Array 1 3448-3133 **** Predicted by CRISPRDetect 2.4 *** >NZ_BJNV01000142.1 Zoogloea ramigera strain NBRC 15342 sequence142, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =================================== ================== 3447 36 100.0 35 .................................... CCGTTTCCGCACCAGCTTGCAAGTTCCATATCGCC 3376 36 100.0 33 .................................... GCTCAGGGCAAGATCTAGTAGAAATAGTAGTAG 3307 36 100.0 34 .................................... CTGCGCCGCCAGGGCGTCCCGTTCATCGGCCAGG 3237 34 91.7 34 ....................--........C..... CTAAAACGGAGTGCGTGCAAGGCGTCGATGTTCT 3169 36 80.6 0 .....C...C........CCC..........GC... | C [3136] ========== ====== ====== ====== ==================================== =================================== ================== 5 36 94.5 34 GAGAAACCCAAGCCCTGAAATCAAAGGGATTAAGAC # Left flank : GG # Right flank : CGGCCGCGCTTGCCCGTGGGGCCGGTCGGCCTGCGTGGGATGCCCCGGGTTCATGCCGTAGGCAAAAAATAATGCTTTTCGTATGAAGCGGCCGTGGGTACCATGCCATGGCGCCGGCAGGGCTCCGGATCGGGGGCCGGCTCGCTGTGCGCATTCCATCCACGCATCCTCGAGAGCCTGCCCATGACCCAAAACGTGATTTCCATCGACATCCCGGCCGAACTGCTCGCCAAGCTGGACGCCGCGCTCGACGCCATCGAGGCGGTCACCGACATCTTCGAGCCCATCAGCGAGGAGCAGATGCGCGCCCTCGCCAAGATGGGCGACCGGCTGGAGCCCTTCTGCCGGCTGGCGGCGGCGGTGTTGCCCCAGTACCCCCAGGCGCTGCCGCCGTCGTTCAGCGTTGCCGAGTTGCAGCGTGACCTGGCGGCCTTCGATGCGCTGCGGCCGCGGGTGCACCGCCTCGCCAAGGCCCTCGAGAAGAGCCAGGACACCCTGAC # Questionable array : NO Score: 2.78 # Score Detail : 1:0, 2:0, 3:0, 4:0.72, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGAAACCCAAGCCCTGAAATCAAAGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.40,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [23.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 14-3235 **** Predicted by CRISPRDetect 2.4 *** >NZ_BJNV01000102.1 Zoogloea ramigera strain NBRC 15342 sequence102, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 14 37 100.0 34 ..................................... TCACGAGGGGCCACATATAGGCGGAATGCGCAGT 85 37 100.0 33 ..................................... ATGATCAGCGTGTTCAGCCGCATCTCGAGCGTG 155 37 100.0 36 ..................................... GAAGCAGCACGGCGCGTCATGTCCGCCACGATGCCC 228 37 100.0 37 ..................................... TCCAACCTGCTCGCCGAAGCCGGCAAGGCCACCGCCA 302 37 100.0 36 ..................................... AAGGTACTGCTTCGGCAGGCGCGCACCGCTCGCCAA 375 37 100.0 35 ..................................... AGTCCCCTCTCCGAAGTACTTCGCGCCTGCATCGC 447 37 100.0 35 ..................................... TTGAGGATGGTGTCGGACTGCACCTCGGTGAGGGC 519 37 100.0 36 ..................................... CAGTGATACAGCGCGGTGATGAACGGCTTTGTAACG 592 37 100.0 37 ..................................... ACCCACGGTGAGCTTCGGCCGCTTGCTGGGCTGGGGC 666 37 100.0 36 ..................................... TGATTCTTGGTTCATAGGCGACAGACGTAAAAAAAG 739 37 100.0 39 ..................................... CGCCGATGATCAGCGTGGTGACCGCCACGAAGATCCACG 815 37 100.0 34 ..................................... TCGAATCCCTGACGTTGATCTTTCCCCCGCTGTC 886 37 100.0 36 ..................................... TCAATCTACTACCTTCCCTGCCGACTGGTGGGCAGG 959 37 100.0 34 ..................................... TGCTGAGGCCATTGTTGGTAAGCTTTCAAAGCCT 1030 37 100.0 37 ..................................... TGAGCACACGCACACCATGGACCGCCCCGACCTCATC 1104 37 100.0 37 ..................................... CTCGGCACCTTCCCCGACCCCTACCTGCCCGACGGAG 1178 37 100.0 35 ..................................... CGCATCCTCCCCGTGGGCTGCAAAGTCGCCATCCT 1250 37 100.0 36 ..................................... CCCTTCGAGAACTACACCCGCACCGCCCAGGTGCTG 1323 37 100.0 35 ..................................... AGTGGTATCTGTCCGACTATGTCGCTCTGGCGGAT 1395 37 100.0 36 ..................................... GAGCATTTACAGGGCTCCGATCTTGGCGAGCAGCAC 1468 37 100.0 34 ..................................... GCCGATTGCCAGAGCATCGGCCCGGCCACGAGCC 1539 37 100.0 36 ..................................... TGGGTCAGGTAATCCTCAATCTCGCGCGACGAGTAG 1612 37 100.0 34 ..................................... CGGCGTCAATTCCATATCGACCGCCGCTGCCATG 1683 37 100.0 35 ..................................... ATCGATGCCGTCGTCGCCCACCGCGGCCTCTCGGA 1755 37 100.0 34 ..................................... GTCAGTGCGCAGGAGGTCATCCGGTAGCGTGATC 1826 37 100.0 37 ..................................... GATCAGCGTGCTGTGGGTGCGGTGCAGCCGGATCAGG 1900 37 100.0 37 ..................................... AGGGTGTCGCGCTCGGCGGTGAGGGCCGCGACGCTGG 1974 37 100.0 34 ..................................... GCCCTGGAGAGTCTGCAAGGCGGCGGCTTGCTCG 2045 37 100.0 38 ..................................... CTATGTCCTTTTTTGGTCAGCAGCAAACGACGGGCAGA 2120 37 100.0 34 ..................................... GCAACGCGGTCAGTCAGTTCTCGCCGCAGTGGGT 2191 37 100.0 34 ..................................... AGCGGCTTGGCCAACCTGGGCAACGGCCTGGCCG 2262 37 100.0 36 ..................................... CACTTCCACCAGGCGGCGATGCACGGCGGCGATGTC 2335 37 100.0 35 ..................................... TTGCTCATTCCTGCACCTCCAACTTGAAAAGCACC 2407 37 100.0 34 ..................................... CGAACGATCTGGCAGCCCCGCCCACGGTTAATCT 2478 37 100.0 38 ..................................... ATGCCCGTTCATCGGACATGAGCGAATAGTTGTACAAA 2553 37 100.0 36 ..................................... CCGATGATGCTAAAGTGGTGGCGAAGGCGCTGGGGG 2626 37 100.0 35 ..................................... GGTTATTGCCTTCGCGAAAAACAAACCCGCGCTCG 2698 37 100.0 34 ..................................... ACCGTCACCGCCTTCGACGAAGCCCTGCGCCTGC 2769 37 100.0 34 ..................................... ACCGACGGCGAGGTCGAGCGCCTGCTCACCGAGC 2840 37 100.0 35 ..................................... CCGACCAATCCAGCGCCAGGGAGCCCGACGACGCC 2912 37 100.0 35 ..................................... CGGTTCGATGACGTGGAACAGCCATAAACCCTTGC 2984 37 100.0 34 ..................................... GCTGAATACGGGGGCGCAGTCTATGCGTAGCAAG 3055 37 100.0 35 ..................................... AGCGTGACAGCAGATGCCACGTCGCCAGACTCACC 3127 37 100.0 35 ..................................... GTCGCGCTGGCGATGGGCTTTGCCTGTGCATCGTG 3199 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================= ================== 45 37 100.0 35 GATTCGCCCGTCAGCAATGACGGGCGTGGATTGAAAC # Left flank : GGCGACGGAGGGGG # Right flank : CCTGTACACCGAGCTGATCAAGCGCGCGGGCCTGGCCGATTCGCCCGTCAGCAATGACGGGAACGAACCACAAAAACGTCCGGTTCACCGGCTGAGACACCACTGAAACTGGCTCCCATATATCGACCAAAGGTGGATCTGTTGCGGTGGTCAATCGTTTAGAAAGCATTCAAGACGACTTGAGGGATGCAGCGGAAGAAGTTGCCACTGACCGCGACAACGTGGAAGCCGTCCCCGGCTACTTCGTCTTGCTGGCCTTGGCGGGAGCGGGATTGCGCAGCGCGTCGAGTTGTTGCCTGGCGTGTTGCTCCGAGCCGAACACCAGAATGACCAGGGCGCGGATCGATGCCGGGATGTTGCGCCCCGACTCATAACGACTGCCGCCCGACTGGGTGGCCTGGAGCCCTTTCCAGAACGTGGTCTGGTTGATCCTCAAGGCCCTGCGCAAGGCCTTGAGATCGGGGCCCGAGCGGGCATCCTTGTACATCCTGGCCTTGACC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATTCGCCCGTCAGCAATGACGGGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GCATCGCCCGTCAGTAATGGCGGGCGTGGATTGAAAC with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-16.10,-14.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [3.3-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.74,0.27 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 5794-5399 **** Predicted by CRISPRDetect 2.4 *** >NZ_BJNV01000102.1 Zoogloea ramigera strain NBRC 15342 sequence102, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 5793 29 100.0 32 ............................. TCGCGGCGGTGTGTCGGGTGTCGTGGAACGTG 5732 29 100.0 32 ............................. ACGGGCAACAAGCTAGCCGTTGTTGGCTGCGC 5671 29 100.0 32 ............................. TCGACCCCGCCCAAGTCGATCCCGCCCAAGTC 5610 29 100.0 32 ............................. CGTAAGCGCCGGGGTGAGCGAATCGACCTTGA 5549 29 100.0 32 ............................. TATTCCGGGGATATTTTCGCCGGTGCCAGAAT 5488 29 100.0 32 ............................. GTCGAGATCCTGCGCGGCGCGGTCGAGAGCGC 5427 29 93.1 0 .............T..............T | ========== ====== ====== ====== ============================= ================================ ================== 7 29 99.0 32 GTGTTCCCCGCGCCCGCGGGGATGAACCG # Left flank : TCTGGAACGCATCATCCCCGATATCGAGGAAATACTCGCCGCCGGTGAGATCCCCCGTCCCGAGGCGCCGGAAGACGCCGTCGGCCCGGCCATTCCTAATCCGGAGAGCTTAGGCGATGCTGGTCATCGTGCTTGAAAACGCTCCGCCGCGGCTGCGTGGCCGGCTGGCGGTGTGGCTGCTGGAGGTGCGCGCCGGGGTTTACGTGGGCACTTATTCACGCAAGGTCCGTGAGCACATCTGGACCCAGGTGGAGGCCGGTATCGAGGACGGCAACGCGGTGATGATGTGGTACGCCAACAACGAAGCCGGCTTCGAGTTCCAGACTCTCGGCGCTAACCGTCGGCTGCCCGCAGACTGGGACGGCGTCCGGCTGGTCAGCTTCCACCCCGAACGGATGTCGGACGATCTTTAACAATTTGGCATGATTGAAAGAGGCAAAAAATCTGGTGGCTCGGAGTGGTGCTGGATTCTCGCGTAGAATCAATGTGTTGAAAGAAGT # Right flank : GCCTTCGTCTTTGACTTGGATATCGATCATCGCTATTCTCGAATCAGAAGAAGACCGGTGTTCGCCGATTGGTAAAGGCTAGGCTTCGGCTGGTGGATGCGGGTTCGATTCCCGTCACCGGGCTTCTTCACCCATTTTGATGAAGCGGCCTGTGTCCTGCAGCCGCCCAGCCCCTTCCTTGGTTCCCGGCAGCCGGTAGGCATTCACTACCGTGTCGATGCGGCCGGCCTTCTTGGCGACGTGGGCCGGCTCCATCGCCACATACACCACGCCGTCCTCGAGCTCGCGCACAAAGGCGAAGGTCTCGTGCTTGGGGTCGAAGTACACCGCGTCCGGTCGGGCGATGATGCCCGGCGTGTTCCCCGCGCTCGCGGGGATGAACCGGATTTCGGAACTTCTACGAGATTGGGACGCACGTGTTCCCCGCGCCCGCGGGGATGAACCGCCACGCGCCTGAAGGATGCGAAGCACCGGCTTGTGACCGGCACATTGGAGCCACC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCCGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCCGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1955-37 **** Predicted by CRISPRDetect 2.4 *** >NZ_BJNV01000152.1 Zoogloea ramigera strain NBRC 15342 sequence152, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 1954 37 100.0 34 ..................................... CTACGCATACCAACTCGGGGCATCAAAAGGCGCC 1883 37 100.0 35 ..................................... GTAACACACCTATCGGCTCAACGGTAAAGGTTCCC 1811 37 100.0 34 ..................................... ATCAAGGCTTTTTTGATTGACCACTGGAATAGTA 1740 37 100.0 38 ..................................... AGCCATCCGAAATCGATTGGGTATGCTGTAACGAACGG 1665 37 100.0 36 ..................................... ATGGTAAAGGTGGTGGATTTGCTGAGGATCAACGAT 1592 37 100.0 34 ..................................... ACGCGCCTTGCCTGCCGCATCTGCCAAGCAATGC 1521 37 100.0 35 ..................................... CACAGAGACCTGAAGAAAGCCTCTGACGCCAAGAG 1449 37 100.0 37 ..................................... ATTGATCCCGTTGAAGATCAGCTCATACTCGGTGCCG 1375 37 100.0 34 ..................................... ATCCCGAAGTCACCGGAAGCCAATTCCACGGGCC 1304 37 100.0 36 ..................................... GGGAGTAGCGAACATGGATCAAATCAAGGTCAAAGA 1231 37 100.0 36 ..................................... ATTTGGCCGATCTTCTTGATTCTGCCAATACCAAAA 1158 37 100.0 37 ..................................... TGCATCTGCATTTGTTGCATTTGCTGCTGCTTCTGGA 1084 37 100.0 34 ..................................... GCCTGTCACTGAAAAAAAGATTGGCGATCAATTC 1013 37 100.0 35 ..................................... CAATCGACATCATCGAGGTTTAAACCATGCCAGAA 941 37 100.0 36 ..................................... AGATAATGGGTTTTCACTGGCAAACGCTGGGTTACG 868 37 100.0 36 ..................................... AACCGCCTTTTCTGCAACCGCTTCGCCGGCCTTCTG 795 37 100.0 37 ..................................... CCGTTTTCCCCAAAACAAAGCCCCATAGGGATCACCC 721 37 100.0 34 ..................................... AATCCATCGACGCGGCAACAACGTGTCCAGCTCT 650 37 100.0 35 ..................................... CTCAGAATCGTCGAAAGCCCTTCCTTGAATTGCTC 578 37 100.0 35 ..................................... CTCCGAAAGCTGCGATGGCTGTCCGTATCGGCGCG 506 37 100.0 35 ..................................... AGCGTTTCCTTGTCCGGCGTCTGCCCGTTGTTCTG 434 37 100.0 35 ..................................... AGATGCCCGAGCAGCCGCTGCCCTACGGCATCTAG 362 37 100.0 35 ..................................... ATACTTTGGTCTTTTAGCCATTTTGTTTGCCTCGG 290 37 100.0 36 ..................................... ATCACCATGGCCACCTTGGATTCGACCGAGTAGTTG 217 37 100.0 34 ..................................... AATCCACCAAACGATCTGCTCTTTCAGATCAGCG 146 37 100.0 36 ..................................... TCATTGAACTTGCCCAGATCCAGCTTGAACCAGTAG 73 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 27 37 100.0 35 GATTCGCCCGTCAGCAATGACGGGCGTGGATTGAAAC # Left flank : GCAGCAATGACGGGCGTGGATTGAAACGGCCAGTCTCCGGTTTTTGCGCACCGCTGAAAC # Right flank : CCTGAATCTTGCGCTCGATGGTCTGGGCGACGGAGGC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATTCGCCCGTCAGCAATGACGGGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,9] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GCATCGCCCGTCAGTAATGGCGGGCGTGGATTGAAAC with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-14.90,-16.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [21.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.01 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 530-1675 **** Predicted by CRISPRDetect 2.4 *** >NZ_BJNV01000157.1 Zoogloea ramigera strain NBRC 15342 sequence157, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ==================================== ================== 530 36 100.0 34 .................................... TTATCCCGCGTGGAGAGATTGGTGATGAGTTGGT 600 36 100.0 32 .................................... CTTGCAGCTGACGGTTGGCTTCAGAATTGGCA 668 36 100.0 36 .................................... GGCGGCGGCAGGGCGATCTGCTCCATGTAAGTGCGC 740 36 100.0 33 .................................... GTCACCGCCGTTGCGGTAGCCGACCGTATCTGC 809 36 100.0 33 .................................... AAGGCTACTGGAGCGTAGTTGTTACAATCCACA 878 36 100.0 33 .................................... TGCAGTGTCCTAGAACCTTTGCAAAATCAATCG 947 36 100.0 34 .................................... TAATCGTCGGGCGACAGGTGCGCGAGCGCCTCTT 1017 36 100.0 33 .................................... ATTCGGAGAGTCCGGGTCTTCCTGAAAGTTAGA 1086 36 100.0 35 .................................... ATCAACTCGGAGCACCACCATGCTTCGTCGTCTTG 1157 36 100.0 34 .................................... AGGTTGTCCCAGACGTCTTCCATAGTGGAGAGAA 1227 36 100.0 33 .................................... GGATCAACCCGGAGCGCCTGCTTCTGCGCGTCG 1296 36 100.0 33 .................................... ACCGCCCGCAGCTGCGCCTTCGTCATCCCCGCC 1365 36 100.0 33 .................................... CGAGTGCGGATAGCTCTTTGCGTTGACAACGTA 1434 36 100.0 33 .................................... AGCTCTGCTGCTTGCATGTCTGCGAAATTCTTG 1503 36 97.2 30 ....G............................... AACACTGATTGCTGTATGGCTCATATGTTA 1569 36 100.0 35 .................................... CATGTCACAGAGGTAAGGGTGCTTGTGTAGATGTG 1640 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ==================================== ================== 17 36 99.8 33 GAGAAACCCAAGCCCTGAAATCAAAGGGATTAAGAC # Left flank : GCCCGCCAGGCCGAGCGCGAAGCCGCCGCCGCCGCCGAGCAGCAGCGCCTCGCCGACGAGGCCGAGCGCGCCCGCCGCCTCGCCAGCCTCAGCGAAGCCCTGCAGGAGGTCGAAAGCTTCGCCGACGCCTGCCGCCAGCGCGAGGCCCAGCTGCGCGGCAAGAAGGACAAGCCCAACACCGCCCACCACACCCGCGCCTCCCAGCTCGCCACCCGCGCCCAGGCCTGGGCCGCCGACGAAAAGGCCGCTGCCGCTGCCGCCATCCAGCACTGGATACCCCTCATCGTCGACATCGAGCCCAAGGACCTGCGCAAGAAGCTCAAGCTCGCCGCGCTGGAGCCCGGCGCATGAGCCCGCAAGCCGCCGGCGGCCCCCTCCCGCTGCCGGCCCTCTCCAGCACCTGTCGGCCTCGCGTGGCCGACACATCCCCGCCGGTGCTCCGCAATCCTGCGGACACCTCCGCCAACACCTTGAAAAATAGAAGTAAAATCGCCCACACA # Right flank : GTGAAGAGGGCGGCGCGGGCGAGCATCAGAAGGGGGAGAAACCC # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGAAACCCAAGCCCTGAAATCAAAGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.00,-4.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA // Array 1 22152-20741 **** Predicted by CRISPRDetect 2.4 *** >NZ_BJNV01000039.1 Zoogloea ramigera strain NBRC 15342 sequence039, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 22151 37 97.3 34 ..........................T.......... GGGTGCTGGATTCGGCCATCGTCGCCGGCACCAT 22080 37 100.0 37 ..................................... GCCGGTCAGTCAGGCTTTTGAGCTGGTCAGGGGTCAG 22006 37 97.3 36 ..............T...................... ATCGTCATGCTCGACGGGATCACGAAAATTTTGCCG 21933 37 100.0 36 ..................................... ACCCCCGGCACGATCATCGACGACCTGCGCCCAGGC 21860 37 100.0 36 ..................................... GCAGTGGAGACGTCTGCACGGCGGCGCGGATCGCTT 21787 37 100.0 34 ..................................... TTTCCAGCTCTCTAAATCGCCCCTTGCGGAGTGA 21716 37 100.0 37 ..................................... TTTCGTCTGCCTTTTTCAGTCTTCCGTATTTGCTGGT 21642 37 100.0 36 ..................................... GAGCGCCGGGATCGAGGCGACCGCCCACTTGACCAT 21569 37 100.0 35 ..................................... GAAATCAGGATTTCCGCAACTTCGGCGCTTGGCTT 21497 37 100.0 35 ..................................... GGCGGCGGCTGGCCCCAGGGGGGCGTGCTGCGCAT 21425 37 100.0 35 ..................................... CGGGACACCAGATCGGCAACGGTCTTGTAGGTCGA 21353 37 100.0 35 ..................................... TCGCAGCCCGTTGATCGGGCGAGCCTGGAGCAGGT 21281 37 100.0 36 ..................................... AGCCGCCTTGATGCGCGGATTAAGCTGCTTCAAGTA 21208 37 100.0 34 ..................................... GAAGCCCACAACAAGATCATGGGAGCCAAGCAAT 21137 37 100.0 35 ..................................... AGACGCTGGCCGATGCGTAGCGCTTGAAGATGCGG 21065 37 100.0 34 ..................................... GGTGGGCCGGGTGTACGTGCCCCTCACCGCCGAT 20994 37 100.0 36 ..................................... CAGATGCCGAATCCAGTCCGCATCCGCCGGCGCGTT 20921 37 100.0 35 ..................................... AATATCGTCGCGATGAAAAGCATTACGGCAGCGTT 20849 37 100.0 35 ..................................... GTCGCCTCTTCCACGAACTCACGCAGCGGCCGCAG 20777 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 20 37 99.7 35 CCTTCAACGAAGTCCGACCATCAGGTCGGATAGCCAC # Left flank : GGCCTACGCCCACATCGGAAGCCACCCGGCGCTGGGCTCCCCGCCTTACGCGCACGAGCTCGACCTGCCGGGCTTGCGCATCTGGCCGCTGAGCCCTTACCCGTATCTGGTGTTCTACGTCGAGCGCCCGGGTCATGTCGACGTCTGGCGTGTGCTGCACGGCCAGCGCGACATCCCGGCCTGGATGCAGGACCCCGACGTGAGCGATTGAGGCGGGTTGCCCGGGTGACGGGGACGCCGGCCTTGGTGTGGCGCGCAGATGCTCTGGTTGTGAGGGCATGAGCTTCGGTGACGCGTGCGCATCCTTCGGGGGCGGCGGCACATGCCTTGGTGACGGGGGAACATCCTTTCGTGAAGCGCGCCGATGCTGTCGTGAAGCGTGCATTTTCTTCATGCACAGGAGTGTCAGTAATTTTGTGTTCAAGGCGGTTTTGATTCTTCCCGCCCTGAAGGTCGGATAGCCACGACGCCCACGACGGCTACTTGCATATCCAGAAGCA # Right flank : CCCACATCGGCAAGCCTCTGATGCACAGCGGAAAAACTGGTCGTTTGCGCGAACCCCCAACATCCAGGGGCTGGCTTGCGACCGGGTGGAGTCTGGGTTGGGCAATTCATTGATCTGATTCGACTTTACCGGTGCGCTAACCTGCCGGGGTTCAGGTGGGTGCTCAGGGTTCGCGCGGCGGGCAGGAAGAATCCGAATTTCCCGATATTGGTTCGCTGGGATGCCCACAGGCCGGCGACGCCGGGCAACTGTAGCAGGGACGCCACCGGGCGGCTACGCACCAAGCGCACTTCAGGGGCGCTGAGCGGGAGGCTCCATTCTGGCCAGGCGTAGGCCTGCCGGTTCGGCCAGCCGGTGGTTTGGGCGCGGCCGTTGCCATCGGGCAGCACGGGGTGCCAAGGCAGTGACTCGACGGCTAGCCAGACAAGGCCGGGTTGTGCCAGAGGCTTGGTATAGGTTGGGGCGATGGCGGCTTGCCCGTGGGCCGTGAGGGTGGCCGG # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCTTCAACGAAGTCCGACCATCAGGTCGGATAGCCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.60,-13.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.74 Confidence: LOW] # Array family : NA // Array 1 20-4911 **** Predicted by CRISPRDetect 2.4 *** >NZ_BJNV01000051.1 Zoogloea ramigera strain NBRC 15342 sequence051, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 20 28 100.0 32 ............................ GGGCCGTCGGGCACGCCCGGCGCGGAGAAGCT 80 28 100.0 32 ............................ AGCGTGGCCACCGCCACGCGGGATTTCACGAT 140 28 100.0 32 ............................ CTTGAGGGACTGCAGACGGTTGGCCAGACGTT 200 28 100.0 32 ............................ AGCGCCGTTGCCGTGCAGCGCAGCAGCAGCCA 260 28 100.0 32 ............................ GCGAGCGTGCAGACGTACCTTCGCGACTCAAT 320 28 100.0 32 ............................ GGCCAGTTGCCAAACTCTGCGTAGCACGCTCC 380 28 100.0 33 ............................ GTTGCGCAGGGCGCCGGCCACGTCGATCAGCGT 441 28 100.0 32 ............................ ATCACCCCGCCGCGCCGAATCTTCTGCATGAC 501 28 100.0 33 ............................ GTTTCGCCACAGGGCGGCAATGATCGCCGCCAG 562 28 100.0 32 ............................ CAGCACCGCCCCCGATGGCAGCCGCTGGGCGC 622 28 100.0 32 ............................ GATCGCCTTGTAGAGCGCGGCCGGGTTCTTGG 682 28 100.0 32 ............................ AGGGTGGCGATCAAGGGAAGCAGATAACGCAT 742 28 100.0 33 ............................ AGTGGGAGTACGCGACGTTGGGGGCTGCGGTGA 803 28 100.0 32 ............................ ACCTGAAAGCCTCGTCATGCCCACCAAGCACC 863 28 100.0 32 ............................ AGACCGGATGTCCGTGTCACAAACGACGGCGT 923 28 100.0 32 ............................ TACGCGCTTATCGAGCCACAGCCCGACGGGCG 983 28 100.0 32 ............................ GCAAGGGGCCGCTCTTGCGAGGGCTGGCGGCC 1043 28 100.0 32 ............................ TACTGCGCCGTGTGGCCGGCACTCGAGACCTG 1103 28 100.0 32 ............................ TGTCCGCGTACTCCGGGCAGCAGGGCAGTGGC 1163 28 100.0 32 ............................ TCAAGCCCCTGCATGGCCAGTTCGACCAGATC 1223 28 100.0 32 ............................ TGCATCACGGACATCCCCTTATAAAGAAGGGA 1283 28 100.0 32 ............................ TCTCGAAAGCCACTACCGGCCGCCCTTGCCTC 1343 28 100.0 32 ............................ ACGTGGAGGTCGACGGCAGTCAGGCCGGCCTC 1403 28 100.0 32 ............................ ACTCGGGCCTGCCTCGGCCGCGAGACCATTGT 1463 28 100.0 32 ............................ GGGCGGAGGCGACGATCTTACGCATCGGGGGC 1523 28 100.0 32 ............................ ACCGCCGCGTTCCGCACGCCCACCGCGCCGCT 1583 28 100.0 32 ............................ TATAATGAACACATCAACACACAACGCAGACC 1643 28 100.0 32 ............................ TTGTCCGTCAGCCGCTCGCGCTGGTGCATGTC 1703 28 100.0 32 ............................ GGCGCCGGTGCGATTCGCGGGGCCGATACCGC 1763 28 100.0 32 ............................ ATGGTCCCCCCATGCACAGAGTTGGCGTGGTT 1823 28 100.0 32 ............................ AGCGTGGCCATCGTCTTGTTGATGCTGACGGC 1883 28 100.0 32 ............................ GAGGTGTCCGACGTGTCGCCGACGACAAGGAA 1943 28 100.0 32 ............................ GTGACATTCGACAACGTGGCGGGCTACGCGCA 2003 28 100.0 32 ............................ TAGCCTGGCAGGTGGCAGGCCGGGTCAGCGCC 2063 28 100.0 32 ............................ GGCATCGTGTCGGGCGCCATGGCCACGCTCAC 2123 28 100.0 32 ............................ CGTATGGGCGGCTGGTCAGCGCGTACTCAGGC 2183 28 100.0 32 ............................ TGGTCAATCGCGCCACCGCGCCGGAGATCTAC 2243 28 100.0 32 ............................ CACACGACGGCGCCCAGGTTGGCGTCATAGAG 2303 28 100.0 32 ............................ GGCTGCGTAGCGGACATTGGTAAGCGCCGGGC 2363 28 100.0 32 ............................ ACTGGCGCCGGCGCCGACGTGGGGCCTCTGGA 2423 28 100.0 32 ............................ GGCCACGCTCTCAAACACCGCCCTGCCCTTTT 2483 28 100.0 33 ............................ GAGCAGATCGACCTGACGTCGTTCGGCATCCCC 2544 28 100.0 32 ............................ TCCTGAAACAGCGTCGGATGCTTCAAAAACTC 2604 28 100.0 32 ............................ ACGACCCGCGGCCACTTTGCCGGCAGCCTCGG 2664 28 100.0 32 ............................ TGGCCGTCGGAAGGCAGGCGGACCGCGTTGAG 2724 28 100.0 32 ............................ AGCTTCCAGGCGTCGACGTCGTGCGGCCGGCC 2784 28 100.0 32 ............................ ATGGTCTTCGGCATGATCTGCCGCGCCTCAAG 2844 28 100.0 32 ............................ ACAAAGCCCGCCGCGTTGCGGCTCACGCACAC 2904 28 100.0 32 ............................ AATCCGCAGCAGCGATGACGACCGCACGATCA 2964 28 100.0 32 ............................ GCCGACATCGCCGTGTGCAAGGCCCTCGGCCT 3024 28 100.0 32 ............................ TGCGTAATGTGTGAGGGCGAAGAAGGGTTCTA 3084 28 100.0 32 ............................ GCTCGGAGACGTTGGCGACGATCACCAGCTTG 3144 28 100.0 32 ............................ CTCACGGTGTCGTGGAACGATGGCGCCGCGGT 3204 28 100.0 33 ............................ ACCAGCCAATCCTGTTCGATGATGGCGGTGCGG 3265 28 100.0 32 ............................ CAGGTCGGTGAGGGTGGCCGGCATGTCACACC 3325 28 100.0 32 ............................ ACACGACGGGCAAGCGGGTTTTTCTTTGGTCA 3385 28 100.0 33 ............................ CTTCACCGGGCAGGGCGTGCTGCAGGCCTCGGC 3446 28 100.0 32 ............................ TGCTTGTGCAGGCGGGCGCCGACCCACTCACG 3506 28 100.0 32 ............................ CAGCTGCCCAGCGTCATTGACCTGCAGCGGCA 3566 28 100.0 33 ............................ GATAGATACCTGAGCGGTAATCCGATGGCTGCG 3627 28 100.0 32 ............................ ATGATGTCGCTACGGTTCATGCTGGTTCCTTG 3687 28 100.0 32 ............................ GAGCGAAGTATTTGCCCGCGTCAGTAACGTAC 3747 28 100.0 32 ............................ CAATACGGCCTGAGGGCTTGTTGCCCCATCCG 3807 28 100.0 32 ............................ AATCATGGCCAAAAATGGCCTGCGCGGCGTGG 3867 28 100.0 32 ............................ TCGGGCATTGGCTCGGTGATCGGCGGCACCAA 3927 28 100.0 32 ............................ AGCCAGGGAAATCAGCACGAGACGAGATAGTG 3987 28 100.0 32 ............................ GCAGCCCCGCCCTCAATCGCGCCATCGGCGGC 4047 28 100.0 32 ............................ TGGTCGTCGGTCAGCTCTCGCAGCAGGACCGG 4107 28 100.0 32 ............................ TCAGGGTGACCTGTTCGAGGCCCCTGTGCCAG 4167 28 100.0 32 ............................ AGAAAAACCTTTTTGAGTTCCTGGCCTGGGTG 4227 28 100.0 32 ............................ ACGGGCTCGGTGACAAATCCCTGGCTCAGCAT 4287 28 100.0 32 ............................ TGAGCTGTCGCTCGAGGAGCGGGAGCGCAACC 4347 28 100.0 32 ............................ AGGGGCGCGGGGGTTTGCGGGCGCCGGGCTCG 4407 28 100.0 32 ............................ GCCCGGGTTCTCGTAGTCGGCTTCGCTGATCT 4467 28 100.0 32 ............................ CCCGAAAATCTCCCTTACGAAGGAATGGAAAC 4527 28 100.0 32 ............................ AAGCAGATGATGCTTGATGAAGACGAGGCGAA 4587 25 89.3 32 ..................---....... GTGCACGCCGCCCGGTCGCACCTCGCCTTGCG 4644 28 100.0 32 ............................ CCGGTCCCACAGCGGTGCGGCAGCGGTGAAGG 4704 28 100.0 32 ............................ GCGGGCGGTGAGGTCGCGGAGCTTCTGGTTCA 4764 28 100.0 32 ............................ GAGGGTGCCGGTCTGGATGATGGCGAGCAGGC 4824 28 100.0 32 ............................ GCCATGACCGCCCCCCTCAGCAATGCCACCGT 4884 28 92.9 0 .........................C.G | ========== ====== ====== ====== ============================ ================================= ================== 82 28 99.8 32 CGTCACTGCCGGATAGGCAGCTCAGAAA # Left flank : TTAAGCGGCGCCGTTACATC # Right flank : GACATCACCAAACGCACGCCTTCCCGCTAAACTCCTGTCCTCTCCTCTCCCCCGGAGCCCCCCATGAACGCCCACTGGATCGACATTTCCACCGCCCGGGGTGAGACGTTTTCGGGTTATCTCTCGCTGCCCCCCACTGGCCGCGGGCCGGGGATCGTGTTGATCCAGGAGATCTGGGGCGTCAATGAACACATCCGGACGCTGGCCGACCAGTACGCGCTGGACGGCTACGTGGTGCTGGCGCCGGACCTGTTCTGGCGGCTGGAGCGGCGGGTTGACCTGGCCTACGACGAGGCAGGCAGCGCGCGGGCCCGTCAGCTGCTGCAGACGGTGGACGGCACGCAGGCGGCGGCCGACGTGGCAGCGGCGGTCGACGTGCTGCGCGCGCGGCCCGAGGTCACCGGCCGGGTGGCGACGCTGGGCTACTGTTTCGGCGGCCAGATGGCCTTCCGCGCCGCGGCACTGGCCCGGGCTGACGCGGCGGTGTGCTATTACGGCGG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CGTCACTGCCGGATAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGGATAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [15.0-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 13887-17241 **** Predicted by CRISPRDetect 2.4 *** >NZ_BJNV01000081.1 Zoogloea ramigera strain NBRC 15342 sequence081, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 13887 37 100.0 35 ..................................... TTTTGGAGTCTCCCATGCTCAAACGCGGTAGCTCC 13959 37 100.0 35 ..................................... AAATATTTAATCCGGGGGGGAGCGGCAAGAACGTC 14031 37 100.0 34 ..................................... CTGATCGCACAAGCAAGCCGCGCGAAAGCCGGCA 14102 37 100.0 35 ..................................... CTCACCATCGACTTCCTGGAGCTGACCGCACGCTC 14174 37 100.0 34 ..................................... TCGAGTCATGGCCTTCGGACGGCCGGAGCCGGAG 14245 37 100.0 34 ..................................... GATCCCCCGATGATCCCCTGCGCCTCGAAGGACG 14316 37 100.0 36 ..................................... AGGGTGCGGGCGAAGCCCGCGCCCCTTGGACTCGTG 14389 37 100.0 36 ..................................... ATCGTGACGCGGGGTGTGGAGGCGCGGGTGGAGTAC 14462 37 100.0 35 ..................................... ACCAAAGCGATGATTACCGGCTGGCAGATGAAGGC 14534 37 100.0 36 ..................................... TCGCGACGGGCACGCGTTACGACGCTGCCGGTAGCA 14607 37 100.0 37 ..................................... TTGAAATATAGCAATCTTTGAGCCGATTAAAAAAAAG 14681 37 100.0 36 ..................................... GCGTTCCTGCTCGGTCATGGTGCCACCCCCGCCGAA 14754 37 100.0 35 ..................................... ATCATCGTCAATCCCTGCCTTTCGTGGGTTGGTTT 14826 37 100.0 34 ..................................... ATGGCGGGGGCAGTTAGGCGGTGGGGGTGCTGCG 14897 37 100.0 37 ..................................... GGATTTCTGCGGTCGTCAGCTGGCCGTAGTTCGCTGC 14971 37 100.0 36 ..................................... GGACGTTGCAGCCGGAACGATTGTGCGCCATCGCGC 15044 37 100.0 34 ..................................... CGCCCGGGCGATGTGGTCGTGATTCATCACACGG 15115 37 100.0 35 ..................................... GCCCATGTCCCAGCGCATCAGCTGGACTGACCGAA 15187 37 100.0 35 ..................................... CGGGTTGAATATTTGCATGTGCCCGTAGTCACCTG 15259 37 100.0 34 ..................................... TACCTCAAGTGCTCAGACGGATAACCGGCGCGTA 15330 37 100.0 34 ..................................... ATTTCAGCCCCCCGGCGCGGATCATCATTGCATC 15401 37 100.0 35 ..................................... AAGCGCATCCGGGTTTACAGCGCTCAGATGAACGC 15473 37 100.0 35 ..................................... ATTGCCGACGATCTGCAGGGCTCACGCGTGCTCGA 15545 37 100.0 34 ..................................... TTCAATGTCCCGCTCTATTGCGGCGACCTGCTGG 15616 37 100.0 36 ..................................... CGCTCTACCGGGCCGGAGTGACGAAGGCCGACGTGG 15689 37 100.0 37 ..................................... GTTGCCGATCAGCGCCAGCGTCTTGCCCACCTCGGGC 15763 37 100.0 35 ..................................... TGTTCCCGTACTGCACTTCCTTCAGCATTTCGTAA 15835 37 100.0 34 ..................................... GTGGTCAAGCACACCACCGGCACCCCAACCTACG 15906 37 100.0 35 ..................................... AAGGCTTGTTACGATGAGGTTGAAGCGTCCACGCC 15978 37 100.0 35 ..................................... AGGTCTCTGTCTTCGCCCTTGTCGCCGCTCTCAAT 16050 37 100.0 34 ..................................... CACTAATGTGCCGGATGTTCTTGCGCACACCGTT 16121 37 100.0 34 ..................................... CGCATTGACCGTCCTGGGTATTCGGAAATACTGC 16192 37 100.0 35 ..................................... ACTGGCAAACGCTGGGTTACGAGTCGGCTGCGGAT 16264 37 100.0 35 ..................................... CAGGCGCTGCGCCCGCTGATCGCCCGTGTGACCCG 16336 37 100.0 36 ..................................... ATCCGCCTGCGCACCCAGTGGCGCACCGGCTTCAAC 16409 37 100.0 35 ..................................... GACGATGACGTCATCCCCCCCGGTGTCGAACGCAC 16481 37 100.0 36 ..................................... TGAGCTAGATCAAGGGTCAAAGATGGAAAAGGAAGA 16554 37 100.0 33 ..................................... ATCAGAGAACCACGGGTTATCCTGCCAATTGAC 16624 37 100.0 37 ..................................... ACCTGGAACAATCGGTAATGGTCGGAAGCGCGTGCGG 16698 37 100.0 36 ..................................... ATTACGTCGCAGTAGCCTGCGAACAGCTCCGCTACG 16771 37 100.0 35 ..................................... CATATATGAGTTGGCATTGATCGCTGGTATCCAAG 16843 37 100.0 34 ..................................... TTATTCGAGGCGGAGGGTAGCACCCTGTTTCATT 16914 37 100.0 36 ..................................... TGTATGGTTCAGGGCGACAAACATGAAACACGTCGA 16987 37 100.0 36 ..................................... ACCACCTTGGTGATGAATCGTGCGTGGTTGGCACGC 17060 37 100.0 35 ..................................... CGTCCATAAGCTGCTGTCCGACCAGATCAAGCGGC 17132 37 100.0 36 ..................................... ATCATGTCGCCGTCAGGGTTCGCCAAGATCCTGGAG 17205 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 47 37 100.0 35 GATTCGCCCGTCAGCAATGACGGGCGTGGATTGAAAC # Left flank : TTGTCATCCGCTGAAAGCCCCCATGCTGGTCATCGTCTGCTACGACGTTAATACCGAAACCAAAGCGGGCAGGCGACGCCTTCGCCGCGTCGCCAAAGTCTGCGAAAGCACCGGTCAACGAGTTCAAAAATCGGTCTTCGAATGCCAGGTCAACCTCATGCAGTTCGAAACGCTCGAACGCAGCCTGCTGGCCGAGATAGACCCCACCGAAGACAACCTGCGCCTGTACCGCCTACCCGATAGCCGCGGCTCAGAAGTCCGCGAACACGGGACTTTCCGCGCAACGGATTTCAACGGCCCCCTGGTGCTGTAATATTGCATTGCGCGAACCCCAAGTGACCACGTTTCCCCCGGAAGCTTCGCGCACGCGTCAAACCTTTGATTTATTTGTGAAAGCAAAAAAACCGTCCCCTTCTCCCCTGATCGCCGTCAGCGTTAACATGCAGGTTCGCGCAACGTGGACTTTTTTCGACGGCAAATCAGCTATTTGCATGTGAAGA # Right flank : ACACAGCGTCACCAGACAGGAAAGAGCGACGCGGACGATTCGCCCGTCAGCAATGA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATTCGCCCGTCAGCAATGACGGGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GCATCGCCCGTCAGTAATGGCGGGCGTGGATTGAAAC with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-16.10,-14.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [53.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.01,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 3980-49 **** Predicted by CRISPRDetect 2.4 *** >NZ_BJNV01000085.1 Zoogloea ramigera strain NBRC 15342 sequence085, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 3979 28 100.0 32 ............................ GTCGAGCTGATCGCCCGCGTGAATGGAATGCC 3919 28 100.0 32 ............................ GATGAGGGTGGCAGCTCTATCGGCGGAATGGT 3859 28 100.0 32 ............................ ATAGATGTAGCGGGCCGGCACTTCGGCCAGGT 3799 28 100.0 32 ............................ TCGAGGAGCTCGAGCTGCAATCCGGCCGCGAG 3739 28 100.0 32 ............................ CGCTGCGGCCTCGTTGCGCCTGTCCTACATGG 3679 28 100.0 32 ............................ TCGCCGAGGCCGGCCTGGTGGTGAAGAACGAC 3619 28 100.0 32 ............................ AGGCTCAGAAGCTGATGGGGCAGTACGGCGTC 3559 28 100.0 32 ............................ TTCTCGAGCGCACCCGCCAGGGCCGGCTGTTG 3499 28 100.0 32 ............................ AGCCAGCCACCTGCCACGGATACCGCGAGGAT 3439 28 100.0 32 ............................ TGAGCACGATGTTTCAAGACCCCGCGGGCACC 3379 28 100.0 32 ............................ AGGAAGCGGAGGATATGCAGCTTGCCGAAAAC 3319 28 100.0 32 ............................ AACGTCTCCGAGCGGATCAGCTGACATGAGCG 3259 28 100.0 32 ............................ TGGAAGAGAAGGCTAGGTGGGAATGGCTGGTC 3199 28 100.0 32 ............................ GAGGAGTTGAAGCGGAACATCGCGGTGTCCTT 3139 28 100.0 32 ............................ TCATGCGCAAACGAAAGGGAACTTGCGAGACT 3079 28 100.0 32 ............................ CTCGCCGAGATTCGAGTCAAAGAATTCGTTGA 3019 28 100.0 32 ............................ TGCGCGAAGCAGGCGGCGTGCTGATCTCCAGC 2959 28 100.0 32 ............................ AGACCCTGCGCAATCGCTAGGTCGTGCGCCGG 2899 28 100.0 32 ............................ ATCCCGTTCTTCTGGAGCGAGAAGCAGCTGGA 2839 28 100.0 33 ............................ ATATTGCTGCACGCGCCGGTTTCAATGTTTCCT 2778 28 100.0 32 ............................ GGCTTGCTGCGCGGGGGCCGTGAGGCCGGCCC 2718 28 100.0 32 ............................ GCCGCCTCGGGCGCCGATCGCATCGAGTACGC 2658 28 100.0 32 ............................ TCCGGCCGATAGGCCCAGTGGGTCACGTTGCG 2598 28 100.0 32 ............................ ATTCGTCGTCGTCGATCTCGAGGCGCAGCAGC 2538 28 100.0 32 ............................ CTCATGAGCAACGCCAGCGGCAGCTGGGCCGT 2478 28 100.0 32 ............................ AGAGATAAGGCCGGGAACCTTGTTGACCAACG 2418 28 100.0 32 ............................ AGGAGCAGCGGGAGCGCAGCCAGTGCCCACCA 2358 28 100.0 32 ............................ AGTGCCAACACTGGCCGCCCGGGCGGCGTAAT 2298 28 100.0 32 ............................ TGGGGCAGTATAGGTGCAGGCGCCAAGATCGG 2238 28 100.0 32 ............................ CGCCGCGCCGCCGCCGACGTGCAATGCGTTCC 2178 28 100.0 32 ............................ AACGAGGGCGCCGGTACCGAGTACGAGCAATA 2118 28 100.0 32 ............................ AGCGCGGCCATCGTCTTGTTGATGCTGACGGC 2058 28 100.0 32 ............................ GGTGGGAACCGGGCTTGCCGGTAGCCTGATCG 1998 28 100.0 32 ............................ ACCTACCTCGGCCAGCACCAGGCCGAGCTGGC 1938 28 100.0 32 ............................ ATCGTGCTCAGCGTCTTCTCGCAGGCCGGGGC 1878 28 100.0 32 ............................ GGGCAGCTGGTGGTGTCGGGCGCGGTGGGTGG 1818 28 100.0 32 ............................ TTTTCGGATGACAGCGAATCGACCACCCAGGA 1758 28 100.0 32 ............................ GGCTACTTCATCGACGTCCCCGAAGCCGCGGA 1698 28 100.0 32 ............................ AACACCGGCTGCGGCACCATCGGCAACACCAG 1638 28 100.0 32 ............................ AGTGGCGAGGGCGGGGGTCACAAGGTGAGGGG 1578 28 96.4 32 T........................... ATCCCAGCACCGAGCTGACAGCAAACGAGCAA 1518 28 100.0 32 ............................ ATCGGCGCCGAGCTGCCCACCCGCCAGGAAGC 1458 28 100.0 32 ............................ TGATCCAGCTCAAGCGGCGTCACGCCCATCGC 1398 28 100.0 32 ............................ CAGCTGCCGGCCCCAATGCTGCGGCACCCGGT 1338 28 100.0 32 ............................ TCCCGGTCGCGCAGAAACTCAGCCTTGGAGCT 1278 28 100.0 32 ............................ CGGCATGAGAAGGCGAAGCCTGATCTCGACAA 1218 28 100.0 32 ............................ TGGGGCAATCTGCCGTCGACCCGAAGAGCGGT 1158 28 100.0 32 ............................ TTGTCGGTGATGGGCGAGCAGATCAATGGGAA 1098 28 100.0 32 ............................ AGGGCAGGCGGGCGTCGAGGGCGACGGTGACG 1038 28 100.0 32 ............................ GTAGGGCATGCGATGCGGGCCCGGGTGATCAA 978 28 100.0 32 ............................ TCCGCCCTGATTGACGGCTACCTCGCCAGCCG 918 28 100.0 32 ............................ TCGAGGTCGCCCTGGATGCTGCCTCGGCCGAT 858 28 100.0 32 ............................ ATCCGATTCTCGGAAACACGCCGGAGGGTCGT 798 28 100.0 32 ............................ ACCGTCGGCAGGTCGGAGGCCGCCACCTGCTC 738 28 100.0 32 ............................ CGCGAAACCCTCGCGCTCTGCGATGAGGATAA 678 28 100.0 32 ............................ ACCCCGCTCGTGCTCAATATTGCAAACAGAAT 618 28 96.4 32 T........................... ACGGTCTGGTCATCGACGATGTAGGCTTCGGC 558 28 100.0 33 ............................ ACTGCCCAACACTGCGCATGATGCCGGCCTCAT 497 28 100.0 32 ............................ CGTGGCGAAGGCCACTTGAAGGCCGCCCAGGA 437 28 100.0 32 ............................ AACGTATTGATCCACGCTGATTCGGAGCGTAG 377 28 100.0 33 ............................ TAGTCGCGCTCCTGGATACAAGGTAAGAAGAGT 316 28 100.0 32 ............................ TAGCGCATACATGGCAATACGCTTGTTTGTCA 256 28 100.0 32 ............................ ATTAGCGCCATCAGCACTATCGAACATTCGGT 196 28 100.0 32 ............................ ATTTTGAAAATACAGGTACTCGCGCTTGTGCA 136 28 100.0 32 ............................ AGATGGCCCAATCTATTTCGAGAGGCCCGTTT 76 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 66 28 99.9 32 CGTCACTGCCGGATAGGCAGCTCAGAAA # Left flank : CCGATCTGCGTGACTTCATGGGGGCTGACTGGCTGACGGGCATGCGTGATCACGTTGCCATCGACGGCCCCGCTCCGGTGCCGGCCGGTGCGCGTCATCGGGTTGTCCGGCGCGTGCAGGCCCACAGCAATCCGGAGCGGGAGCGCCGCCGCTTCATCGCGAGGAAGGGCGTCTCCCCCGAAGAAGCCCTGGCAGCCATTCCGGACAGCCGTGCCGAACAGCTCGATTTGCCTTTCATCCTGCTGACCAGCCGGAGCACAGGGCAGCAGTTCCGCCTCTTCATCGAGCATCTGCCCGTTGTGGACGAACCCCAGCCGGGCACCTTCGGAAGCTACGGTCTCAGCCCGACAACAACCATCCCCTGGTTCTGACCCTTTTTTTGTCGCCCCCGCAAAAGCCTTGAGTTTCGGGGCCTTGGCGGGGGCTGCAGTTTTTGGGTGGGGGCGCTGAAAAGCTGGGTTTCTCTTTAACAATCAGGCACTCAAGACTGGTAGTCTCTA # Right flank : AGTGGAGCGATAATCAACGTGGCATGCCTAACGACGTCACTGCCGGATC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CGTCACTGCCGGATAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGGATAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //