Array 1 884773-885138 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP019791.1 Anaerohalosphaera lusitana strain ST-NAGAB-D1 chromosome, complete genome Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 884773 36 100.0 30 .................................... TCGGACGGCGAGGTTAGCGACTGGATTGAC 884839 36 100.0 30 .................................... CAAGATCCTACCACTGACACCGACCCACCA 884905 36 100.0 30 .................................... ATACTTTCCGCTGCCGCTTCTCGCATTTCC 884971 36 100.0 30 .................................... AAGTTGGTTGAACTTTTCATCTTCACTAGC 885037 36 100.0 30 .................................... CCGTCCAGCGACACACTCTCCAGTGCCGAA 885103 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 6 36 100.0 30 GTTGTGATTTGACAGCAGGCCGGGATTGATTACACT # Left flank : TGCCTTCGCGTACAAAGCTTTCCAGGTCGAACGGATCGCTCGCATCACACGTCGGCACTGAAAACCGCGTCGTCACCTTATCGCCGTCCTTCGGACAACGATCGGCATAACACGTAAACGCCGCACCCTGACTCGATACGTCCACCATCTGACCCTGCGCCAGCATATCGCTCAAAGTTTCCGCATACCATACCGGCCAACTGTAACGCAGACGAGCTTCCCTTCTCTGTTCGTTTGTTTCAACCTGATTCATTTTTCTTATCTCCATATTAGAACCTGTTTACGTGCCCCTCGCATCGGCGTTCCCAACCCCAAGCTTCACCACAAATTCTCCCCCAAAAGCGCAAACCAACCCCAAAAACCTCAAAAACAGCAACGAAACCCCGCAAAACACCCCCCAGCCCAAAAATTACAGGACCTAAACCCCCGCAAAACCAGACTCCCCAACCAACCCCAAAACCCAACAGTCCGATAACCCCCCCCATAGCATTACCCGAAAA # Right flank : TAGCTAATCCGTAAATCGCTGTCAGACATGACCTTACGGCCGCCCAGCTCAAAATAATTCGAGCTGTTTGGGCGCGGCCGGGGTTGGTTTGCGCTTTTTACCCCAGAAAATTTCCATCCGTCCGTACTGCTTATCCGTGATCTGAAGCAGCCGAACCTCACCCTCGGGCGGCAAAAAACCTTTGACTCTCTTGTAATGTACCTGGGCATTTTCCTCACTCGCACAGTGCCGAACATACACAGAATATTGTACCATGGCGAACCCGTCCTTCATAAGCCTTTTCCGGAAAATAGTATAATCTTTCCGCGCCCTCTTGGTATCCGTCGGCAAATCAAACATCGCAAAAAGCCACACTGCTCTGTACCCGCTTAAATTTCGATTTTCGGTAGTTCCAGACATTTCCCTTCTCCTGCAAAAACACGCTGCAAAGAAGCTGCCGTCCGATGAAGACCCACCATCAACGGCCCCTTATACCCACCGATCTCAACCTGCTCATAAAG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGACAGCAGGCCGGGATTGATTACACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [46.7-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 2 2211226-2212446 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP019791.1 Anaerohalosphaera lusitana strain ST-NAGAB-D1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 2211226 32 100.0 33 ................................ ATCATCTGCACATGCGGCTCAACATCCACCAAC 2211291 32 100.0 34 ................................ AGCGTCTCGGTCGTACTCTCCGCACTCATCCTCG 2211357 32 100.0 34 ................................ AGGGTAGCGAACGCCTTACCGAACTTGTTAAGAT 2211423 32 100.0 35 ................................ CACACTGTCACAGAGATAAAGGAGGTGCTGTAATG 2211490 32 100.0 34 ................................ GTACTGGTTCGGGTTGGTCAATTCCCGATGCAAG 2211556 32 100.0 34 ................................ ATGTAGCCACACACCTTGTGGCGTGATTCGTAAG 2211622 32 100.0 35 ................................ AGCATCGGCGGGTGTATTGACATCAAAGAGCAGTG 2211689 32 100.0 34 ................................ ATCTAGCCAGCTCTTAACACGGTCGATATCCCAA 2211755 32 100.0 33 ................................ GGTCGGGCCTTATTTAACCCTTTACGGAGGTCT 2211820 32 100.0 35 ................................ ATAAATGTCGCGCCCTCAAATGACTGCGTTACCAG 2211887 32 100.0 34 ................................ GTCGCCATTATCGTCCTCTTGTATTGGTGCAGAT 2211953 32 100.0 34 ................................ AACCTTCTTCATCCCCTCCTTAAATTCCTGATAC 2212019 32 100.0 34 ................................ TATTTCGGCGAATAGTCTAGACTAAAAGGGGGCC 2212085 32 100.0 34 ................................ GCCGACACTGTCTCACCGCAATACCGGCAAGCAA 2212151 32 100.0 34 ................................ GATTTGCAAGTCATTACTCGTCAAGTCGACGCCG 2212217 32 100.0 34 ................................ GCATTGTCCGATCATCCCACCATCCAGGAGATGC 2212283 32 100.0 34 ................................ CATGCTTAATCGTTTATCCGCATTCCGCTGCCAT 2212349 32 100.0 34 ................................ TATCTTATATCGCACCAAATCAAGACCAGACCAA 2212415 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ =================================== ================== 19 32 100.0 34 GTCGCTCCCATCACGGGAGCGTGGATTGAAAC # Left flank : GAGATGATTGAAAGGGATATAAGATGATGGTTCTGGTGGCTTATGATGTCAATACTGAGACAAAGGCGGGACGGGGTCGTTTGAGGCACGTTGCGAAGCTCTGTGAAAATCGTGGTCAGCGTGTGCAGAATTCGGTGTTTGAATGCCTTGTTGATCCCGCTCAATGGGTCGAATTGCGTCAGGCTCTTGTCGGCGTAATTGCAGAGGATACCGATAGCCTGCGGTTCTATTTTCTTGGCAAGAATTGGAAAAGACGTGTCGAGCATGTCGGGGCCAAGCCTGGATATGATCCACAGGGGCCAATGATAGTCTGAATGTGCCATCGCGAACCCCAGTTGCACACGGTTTTGCCGGGAGGTTCGCGATTGATGTAAATGCTTTTTGGCAAGTGAATTATGGAAACGAAATATATCTCTGTTCCGGAAATCCCCTTCGACTGCGGAAGGTTCGCGATAAACCCTTGCTAACTTCTGCAATGACAGTATTATATAACCCTTACC # Right flank : CACTGAGGATTGCTCCTTCCTGCACGCTGGCTGAGCGTCGCTCCCTTATTCTTTTACCATCGTCTTACTCCGACAAATTACTCAATACACTGAGTAATTTTACTTTATCTACAAAACAGTGTAAGGCTTTGCCCAACAACGGCTTGTAAATGCAAAAAGCCTGCCGAAAAACCTTCAGCAGGCTTTTTGCACTTGTCCGCTTATGAACGAAAGTAGCTATTCAGTCAACTTATCAGTAGTTAAAAAATACCAACAACACCACTGATGTCAGCATTGGGTCGGATCAAATCTGTTGGGTTTATTGAGCCCAGTCGTTTGCAAGCTGTGTAAAATCTAAGAGATCAATTTTCTGATCTCCATTTGGAAGTGGAGCTACATCGACAACAGGATTTGTGTTGTAGTTGAGCCAGGCTTCACCCAAAATAAGCAGGTCGGCGATGTCGATCCTGCAGTCTTTTGTGAAATCGGAATGATAGGGAGTCGTAGCGAGGTCTGCATTA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCATCACGGGAGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCCCTTCACGGGAGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-5.10,-5.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [58.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.64,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 3449259-3450142 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP019791.1 Anaerohalosphaera lusitana strain ST-NAGAB-D1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 3449259 32 100.0 33 ................................ CAGTCTCCAAATTAAGATATTAGTGTCTGTTAC 3449324 32 100.0 35 ................................ ACTCAATCAACTTCATAAACTTCTTCTGACTCTCA 3449391 32 100.0 34 ................................ AACTCCCGGGCATACTCGACATCCGAACCCCCAA 3449457 32 100.0 35 ................................ ACAAACTGTTTCGCTACCCTCACCGCCCCCCTCAT 3449524 32 100.0 34 ................................ GGTACTTGATCCATGACAACCTCACCAAATTAGA 3449590 32 100.0 33 ................................ TATCAAAGGCGCGAATCTCTCGTTATTGTCTTC 3449655 32 96.9 33 ...............T................ CTATGTGATTTTTCGCGATCTCTCGCGTTATTC 3449720 32 100.0 34 ................................ AAGTTGATGTTAGCAGTACGCACACACCGAGCAC 3449786 32 100.0 33 ................................ GCCAGCTTATGACAGCGAGGCGAAAAAGTCTGA 3449851 32 100.0 33 ................................ GTTTTGTGCTCGTGCCATAAACCTAGTATACCT 3449916 32 100.0 33 ................................ CTGTTGCGCACAGTGTACTTAGAATCACGGTGA 3449981 32 100.0 33 ................................ CTGAACAACATGGTATCTAAATGGTATCTAATA 3450046 32 100.0 33 ................................ CTGAACAACATGGTATCTAAATGGTATCTAATA 3450111 32 87.5 0 .........................CAA..C. | ========== ====== ====== ====== ================================ =================================== ================== 14 32 98.9 34 GGCGCAACCCGCACACAACCGCGAATGGACAC # Left flank : AATTCGACCTCTGGGCGGACTCGGTAAAAACTCGCAAACAGCTCGGCCCCGATCCATTCTGATTTTCACTTGCGATCGAACCCGAATTATATATAATAATATACGCCTATCAGCCAACATGCTCGCTTTGCGAAGGCTGACGGCCCGCTCTCATTTGGCATTGCCGGGAGCCGGAGTTTTCGGAAGAGAGTGTCGACGACTGCTGATCTCCGCATCCGCGTCCTGTTCGCCAGGCCGGGTCGGGTGTACGGATCATGCTGGCAGCAGTCTACGCCGAGAACATTCGCTTTTTTATATGTGCATAAGTTGCCGCGAACTCCAGGCGCGCACGAATTCCCCGGCAGGTTCGCGGAATGTGCCTAATTCCGCAGCATAAAGGGACTTACAGAAATTATATCCTATGTATTCACACGCTTATTGCTTAAAAACACAATGTCCCGCCGGGGTTCGCGATATGCGCCGCCCAAACCACTGAAAACAAACAACTTGCAAACACAGCC # Right flank : CATGTGCCGCTCGAGGCCACGGAGGCCAATCTACGTACGCAACACGCCCACACTGACGAAACTTAACCAACTCGCCTCCCACTATACCAAAAACCCAGCAAACAAAAGACAAAGCCTATGGACCCGCAAATTGCTTAAGTGTGTTGATAATGATTATCTTTATCTGTCAAGGCGAGGAAACCCATCACGGTTTAACAACACAAACCCCCATGGTTGAAATCCACCGACACACACCAAAATGTCAAACCGAAAATATCCCATCACAAAACCCGAAAACCGGACCAATCCTCTACTCCCACCTCCAATTCCCGAACCCACCAACCGCATAACATTTAAATGAAAAGTCCGCCGAGAATGGACCTACCAAAAAGCACGCCTAATGCGCGGCTGTTATATTCTGCCCCGGCCTAACGGACGCACGACCAACACCACACCACCTACGAACGACCAACCACCCGGCCAACCCACGCCGTCACCAAAAAACAAATCGTCACACTCTG # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGCGCAACCCGCACACAACCGCGAATGGACAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,1] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.30,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA //