Array 1 2060-615 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACSVC010000075.1 Lactobacillus delbrueckii subsp. lactis strain 12109 L_I_202_12109_c75, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =========================================== ================== 2059 35 75.0 39 .C.T.....C...C.G.-...G...T.T........ GCATAGTGCGGATTGTAAGTAGCGACAAGCTTTGTTGCA G [2046] 1984 35 80.6 35 C..T.-.C......T...................AT GTGCAAAGCAGAATGAGTCTCCGTAAGGAATAAAA G,C [1950,1953] 1912 36 94.4 36 ....C..C............................ GAAAATAAAAAAAGTTGCAAGCGAAAGCTTGCTAGA 1840 36 100.0 36 .................................... AGAAAGAGGTAATAAAAATGATTTCCGAAAAAACTA 1768 36 100.0 43 .................................... AATACGACAACACTTATAACTATTGCGGTTATCTTGATAACTA 1689 36 100.0 37 .................................... TATGATGAAGATTTTAGAAAAGAGATGGAAAATTTCA 1616 36 100.0 37 .................................... CCGAACAAACTAGAAAAGCTATGTCAATAGATATCAT 1543 36 100.0 40 .................................... ATAATAATTGAAATGAAAGAGGTAAACAAAATGGAATCTA 1467 36 100.0 41 .................................... TCACCTAACCGAGCAACAAAAAGAAAAATTCCTCACTCACA 1390 36 100.0 39 .................................... ATTAAAATGAATTTAAAAGAAGTTTTGCAAGAAATTACG 1315 36 100.0 36 .................................... GCAAAAGGATAGCGTGATCAGTCACATGGACGACGT 1243 36 100.0 38 .................................... TTTACTACCGTTCAGTACTCGTTAGATGTTAGTCAAGA 1169 36 100.0 37 .................................... CTGTTAGACTTGAGACAAATCAAAAAAAGGAGACTAA 1096 36 100.0 37 .................................... AAAATAAAAAATATTTTTTTAAAAAATAGTAGACATT 1023 36 100.0 37 .................................... TTTTAGGAGGTAACAAAATGGAATTAGAAGAAGTTTT 950 36 100.0 40 .................................... ATAATAATTGAAATGAAAGAGGTAAACAAAATGGAATCTA 874 36 100.0 41 .................................... CAGTATCGCTCTGATTGTGAAGAATGGTTAGAGGACCTCGT 797 36 100.0 38 .................................... TCTTTGAGGATCAAACGCTCGTTTGTGAGGTATTCGTA 723 36 100.0 37 .................................... GACAGAAAAAAACAAAAAGTTTTAAAGTTTTGCTTTT 650 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =========================================== ================== 20 36 97.5 38 GTTCTCGTCTCCTTCTAGCGGAGATAAGTTGTTAGC # Left flank : TGGCAAAAATCCGCACGCTGAAGCGTTTGATCGCCCGGCAGACTTGAACTAGATAAAGTAGCGATAATTGGATTAAACGGTTGGCCAGGATCTTATGGTTCAGCAAGTCATACAAGCCTTGGACCAGCTGCCCTTGAAAGTATGGTCCAGCGCAGCGACCATGCCGATATTGTAGATCAAGCCTGAAATAGTAACGACCACAAGAATTGGCGCTTCTTACCAGAAGTAGCTGCTCATTTTCTTGGGGTCGCGGGTATTTTCTGCTTCATCTCGCTGCCTCCTCTGACTGCAATTTTGCCCGCTTCTCTGCATCCGCTATCAGCATTTCCACCTTCATCATAGCACCGATTCTTCTTCAGTCTAGTCCATTTTGGACGGAATGAAGGAGGTTTTTTATACGAAAAAACGGCCAGCAACTGGCCGTTTGGCTTATGTCTCCTTTTAACGGAGATTGTGCATTGAAAATAGATTGATTAATAATATAGCTCTTTTCTTTAAAT # Right flank : AATTTTTGCTATTATTACTTAAACTTCCCACTTGCAAACGTGGGCTCGTACCTTGAAAATTCAATAGTTTAGCCAATAAAAAAAGCACAAGGCCTTTGTTCGCTTGATATAATTCAACTACAACATCATCAATATCAAACGAAAGGCTTGTGCTATGTCTAGTTTACCATTATTCGATACTAAGAACGAACCTAAAATTGCCCGTTCTGTTGAAAAGTTCTTCAAGGACTACAAAGTTATGGAGCTTCTCCGCAGATGTGGGCTCCGCAAGTCCAAAGGAATCCCGCTTTGGTCGATCCTTTCATACATCTTCAGTAATGTGTTTCCAGACAGAAGCATGTACATGCAACAGAAGTCTGGCAAGTGTACTTCTGGCTTCTCCAAGAACACCTACTATCGATTCATGCAGAACCCACATATCAACTGGCTTCGCCTCACTATTCTGCTAGCTGAGAGGATCGTCAATGGGCACCTGAAAGATCTGACTTCTGACCAACGTG # Questionable array : NO Score: 3.14 # Score Detail : 1:0, 2:0, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTCGTCTCCTTCTAGCGGAGATAAGTTGTTAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.60,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-21] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [65.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.64 Confidence: LOW] # Array family : NA // Array 1 69816-72355 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACSVC010000002.1 Lactobacillus delbrueckii subsp. lactis strain 12109 L_I_202_12109_c2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 69816 33 100.0 34 ................................. AGTTTTGACACGTCGTCTTGTGCCTTTTCGCCCA 69883 33 100.0 32 ................................. AACGACACCTGAAGTCCAGGCGGATCAAACAA 69948 33 100.0 36 ................................. AAAGTGTCCGTCACCTCTAACCACGCCTATCAAGTC 70017 33 100.0 33 ................................. ATTAGTAAGCCCTCCTTGCAAGATTACATCAGT 70083 33 100.0 35 ................................. GTCGCCCACTTGGGTCACTTGGACAAGCACCATGT 70151 33 100.0 35 ................................. GTTGAAGCAAACAATATCAATGCACAAAAGACCAG 70219 33 100.0 35 ................................. AAGCGATCTTGTCCGGTTGGTCAAAGGCAAGACAG 70287 33 100.0 35 ................................. AAGCGATCTTGTCCGGTTGGTCAAAGGCAAGACAG 70355 33 100.0 35 ................................. ATCTAACCCAAAAGAAGGAGCGTCAGAAGAGATAA 70423 33 100.0 36 ................................. GACCAGGCTGTCCCAACATTTATCCGGCAAAAACGT 70492 33 100.0 37 ................................. TAGTTAATAGATGGCATCAGCGTGATGATCGCTTGCC 70562 33 100.0 36 ................................. TTATTGACAGTCAAGCAAAAGGTAAGAACGTTGCAA 70631 33 100.0 35 ................................. TCAAACAGGTATTAGGTGATAAGCCAGCAGATAAG 70699 33 100.0 33 ................................. CCACTGCTAAGACATTTAACAACTGTTCTTTAG 70765 33 100.0 36 ................................. ATGACGGGCATCGGCTTAATTTCATGGGCTTTTGAT 70834 33 100.0 37 ................................. CAAGTTTGGGTTGCCGAACCAATTTAGCGTGTACGGA 70904 33 100.0 33 ................................. TGCAATGTAGGATTAAGCACTTGATCGCACAAG 70970 33 100.0 37 ................................. TCAAGGCCTTTGAGCCAGTCTCCCCAGTCAAAGCCGC 71040 33 100.0 35 ................................. TTATTGTGCGTGTACAAAGCCGCAAAGCCAGCGGC 71108 33 100.0 34 ................................. CAGATAGCCCGGCCTTGTCGAACGTCTCAGCCTG 71175 33 100.0 36 ................................. AGCGCATCGGTCATAGCTGATGCCAGGTCAGTCAAG 71244 33 100.0 35 ................................. AACGCTCCTACGGCGTAATCGGCGACCCGGAAAAG 71312 33 100.0 34 ................................. GGTGATAACCTCTGCGGCGTATTCCCGCTTTTGG 71379 33 100.0 35 ................................. TTCTGGCCACCTTGGCCAGCATGGATAACGGCGGT 71447 33 100.0 33 ................................. CCTGCAACTAAATCCTGTGTAAAAGCCGTGCTG 71513 33 100.0 37 ................................. TGGCGACTATGATATGCACGACTACCGGATGCTCTAC 71583 33 100.0 35 ................................. AACTTGATGGCAAGACTTATCCGGTCTACGCTAAC 71651 33 100.0 34 ................................. TCAATCCATGCACTGAGAGTAACCGTTTGCCCAT 71718 33 100.0 33 ................................. ACTGACTGGTGAAGACGTCAACCGCTTGCGTAG 71784 33 100.0 35 ................................. TTCTCCCAATCGCGAAAGTTTGGCTATGACATCAT 71852 33 100.0 34 ................................. GCGATCGGTGGCACTCTAGTGGCGGCTGCTTTGG 71919 33 100.0 35 ................................. CCGCATAACTGGCAGACAGGTTATTTTATTGACAC 71987 33 100.0 35 ................................. AGTCGATCACTGAAGGCGACGTATCCGTATCCTTT 72055 33 100.0 34 ................................. AACTCCATTGCTGGCGGAGCTATGGTCGGCAACT 72122 33 100.0 35 ................................. ACAGGCATGGCTACGCAGTTCAAGACCATGGGTGA 72190 33 93.9 33 ..............................G.G GCTGAAGGGAAAGTAGCAGCAGAAAGAAGAAGC 72256 33 100.0 34 ................................. ATTTGCTGGTACAAAAGTAACAGAGTTACAACAA 72323 33 84.8 0 ..........A...AA....T......C..... | ========== ====== ====== ====== ================================= ===================================== ================== 38 33 99.4 35 GTCGCATCCCGCATGGGATGCGTGGATTGAAAT # Left flank : CGGATACCCTCCGTTTTTATGGAAGTAAGTGATTGTAGATGATGATGGTAATTGTCAGTTATGACGTGAATACTGAAACTGCTTCGGGAAAGAAGAGACTAAGAAATGTTTCCAAAATATGTAACGACTATGGCCAAAGAGTTCAAAATTCAGTATTTGAGTGTCTTGTAGATTCTACAAAGCTTGAGGAAATGAAGGAACGCTTACTAAAGGTATATGATGAAGAGTGCGACAGCTTGTACTTCTTCAATGTAGGCAAAAAATATGAGAACAAAGTTCAGTCTTATGGGTGTAAACAAGTATTAGACTTGGGAAAGCCAGTTGTCTTCTAATTATCTAGACAGTGCGAGTGTGAAGCTAACAGAATTAGGCAGAGGATTCGCACTGTTTTTGACTATTTTTTTGTAGTCTTGAATATAAAATTGCAGTTTTTTAATGCTTTTTATATTTTGTATGCCCAATATTTAGCTGTGAAAATGCTTTTTTTACTAAATGTTGCG # Right flank : TATCGCTTAGATATGTGGATGCTTGATGGTCAAATTCCACTAAAAGCACTCCCTAGCGGGGTGCTTTTTAATATTTCGCTAAATCAAACGCTTCACCAAGCAAGCAGGAAAAGATTATAGTAAAATATACTGGTTATAAAAAAGCTGAGCCAAGCTCAGCATCCCCAAAACAAAACTTAGTTGAGGAGAACAAACACATGCAAGATATTTATATTGTTGCGGCCAAGCGAACTCCATTTGGCCGTTACCACAAGCAATTGGCTGACTTTTCCGCCATCGACCTGGGCCAAATCGCCCTGCACGGCGCATTAAAAGAAGCCGGCCTTGACGCCGAAGCCCTGGATGCCCTCTTCATGGGCAATGTCCTGTCTGCCGGCTTAGGCCAAAACATGGCCCGGCAAGTTGCCCTAAATGCCGGGATGCGGCAGGACTCAGTCGCCGTGTCCATCAACGAAGTCTGCGGCTCCAGCCTCAAGGCTGCCCGCCTGGCTGAAGCTCAA # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCCGCATGGGATGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCATCCCGCATGGGATGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.40,-9.60] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 386-1161 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACSVC010000031.1 Lactobacillus delbrueckii subsp. lactis strain 12109 L_I_202_12109_c31, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 386 36 100.0 38 .................................... TCTTTGAGGATCAAACGCTCGTTTGTGAGGTATTCGTA 460 36 100.0 37 .................................... AAAAAGCTGGAAGATGAAGGGCTAATTGTTACAGGTA 533 36 100.0 33 .................................... TAGCACGCTATGAGAAGGATAGCGGAAAATTGT 602 36 100.0 39 .................................... AAGAGTGTAAGGAAGAACGGAGGAAAATAAAATGACTAA 677 36 100.0 38 .................................... CGCCAAAAATGATCAAAACAACCGACAAAAACGGCAAG 751 36 100.0 38 .................................... ACTAAAGAAAAAGAATACATGACTAACTACATGAAAAA 825 36 100.0 41 .................................... TCTACAGCGATTTACTTAAATGGTCTGGTGATGAGTTTGCG 902 36 100.0 35 .................................... TTGTAAATGACTTAGAAGAATTCGCCCAAAATTGC 973 36 100.0 39 .................................... TCAAGACCTTGTTTGTGAAATTTTCGTTGATACTAAAAA 1048 36 100.0 42 .................................... CAGATCTTGCAATTGAAGATAGAGCGCAAGGCAATTATTTTG 1126 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================== ================== 11 36 100.0 39 GTTCTCGTCTCCTTCTAGCGGAGATAAGTTGTTAGC # Left flank : CATTGACTGCCCATACGGCTTTCGTCTTTTTGCGCTATATGTTCATGTCAGTTGAGAAGCGAAATGATGAAGATGATAGGACAATAGGCGAGCTCTTTTATTGCATGGTAGACGAGCTTGCGGACATCACTTTCAATCACTCCCTTCAGATCATGGTAGAAGCCATGTTTGAGAGCGTGAAAGAGATCTTCCAACCGACAGAAGAGCAGATGGAAAGGTTCACCAAAGCATTCATTTCCCGCCTCCCGAAGTACATGCAGAGGCATTAACGCCATCACTAGCAGCTTAATTGAATATTTACTGGCTAAACTATTGAGTTTTCAAGGCTTCATAGTTCTTTTTGGTGTGGGAAGTTTAAGTTATTAAATATGTGCTGAGGCACGAGG # Right flank : CAGATCCTGTTTAAAACGTTATTACGTCGCGCATCCCCAAGCATTTGTCTCGTCTAAATCCTGGTCAACGCCCATCAAACAGCATCCCTCTTTGTCCTATTTTTGGACAAAAAAGGCACCTCTGCTAATTGAGAACATATAAATTATACCACACCAGATGCTACACCACGATCACCTTAGGTACTGACACTGCCTTCATTGGTGCGTCTGGACCCAAAATGTTAATCTGCTTGTTATTCACCTCATCTGGCAACAGATATAGAGTTATCATTCCATCATCTGGAACTTCTTTTTTCAAAATCCCAATCAAATGGTCTTTCGTAGTATCTGACTCCACCTCCCGTTCATACAGGCTGTACTGCTTCATGTCAAATCCCAACTCAACCAGCCGTTTCCTGTATTCCGCGGCTTTCTTTCGCTCTTCTTTGGTATTTCTAGGCAGATCAAAGCTTAAAAGAAGTACCATCATTTTCCTCCTTGAATGAAAGTCGGCAACTTCA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTCGTCTCCTTCTAGCGGAGATAAGTTGTTAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.30,-6.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [61.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA //