGCGTTCAGGCCGCCA 341 28 100.0 32 ............................ TTTTTTACTTCTCACTTTGCGTTTGTGACTGA 401 28 100.0 32 ............................ GTCACGTTCATTTCTTCAATGCAACGGGTGGT 461 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 5 28 100.0 32 GTTCACTGCCGCACAGGTAGCTTAGAAA # Left flank : GAATTAGCTTAAGTGTTTACGGCACAATGGTTTAGGTTAGGTGGTGGCGTTGTTCACCCCTTAACGCGGCGTTAACTGGCAATGAAATTACTCATCTTTTTTCGTTGAGTTTTAAGTTATTGATTTATATTGATAATAAAACCAGTGAAAATAAAAGGTTATTTTGGGAAATTTGATGTAATTACTATTATTAACAATAGGTTACTGCTAAAGTTTCATAG # Right flank : ATTCCGCCCATTCTGCTACGTTGTATATCGTCAGTTCACTGCCGCACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCTTCTTAAAGGCTAAAATCATCAAAATCCCAACTTCTTGTTCTTAAAAATCAGCTTTTAGTGTTCAAATTGCACAATTTGGCATTTGAATTTTGCTAGATACTGATTTGGTAGAAAGTGTTGGAAGTTCCGCAGTTTCAAAGCCGCTGAAAGCCAACAAGTCTCGATGCTTCAAAGTCGTTGGATGTTCAATTCGGTCAACTTGGTTTCACAAAAAGCAGCATCGTCGCTGAAATCGTGCTTCTTTGTCGGAAATGCGGTAAGTGGCCAACTTAACCTTGAACGCTGCAAGTTTTGGCAGCTCACTTCACAGCTTTTGGCGTTGGACGTGT # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGTAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGTAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.00,-1.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [76.7-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 3245-3512 **** Predicted by CRISPRDetect 2.4 *** >NZ_VSHW01000025.1 Vibrio cholerae strain N2793 NODE_73, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 3245 28 100.0 32 ............................ TCATAGTAACAGGGAAGTCCACACTTAGTGTT 3305 28 100.0 32 ............................ AATTTTGGCGCGTTGGCGCGTTCAGGCCGCCA 3365 28 100.0 32 ............................ TTTTTTACTTCTCACTTTGCGTTTGTGACTGA 3425 28 100.0 32 ............................ TTCCGCCCATTCTGCTACGTTGTATATCGTCA 3485 28 92.9 0 .................C......A... | ========== ====== ====== ====== ============================ ================================ ================== 5 28 98.6 32 GTTCACTGCCGCACAGGTAGCTTAGAAA # Left flank : GGTAACTTCAAACTAGAAAGCAATCTGTCAGTAGATCTAGTTGGTGCCGAAGCATACGCAAATGCATATGCTCTTGAGTATTTGCACAAAACTAATGTGCCTATCGCAAGAAACACTCTTGCTCAAGCAATTTATCGAGCGTCCTCTTCAACTAAAACATTCGAGAAAGAACTTTATTCCCGTATTTGTAAGCAAATTGGGAAAGGACGCCTCAAACGTTGGGCTGCTGCTTAACAAACGCCTCAAGAGGGACTGTCAACGCGCGGCGTTCCCAGTCCCAATAAGCTGCGGTGGTTACGGTTGTTGTTTTTGAGTTTAGTGGTAATGCGTTGTCAGCCCCTTAGGCGGGCGTTAACTGGCAATGAAATTACTCATCTTTTTTCGTTGAGTTTTAAGTTATTGATTTATATTGATAATAAAACCAGTGAAAATAAAAGGTTATTTTGGGAAATTTGATGTAATTACTATTATTAACAATAGGTTACTGCTAAAGTTTCATA # Right flank : TATTTATAACTTTGGCATTTGGGATCGGCCAGTTAACAAACGCCTCAAAGGGACTGCCAACGCGTGGCGTTTCCAGTCCCAATGAGCCGCGGTGGTTTCGGTTGTTGTGTTTGAGTTTAGTGTTAATGCGTTGTCAGCCCCTTAGGCGGGCGTTAT # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGTAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.33%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGTAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.60,-2.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //