Array 1 2723-3086 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABBNL010000005.1 Alkalihalobacillus clausii strain CSI08 NODE_5_length_317229_cov_17.978, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 2723 32 100.0 34 ................................ ATGTCAGACATGGCCTGATTGGCAAGCGTATATC 2789 32 100.0 36 ................................ TTTGGGCTCCTAATAACGTTTTATACATATTCTCAC 2857 32 100.0 33 ................................ GATCATCGTTTCCCCTCCTATCTATAATCCGCA 2922 32 100.0 35 ................................ TGAAATTGCGCCCTCCTGCGTAAACAGTGGGGCAA 2989 32 96.9 34 ..........T..................... CCCATAATCGTGTCTTTAGCATCGCCATATAGTG 3055 32 87.5 0 .............C........C.......TC | ========== ====== ====== ====== ================================ ==================================== ================== 6 32 97.4 35 GTCGCACTCTATGTGAGTGCGTGGATTGAAAT # Left flank : GCCCAGCAAGCCATTCGGTTAGTTAAACAACTTGAATTAGAAACATCGTCGATCCCGATCATAGTAAAAGGGAGTTTATTAGAGAAAAACGAATTTGTGCGCCACCATTTTGCCGAAAAACTAAAACAATGTTCAGCTGACATTTCGATTGTTTGTAAAAACCGACCAGCCGTAACAGGCGCTTTGCATGCATGGAAGATTTCAAGTCACCATTAAATAGGACCAACTTTTGTGCCTGGGCCGTTTCTTTAGAACGATTCAAGAGACAATGTTGAACCCAAGGGAAAGGATCACCTAAACGAGGATAACGAACAGTCAAAGTGCGAACCCCAAGCGCACATAAAATCCCTCGATCACCCGCACCAAAAATGGCCTTATATATGTGTTAAAATGTACAAAGATGTAATAATATGGTCTCATTTGCTGTGCTATGATAGAAAATAGAAGCGAAATCAATCATTTTCGGTTGTTTATTTTCCGGAAAATGGGTAAATGTCGCT # Right flank : CTTTTTAACAGATGCTACCGATTCCGCATCTAAAGGTCACACGTGTGTAAGTAGAGTTTGGCCCCCACTCTTTTTCACGCAAAAACGTCGCACTCTATTTTGAGTGGAACGATGATCACTTCTACCTCTTGTTTGATTCCTTTCCTAACAAACCCATTTTCTTCTTGTAAAAGGTCTTTTGGATAAATGCAACTACCATTCCCGTGTGGAGAGTGCAAAATGGCGTAGCCATTAAAGCGAATGTGCTTTCTGGCGCAATTGGGTTGTAACGAATTGGACAAACGCTTTGACGACAGAAAGGTCGAGTGCGGAATTGGAATAGATTAACCACGTTTTTCTTAATAGTGGGTGGTTATCAATGGCAAGGATGCGGTTGTATAATTGGTCATGCGGACGAAGGGAAATTTGAGGGATGATTGCGTATCCTAAGCCATTGCGTACCATTTCTTTGCAAGTCTCGATACGGTCGACTTCCATCGTTACCATTGGTGGCTGGCTAA # Questionable array : NO Score: 9.13 # Score Detail : 1:0, 2:3, 3:3, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTATGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.80,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 16885-17117 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABBNL010000005.1 Alkalihalobacillus clausii strain CSI08 NODE_5_length_317229_cov_17.978, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 16885 32 100.0 34 ................................ ATTTTGAAATTGGAAATCCAATAAGTTCATTCTT 16951 32 96.9 36 ..........T..................... TTCGTGAAACCTCACGTCAGCATTCACTACAAAACC 17019 32 100.0 35 ................................ AATAAATGGTCTGTAGATGATCTGTACACATCTAT 17086 32 75.0 0 .G........TC..........C.CA.A..C. | ========== ====== ====== ====== ================================ ==================================== ================== 4 32 93.0 35 GTCGCACTCTATGTGAGTGCGTGGATTGAAAT # Left flank : AAACAAATATATAGGAACAACATCAGATTCAGTACAAGAAGAAACGATTCTCTTATCTCCTCAGGCGATTGAGCATACGCCGTCATAAAAAATACCCCCTTCCGAGCTATATAATCAATGTTTAGGATGTCTCTCATTAAAAAAGCAAGCGTTACCAACATCCTAACACATGGACAAATCGTGTGTCTCTTATTGTAAAAACGGCGGTGGTGTTAGTTAGAACCCTTAGTATTACAGAATAGCAATACGGTGGAACGATCCTTAAAGGCAAACGATTCTCGATTTCTTCAATAAGCATTCGCCGATGCTCACTTTTCTCGAGTGCGAACCCTAAGCGCACATAAAATCCCTAGATCACCCGCACCAAAAACAGCCTCGAATATGGGTTACTATGTACAAAAATGTAATAATGTGACCTTGTTGGGTGTGCTATGATAAGAATTAGAAGGGGAACCATTCGTTTTCGGTTGTATATTTCCGGAAAATGGGTGAAATTCGCT # Right flank : TAAGACAAGCCCCACCGCTTGCTACAACAAGTCTTTTCCCTGCTCAATTCGAGTGCAAAATACGTTTCTCTTACTAGACCAACAAGTGCATCACACCTATAAATACACGTATTAAAACACAAAACTAGAAAGTAAATTCCAATTAAGGGAGGAGTAAACAATGGAAGAGAAAGAAATGCTAGAGCTCTTGTTACAGAAGGTAACTGATCTGGAATTGGGGTTGAAAGAGCAAAAAGAGCATAATGCCGCGGTAGCAAAAGATTTAGAAGACCAAAAAGAGCATAATGCTATGGCTGCAAAAGATATAAAAGAACAAAAAGGGCATAATGCTGCGGTCGCAAAAGATTTAAAAGAGCAAAAAGCCTATAATGCAGCATTCGCCAAAGACTTAAAAGAACAAAAAACGCAAGTTGCTGGGATCACAAAAGAACTAAAAGAGCAAAAAGAGCACTACTTGGCCATGGCACAAGATATCAAGGAATTAAAAGAAGATCAGCTCA # Questionable array : NO Score: 8.51 # Score Detail : 1:0, 2:3, 3:3, 4:0.65, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTATGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.80,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 70568-70797 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABBNL010000005.1 Alkalihalobacillus clausii strain CSI08 NODE_5_length_317229_cov_17.978, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 70568 32 100.0 33 ................................ GGTAATTTTCCGACCACTGTTATGCGTACCGTA 70633 32 100.0 34 ................................ CTCAATGCCGTCCATGGAAGGGTCTGCTGGTTCG 70699 32 100.0 35 ................................ TTTAAAGTACGGTTTGATGAAAGAGGAAAGCCGAT 70766 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ =================================== ================== 4 32 100.0 34 GTCGCACTCTTTGTGAGTGCGTGGATTGAAAT # Left flank : GTATCCCAATTATCGCGATTCAAATACTGACGATTATCGCCGCCAAAAAAATGATGGACGAAGACAAAGCATGGATTAATAACGTTAGAAAAGAAAAATAGGAAGGAGCCATGTAAAGCCTGCCGGCTACTTTTGCTGGCAGGCTTAAGCTTTGTATTTTTGGGAAAACTCGTATTTATGAGTGGCTGCTGGGATAGTGTTTGTGGAATTGGCGATTGCTTGCAAAGAAAGGCATCGATATTTAACCTATAAAAATTAAAGGCGAAAACATGATATAATTTTTTGTAGACTAACACAAATATAGCAAATAGCCTTTTATAGTGCGAACCCCAAGCGCACATAAAATCCCTAGATCACCCGCACCAAAAAAGAGCTTAAATATGAGGAAGTGTGTGTAAAAGTGGTGAAATGTTGTTGGTTTCCCATGATATGATAAAGGAAAAGAGCGGCTTTTCTCTATTATTTGTGGTTTAGATTCCAGAAAATAGGGAGATTTGACT # Right flank : TGTATTTTCAATTCGATACAAAAAAAGCCTCGGCACAAAAATGCTGGGGCTACAGTTTTTAGAATGGTATGTTACTTTTGCCTGTTGATTTAAAGGTACTTAATTTCGCCTGCAGTTGAATCAAAATTTGGTGGGGTAAATTGGCAACGATGGCTGGCAGTTCATTCTACCAAGGTCCATTTCTGAAAGATAGTCTGTGTTAACAACAAGGGAACATGCTATAATTGAAAAACAATAGCATAACGGTTACTCAAGGGTGGTCGGCACACTCCCATGAAAGGGGGTGTTGCTGTATGACAGTATTTGAAGGAATTTCCCTTATGTGACGTTTGGGCTTCTGATCGTTGCAATGCTGTCATTTCACAACCACAAAAAATAATCCACCCTTGAGTTAGTGGCTCAGGTGGATTATTCGTCCAATCGGCCGATCCCTTGCAGGGAACCGAGCTATTGTTTGACTGAAGGTGTTACAGCACCTTCAGTCTTTTTACTTTAGTCAT # Questionable array : NO Score: 8.86 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTTTGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.40,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [65.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 4 81521-82411 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABBNL010000005.1 Alkalihalobacillus clausii strain CSI08 NODE_5_length_317229_cov_17.978, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 81521 32 100.0 33 ................................ ACAAAGTGCCGTCGTTTCGCTAACATCGCCGCC 81586 32 100.0 36 ................................ CCTATGGTTTTACAAGAATTAGGTGTGTCAGCTGAG 81654 32 100.0 33 ................................ TACTTCCTCCGTAGTCGTGTCGCCGGCAGCCCG 81719 32 100.0 35 ................................ CACCCTTTAGCTTTTAATAGTCCCATCATTGCCAC 81786 32 100.0 35 ................................ ACCTTTACAATATAGTCCATGACATTCAAGACGTC 81853 32 100.0 33 ................................ AAACCCCATATCAGAAAAGTGATTGAGATAAAT 81918 32 100.0 34 ................................ TAGAATATCGCGAGAAATCGAAGTTGCTAGGCAC 81984 32 100.0 33 ................................ AGCGCTGGCCGTACGAGCGTATCCAATGCCAGT 82049 32 100.0 35 ................................ AAACAGTGTCGGATTTAAATCTTGTTGGAAATTCG 82116 32 100.0 33 ................................ GGCGACCCAATCGTGGAGTTCCGCCTCAGTGAC 82181 32 100.0 35 ................................ TTTGAAAAACGTAGTCAATGCATCCTTTAAGGTTA 82248 32 100.0 35 ................................ TATTAAGTTTTCGCGGTACAAGGTTATTCCTCCTT 82315 32 100.0 33 ................................ ATCAGGGTAAGTAGCTGTTCTTTTTTCATTTTT 82380 32 90.6 0 G..........................A...A | ========== ====== ====== ====== ================================ ==================================== ================== 14 32 99.3 34 ATCGCACTCCTTGTGAGTGCGTGGATTGAAAT # Left flank : AACTGTATAGGTAAATGGAAACACCAAGATACAGAGGAACAGCGTGATAATAGAGTTGTAGAAACAACAGATCAAAGGGATGAAATTTTGCAAATTGCTACCTTTTGTCAGGAAATAAAAGACATAATTTCATATCCAAAAGGTAAAGTGGAGGGTGCTGGGAAAAATTCGGAGGCATCTCATCAATGGTTCACATTAAATAAAAGAAATGAGAAGCGAATCCTACCAACGATTCAAGAAGAACTATTTAAAAAAGATAACTCTCATTTGAAAGAACTATATGAAATAAAAAATAAACGCTAACAAGAAGCAAATATGTTGGTGCGAACCCTAAGCGCACATAAAATCCCTAGATCACCCGCACCAAAAAAGAGCTAAAATATGAAATAATATGTGTAAAAGTGTTGAAATGTTGTTGGTTTCCCATGATATGATAAAGAAAAGCAGCGGCTTTTCCCTATTATTTATTGTTTTGCTTCAAAAAATAGGGGGATTTCGCT # Right flank : ATATATTTAGATTTGATAAAATGTAAGTCCTGTTTTATTAAAAAAATGCCTGCAACTAAACAGCCATTACTCAACGATCCGACAGTAATTGTATTCCAGTAAAGTCTAATAAAAAGAATAAAAAGGCCTTGGCACAGATGCCAAGGCTACAATTTTTAGAATGGTATATCACTTTTGCCTGTTAGTTTAAAGGTACATTAACTTCGCTCCGCAGTTGAATCAAAATTTGACGAGGATTAAAATGGCAACGATGGCTGACAGTTCGTCCTACCATTTGATCAACGGAGGCCTGTTTCTGAAAGATAATCTATGTTAACAATAAGGGAACATGCTATAATTGAAGAACAATAGCATAACGGTTACTCAAGGGTGGTCGGCACACTCCTCCGAAAGGAGGTGTTGCTGTATGACAGTATTTGAAGGGATTTCCCTTATGTTGACGTTCGGACTTCTGATCGTTGCAATGCTGTCGTTTCACAACCATAAAAAATAATCCACCC # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCGCACTCCTTGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.50,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.27 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 5 94077-94638 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABBNL010000005.1 Alkalihalobacillus clausii strain CSI08 NODE_5_length_317229_cov_17.978, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 94077 32 93.8 34 ..........AT.................... CCTACAAGGGCAACAATAGTTTCACTATGATAAT 94143 32 100.0 35 ................................ CTACTTTGGTCATTTATAATCCCTACCTGCCAAGG 94210 32 100.0 34 ................................ AAAAGGATTCCTCCATTCTCTGCATAAAATCTTC 94276 32 100.0 35 ................................ GTCGAGATTATATAGGTATCGTCCAATTCCAAATT 94343 32 100.0 34 ................................ GATGACACGGGCCTGAATTTCGATTGGCCGAGAA 94409 32 100.0 33 ................................ ACTTTTGTTGCGTTGCGCTCTTTGATTACTTCG 94474 32 100.0 34 ................................ AGTTACAGCAACTTATAGCTTCACTCGGTCCAAT 94540 32 93.8 35 ..........AT.................... CAAACGTGCATCTTCTTGAGTTTTCAAATTGCTAC 94607 31 93.8 0 ............-.......T........... | A [94617] ========== ====== ====== ====== ================================ =================================== ================== 9 32 97.9 34 GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT # Left flank : CGCCACAAAAGAAAAGTGCCTCCCACGAGAAATTGATGTGAAGCACTTGCAAGACACGCTGGTGAACCAAGGGGCGATATTAAGCTGACATTTTCGAATAAAAGGATTTGCAATGGTGCTTGAAGATGGACTACCTATAAAAATGAGACGAACAAGAAACTCCAAACATTGGGTTATGGAGTTTCTTGTTTTAGGTGTTCGTGGTATTAAAATGGGGTGGGATTAGAAGGATAGGTGGGAGCAACGGTTTAATTGGGTCAACCTAAAGAAGTTTGCCATTGAACATTAACGCCGTCGAAGACAAAAGCTTAAATCAGACGGTGCGAACCCCAAGCGCACATAAAATTACTAGATCACCCGCACCAAAATAGAGCGCGAATATGAGCTTATGTGTATAAAGATGTGAAAATATGGTTCATGTTCCTTGATATAATGAAGGGAAAGCGCGACTTTCCTGTATTATCTGTGGTTTTATTTCCAGCAAATAGGGGAATTTCGCT # Right flank : TTTGCTTCCGGCGAACGGAATGTGGCTTTCTGCTCGGCGCACTTTTTATAACTGCGCCAATTAACATCGACATGAATCGACGTTCGCTTGCGATAACGACTAGTCATGCAAAAAGCAAGTCCGAAAAACCAAATAAGCAATATAGGCGCACCGACGCCCATATTGCTTATTTTCGTTTTTATTGTCTATTTCAACGCTGGCCAAAATGCTTTATTCGCTTCGATTAAGTCATCTAGTATATCTTTTGCTACTTTTGCACTTGGCACGGTTTTCGATAATGTGATGGCTTGCCATAGTTTTTGGTAGGAACCTTCTTCAAACGCTTCTACTACTAATTTTTCGACGCCAACTTGTTGCTCCATGAGACTCTTTTGGAATCTAGGGATTTCTCCGACAACTAGTTTTTCTGGGCCGTTGCTGCCGACGATGCACGGGATTTCTACCATTGCTGTTGGGTCAAAGTTCGGGATGGCGCCATTGTTTTCGACAATCATTAACAT # Questionable array : NO Score: 9.16 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT # Alternate repeat : GTCGCACTCTATGTGAGTGCGTGGATTGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.40,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 6 101594-101957 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABBNL010000005.1 Alkalihalobacillus clausii strain CSI08 NODE_5_length_317229_cov_17.978, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 101594 32 100.0 35 ................................ ACACACAGCCCATTGTCTCTTCGTTTCACAGCTTC 101661 32 100.0 34 ................................ AATCACCTAATTTCTGTTGCCTTATAATCTCTTG 101727 32 100.0 34 ................................ AACCATGTGTTTGTAATCGGCAGAACTAATACCG 101793 32 100.0 35 ................................ CGTCCGGGGCATATAAATTGAATTCTTGGACTAGG 101860 32 96.9 34 ...........C.................... TTGCATTTCCCGTAAACGGGCAAAAAAAGGCGGC 101926 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ =================================== ================== 6 32 99.5 35 GTCGCACTCTTTGTGAGTGCGTGGATTGAAAT # Left flank : ATTTACGCATGCAGGTCAAGCACTGCTACTGAGAATGTATACACCAGGGGTCATTACCGCCATTATCGTGACCCTTCCATATTCACTATATTTGTTTTACCGGTTAGAAGCGGAATATAATATTCAGGTTAATGATCTAATTGCCAGTATCCCATACGGACTGACCATTATTCCAATCGTGGCTTTCGGTCATCTACTAGCTAAAAAAGTGATTCGGTAAAAAATGATAAGGTATTTCGTGGATCGTTTTTGGATTTAACATTGATAACAAGTGAGCAAACAAATATAACTTTGAGAAATGCTTTCTAACCTATTATTTTGGTGCGAACCCTAAGCGAACATAAAATTCCTGGATCACCCGCACCAAAAAAGAGCCTAAATATGAAATAATATGTGTAATAATGTATAAATCTCGTTTACGTCCTATGATATGATAGAAGAAAAGGGTGATTTTTCCCTATTATTTATAGTTTCACTCCAAGAAATAGGGAGATTTCGCT # Right flank : TCCATAGTCTTTGGATAGGGCATCGATAGGGTTAGCCGGAGAACTCTATGTTTATGCCATTTCCATTAGGCCACACGGCAGTTTTCTTTTGTGGGTTGTGAAAATAGTGTCCACGTAAAACGAGAGCCAGGAGTTTTCCTCCTGGCTCTGTCTGCTTTTTTCAAGAATTGCTTTGCTAAAATGCATGACTAAACAGCTGAACCAATCCGTTCGATGTGGATTTTTTGCTGATACTGTTCGGCTTGTGAAAAATCAATCGTTGGCAGCCAGTGGAGGCAGTTTGCCAATGAGAGGGCGCTGCCTGCTAATAGAGCTGCTTTTACATCGTTTGTTTTTCGCCACTCGCGTATAAAGGTGCCGAGAAAAATATCGCCTGAGGCGGTAGCATTTGTTACGTTAATCGTTGGGAGCGTGACACGCCAGATGTCTCCGTTGATTTTGGCGACTGTTCCTTCGCCGCCTAATGTGACGATGCAGTTAGGGTAAGGGCTGTTTTTTAA # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTTTGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.40,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 7 108545-108842 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABBNL010000005.1 Alkalihalobacillus clausii strain CSI08 NODE_5_length_317229_cov_17.978, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 108545 32 100.0 35 ................................ CCATCTTACAATTACCGCGTTTCTTTTGTTGGACG 108612 32 100.0 36 ................................ TACCAGTATTCAAACATAGTGCCATCACGAACAATT 108680 32 100.0 33 ................................ TCGAACAGTTGTTACATCAAAACGGTGTGGAGC 108745 32 100.0 34 ................................ TCGCGTTGCTCTTGTCTACAATTTGCCGCCTCAT 108811 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 5 32 100.0 35 GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT # Left flank : AAAGCAAAAGAAGCAGCGAAAGAAATGGCGAAATCAAAAATTCGCATGGTTGGCAGTGAAAACACGGTTGTGCCAGCGTTTGCGTGAAAAGTGTGAGCCCGGACTGTCACCTTCGCTTGTTAGGCTATGTACTAACAAGCGGAGGTGTTTTTTCATTAATTGGGGAGGAAGGGAGAAGAACTCAATCGAATAGGTGTATAAGCAAGGAACCTCCTTACGCAAATAGAAGCTTTTTAATGGAAAGAGTAAAGTAGAGATAGACACAATTGAGCCAAGGAGATTAACTTTACAATTATTCATCTTTTGAGCCGTGATTCTTAGTGCGAACCCCAAGCGCACATAAAATCCCTAGATCACCCGCACCAAAAAAGGACTTTAATGTGGGATAATATGTGGAAAAGTGGCAAAATGTTGTTGGTGTCCCATGGTATTATATAGAAGAAGAGCGGCTTTTCTCTATTATTTATTAATGGGTTTCCAATAAATAGGGGAATATCGCT # Right flank : TTTTACCCCATACGACAACGCTAGTGAAGCTTGGAATTGGTTACTGTCCAGTTCCCTAATTTAGGGCTCCATTAGAATTAGGGGAAAAAGTAATGCAGAAATTAATAAAGGAACGAAAACAAGAAAAAGTTTATAGTTTAAAAAATAAAAAACGCACTTCTTGAAAAGTGCGTCTAAAAAACAAAGATATTTATTTTTCCTCAAGGGTTGTAAAAAAAATTTTCTCTTAGATTAATGAACGGTATCTCCTTTATCTCGAGTTTCAATTGTCGGAGAATCACGATCAATGACGACATTTGTTTGGAGGGTAAAAGAAACACACAATAATGCTGCAAATAGGGAAAACCATATTTTTTTCAAGGTTGATCGACTCCTATGTTTGATAGATTTTGGCGTGCACGATAGGCGACGTTTAAATACTTCCACGCTAGTTCTTGTTCTCCTTTTTGTTTAAAAAACGTTGCTGCTTCCTCTGCGATCTCCTCAATTTCAAAGTTCAT # Questionable array : NO Score: 9.06 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.40,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [65.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 8 112854-113285 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABBNL010000005.1 Alkalihalobacillus clausii strain CSI08 NODE_5_length_317229_cov_17.978, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 112854 32 100.0 35 ................................ CAAAAAGGATCAGCGATGAAGCGTTTTGCCAGATA 112921 32 100.0 34 ................................ AACTAGCAAGGAAAAATGCAAAATCTCAATTACT 112987 32 100.0 34 ................................ TGTCTCTGACATTACTACCCCCCTGTTAGCTAGG 113053 32 100.0 34 ................................ ATACGCCCTTGGCGCGGCATGGCGCTTTTTGTTA 113119 32 96.9 36 ........C....................... CATTTTAGGAGTTGACGCAGCGAACATCCGTTTATC 113187 32 96.9 33 ............A................... CCGTCTACGCACCCAATCACCAGGGTCGCCATC CT,G [113193,113211] 113255 31 75.0 0 ...A....CC.G.C....A.....G..-.... | ========== ====== ====== ====== ================================ ==================================== ================== 7 32 95.5 34 GTCGCACTTTTTGTGAGTGCGTGGATTGAAAT # Left flank : GGAATATCCGAACCAAACCGATGCATGGAGTCTTGTTCATTTGGGGAAGGTCAGTTCATGGCTTTTATTAGTGATTGTTAGTTTTCTGATCGTCGCGACATTAAAACAGGTGAAGGGGAAAAGGCGCACTGGAGTAGATGCTAGTCAATCTTTATAAAAAGCAGTGCTTTAGTTTAGTAAGGAACTTTGCGTTTTTACGATTCTTATTATTTTGCCAGTGCAAACAGGTGCTTTTTTGAAGAAACCTATAGATGGCACAAGTATAATAGTAGTAAAGTTGAGGAGGCAACATTTACTTCGTATTATACGCAGTTCTTTTTGGTGCGAACCCCAAGCGCACATAAAATCCCTAGATCACCCGCACCAAAAAAGAGCTTAATTATGAAAAAATATGTATGAAAATGGCGAAATGTTGCTCGTTGTCCATGATATGATAAGTGAAAGAGCGGTTTTTACCTATTATTGATTGTTCTTCTTCCAATAATTAGGGGAATTTCGCA # Right flank : TAAAGGCGGGAGTAAGCCCCTCGCGCTTGCTCCCTTGTCACACGAGTGCGTCGCTAAGTTTCTAGCTATAGAATTCCGACCCCAGCTTGCATAAAAAATCCCCTTTTCTCGGAATCTCCCCAATTTCCCGCGCCCCAAAAATGTAGCCACATTTTTATTGCTCATAAAATTTTCCTAAATGGTAATATGTTTAAAAAGACTAGATACGGGGGGAGCGAAATTGGAAATTCGTACAGTGAAAGACTCTGACTACTTATGTAATTTCTCCACTAATTAATAAGTGGTGGGGTGGAAGAAAGATGTCTGATAAGTTGCCCAAATTATTTTTCGACCACTTTAGCAATACAAGTTTCATTGCTGAAAAGGATGAAAAACTTATTGGCTTTCTAATAGGATTCCTTTCTCAATCACATCAAAAAGTAGCCTATATACATTTTGTTGGAGTTCACCCTGATTACAGAAAGCAAAGCGTTGGCAAACATTTATACAATCAATTTTTT # Questionable array : NO Score: 9.04 # Score Detail : 1:0, 2:3, 3:3, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTTTTTGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: F [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.10,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 9 117203-117700 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABBNL010000005.1 Alkalihalobacillus clausii strain CSI08 NODE_5_length_317229_cov_17.978, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 117203 32 93.8 34 .........T.A.................... GATGACAGGGTTTAATGATACAAATATCCTCCCT 117269 32 93.8 35 .........T.A.................... ACCGAACTCGGTAAAGAATGAAACAATCGCTTTTC 117336 32 100.0 34 ................................ AACGATTTCCTCTTGATTGATTTTAATAATCATT 117402 32 100.0 34 ................................ TTCGCTCACGTCAGGCTTCAATGATTTTGACTGG 117468 32 100.0 34 ................................ ATTAAACAATATATCGTCGGAAATAATGCGGGTT 117534 32 100.0 37 ................................ TCAGCGCAAGTCTTTCCGTAGCCCCTACGCTGGCTAA 117603 32 100.0 34 ................................ AGGATTACCAGTCTACAAAAGATTGGACGCTTGA 117669 32 84.4 0 ........TT.A........A..........C | ========== ====== ====== ====== ================================ ===================================== ================== 8 32 96.5 35 GTCGCACTCCTTGTGAGTGCGTGGATTGAAAT # Left flank : TATCTCTCCTTTCAAATCTTAACATTCTAATGAATTTTAGCAGCAGTCAATGAGAATGAATAGTCTATAATAACTTGTGTCTATATGCTATAATTAATCTAGGGAAAGTGTAACTTTTTTAACATAGCTAACCGTACTGTAAACGGGTGACCCGTTTCAACCTCTAGAAAGCAATTCATACCTCCTTTCGTCCACAACGAATATCGTTAAAACCCGATTTTAAGAACAGCCTTGATGAACAAGCGCATGTAAAAGAGCAGAAGAGAATGACATTGATTGCCCTTCTTAGTATTTAAAAGAATAGAAGTGGTGTTTTTTTGGTGCGAACCCTAAGCGCACATAAAACCCCTAGATCACCCGCACCAAAAAAGAGCCTAATTATGAAAAAGCATGTGTAAAAATGGTGAAATGTTGTCTGTGTGCCATGATAGAATAAAGGAAAAGAGCGGCTTTTTCCTATTATTGATTGTTTTACTTCCAATAATTACGGGGATTTCGCT # Right flank : CACGCTGCTGCCGTAGCAAATGAATTTAGCTCAATGGAAGAAAGAGGACGAATTATCAATTTTTTCACTTCTGTCGTCGGTCAAATGTTTCCAACGTATAGTGGGTACGCTGATTGGCTTGAATGCTGGCGCCTTATTGTTTGTTGTTGTCGCGTTTACGTTTCTGGCGGTTTCGTCATTCCTGTTTGGCTGCAACCAGCGATAGTCATTTCCGACAAGGGCACATCTTCTGGTTATGGCGTTTTTATTTTAAAATCGACACCGAGGCACTGGTTTTTACCGCTTGGCGCTAACCAATGCTGACGCCTTTCATTCAATAAAAATCATCTTTAGTAAAGCCATTAATCAAATCGATCAATCTAGATAAATGGATTGTATGCGCGTCTTCTTTACGGGTACAAAGGTAAACAGGCCGTTTAATCTCGATATCTTTTACAAGAACTTTGCCTAGTTCATTTCGGTGAATATGGTCTTTGACGGCAAGTGAGGGGGCAAGCATC # Questionable array : NO Score: 9.08 # Score Detail : 1:0, 2:3, 3:3, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCTTGTGAGTGCGTGGATTGAAAT # Alternate repeat : GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,10] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.50,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 10 130336-130500 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABBNL010000005.1 Alkalihalobacillus clausii strain CSI08 NODE_5_length_317229_cov_17.978, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 130336 32 100.0 34 ................................ AGCAGGGAGAACCTTTTCAATCGATATTCCCATA 130402 32 100.0 35 ................................ ATAATATATTCCCACCAATCTGTATCATTGACTAT 130469 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ =================================== ================== 3 32 100.0 35 GTCGCACTCTTTGTGAGTGCGTGGATTGAAAT # Left flank : TATTTTTCCACTTGTCAAACGATAAACGGAATCGTTCAGGAAACCTATTTGCTTCGCAATCGTAGCAACTAAGAAGATAGAAAAGCGCTTTACATAAGCTCGGCAAGAATGGCACCGGAAGAAGCGGAAACGGTTTTCAGGCACTCGCCTAGACAGCGTTTTAATCAGGCGAGAATCAGGCCCAAATTCACACATATATCAAACAATAATGGCGAAACAGATACACAACCTCATGTGGGGAAGAAGAAATGGTTAGAGGAGCTCCATCAATCGTTTCCTTGTGAGCATTCAGTATGATTAAAGAAGATCAAAAAACACTTGGTGCGAACCCCAAGCGCACATAAAATCCCTAGATCACCCGCACCAAAAAAGAGCTTAAATATGAAATAATATGTGTAATGATGGTAAAATGCTGTCTGTATGCCATGATAGAATAAAAGAAAGGAGCGGCATTTTCCTATACTTGTTGTTTTCCTGTCAATAAATAGGGGAATTTCGCT # Right flank : TCAACAACAGGTCAAGTTGGGCATGGTACTGTCTTTGTCGCACTCTTCGTAAGTGCGTGCTCGTTCGTATGCAACCTAATAACCAGTAGGTTATGGACGTAAGGCATTTGGGGGAGGTGGATGTGCCATAAAACGAAAACCAGTAGTTTTAGGTGTAGGCGGGCTTCTAGTAATTGGTATGGCTGTAAGTGCAGTCATCTTATTGAATGCGGACAAGGATTCTGTGCCAGGGAGAACCCAATTAAAAGAGAATGAAAGAGACTCGAGTGATTATTGGACCGCAGACAACATGAAAAAAGCTGTTCCGGGGGCAGGAATGGAGGACTAACGCCTGCTCCTCGAACAGCTTTTGCTAGCTAGTTGGTGTTTGGTTTCGTTCGTTATTTTTTTCTGAACTGGTGTTTAAAACGGTTAAACGGGGTGAAGTATGAAACGGCGTAGTCTAAGTTAATAAGCTCGCTGTATTCAAAGACGCGCCCGTCGTTAAGAATGCCGCGATT # Questionable array : NO Score: 8.67 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTTTGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.55%AT] # Reference repeat match prediction: F [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.40,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 11 195087-195385 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABBNL010000005.1 Alkalihalobacillus clausii strain CSI08 NODE_5_length_317229_cov_17.978, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 195087 32 100.0 34 ................................ TTAAAATGTGGCGTCCTAGCGGCGCCTTATACAC 195153 32 100.0 36 ................................ GCTAGTTTAGCTCGCTCAGACAGAGATAGAAATACG 195221 32 100.0 35 ................................ GAATGCTGAAAAGTAGTAATTCCAAGCGGGTAATC 195288 32 96.9 33 ........................G....... TCCTTCTGAGGCTGAACAGCTGGCGTCTGCCAT 195353 32 93.8 0 ..............................TC | A [195379] ========== ====== ====== ====== ================================ ==================================== ================== 5 32 98.1 35 GTCGCACTCTTTGTGAGTGCGTGGATTGAAAT # Left flank : TTCCGCGGTGAATAAGATAATGAATGGTGTCGGCATCGTTCTTATTTCAGGCTTGCTTAACTATCCATTGACGTACCTGCTAGGGACTGAAAAATCGGATGGCATCCTTGTTTTTAGCATCATGGCTGCAGTCGGGTTGTTTTTACTAAGTTCTTGGCTATTTGAAATTTTTCTAGGCGCTGTTTCCTTTGATGCACTACAAGGGATGAATCTAGACAAGCTGTTCTCTGGAAGTTTTTTAGCGGTCACGTTTGTGCTATTCATGGCCTCCTACGTAATTGCACTGCAAGTGTATAAAAGGAAAGAATTCTAAGCGAGTAGGTGCGAACCCCAAGCGCACATGAAATCCCAGGGAGGTTCGCACCAAAATGCACTTTTAATATGTAATAATGTGTGTAAAAATGAATTAATGTGAGTGGGACCACATGGTAAAATAGGAGAGAAAAACGAAATTCACGCTTTTTTGGATGTTTCATTCCATAAATTCGTTGAAATTCGCT # Right flank : CGCGCTCTTCTCAGCTGCCAAACGTTGGTAGTCGCACTCTTCATGCGTGCACACATGAAGAGAAGAACGCCCGGTTAGACTGAATCACCACCATCTATACAGCAGCCAAAACCCTTATTTTACAGCGTTTTGGTTTGTTTTGTTGGGCTGCTTGACAAGGTATGGCTATGTTCTGTAAAGTAGTTATCACACTAACTACTTAGAGGTGCTGATATGGAAGAGGCAGTCATTCAGGAGCTGCAAAAGCACGGTTTTTCCAAATATGAGTCAAAAGCGTATATTGGGTTATTAAAGGCGCCAGCGATTACAGGTTATGAATTAAGCAAGCGCTCAGGCGTGCCTCGGTCGATGATTTATGAAGTGCTTGGCAAGTTGCTCGATAAAGGGGCTGTGCATACCGTGCCCGCTGACCCAATTGTCTATAAGCCAGTGGATCCGCGGCAGCTATTGACGAAAATGAGGGAAGATCTTGATGCTTCTTTGACCTCATTAGAGGATTC # Questionable array : NO Score: 8.96 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTTTGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.40,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //