Array 1 276723-274912 **** Predicted by CRISPRDetect 2.4 *** >NZ_QQJN01000001.1 Neisseria lactamica strain M37146 M37146_HUY4067A188_cleaned_ctg_7091, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 276722 32 100.0 34 ................................ TAGTATCTACACACTGGACAAAAAAGTTTATGAC 276656 32 100.0 34 ................................ AGGTCGAGTACCTTGACAGGGACAACGATTACAA 276590 32 100.0 33 ................................ ACAGTGAATGGGCGCGTAACCGAAAACAGCCAA 276525 32 100.0 34 ................................ AAGATTTGGCAGAAGTGCCGGCGTATTCCTACAC 276459 32 100.0 33 ................................ CTGAATTAATTTTTTGTAACGTTTTTTCGCCAA 276394 32 100.0 36 ................................ ACTGTTTACGATGTATCGACAACCGACCTGTCAGAA 276326 32 100.0 34 ................................ CGATGTGATTCGGGCGGTTTGGCAAATTATCACG 276260 32 100.0 36 ................................ TTGTCCGTATTTCTCTGTCTGTATCAGGTTGCACAG 276192 32 100.0 34 ................................ AACATCGCCGCATCGTATCCGCGCCGGTATTGCG 276126 32 100.0 34 ................................ TCTTGTTCTTATTGGAGAATTTTCAAAAAATCAG 276060 32 100.0 34 ................................ AGTACCTTTAGGGATTTGTTTTTATTTCGCTCCC 275994 32 100.0 34 ................................ AAATCGGGGGCGGGGTCGGTGTTGGGGCGCGTGC 275928 32 100.0 33 ................................ AGCGGCAAACCGAAAGTTTCATACTCTTTCGCG 275863 32 100.0 33 ................................ AGATTATAGGGGGCATAAATTCAAGTCGGTTAA 275798 32 100.0 34 ................................ TTGTGCGTACCGACAAAAGCACGAGATGCATTCA 275732 32 100.0 33 ................................ TTGACATATCGGATTTAAATTTAAAAGACCCTG 275667 32 100.0 33 ................................ GACGCATCCCGCGTCGTCCCCACCGCCGACGAA 275602 32 100.0 33 ................................ CAAGACTGGATATTTGAAGAGGTTATCCCTCAA 275537 32 100.0 34 ................................ AATAGATACAATCGAGCATCGGGGCGACGCATAA 275471 32 100.0 35 ................................ AAGCATTGGGAAATGCGGCTGACGGATTTTTTTCA 275404 32 100.0 33 ................................ CTGGGCATTAACCTCCACTATCTACCAATCAAG 275339 32 100.0 35 ................................ TGTACCCCCCCTGTTAGATAAGGGGGGAAGATTTG 275272 32 100.0 33 ................................ AGAACAACAAAGGAGGATTTGAACAATTAATAA 275207 32 100.0 34 ................................ TCTCAATTGACTTGCCGCTTGTGGATATGCGGTC 275141 32 100.0 35 ................................ CGAAAACGGTATTAAAAACTATGTCTGCTACGGAG 275074 32 100.0 34 ................................ CAGATTGGAAGTGCCTTAGGTTATAAAAATCCAT 275008 32 96.9 33 ......A......................... ATTAAAAAACTTTTTTCGCGGTATGCTTCGGGT 274943 32 93.8 0 ......................A.A....... | ========== ====== ====== ====== ================================ ==================================== ================== 28 32 99.7 34 TCAGCCGCCTCTAGGCGGCTGTGTGTTGAAAC # Left flank : CATGGAGAGGCAAGAAAATGCTGATGTTGATAACTTATGATATTTCGCTGGAAAATGCCGAAGGGCAGGCAAGGCTGCGGCGCGTAGCGAAACTGTGCCAAGACTACGGCGTGCGCGTGCAGTATTCCGTGTTCGAATGCGACATCGCACCCGACCAATGGGTAGTTTTAAAAGACAAACTTTTAAAAACCTACAACCCCGAAACAGACAGCCTGCGCTTTTACCACCTGGGCAGCAAATGGCGGCGCAAAGTGGAGCATCACGGCGCAAAACCGGCGGTCGATATATTTAAGGACACGCTGATTGTGTGAATCGCCAACCTGTTGTTCCCATAAAAATGCGGCAGGGTTGGCGAATCTGGGTTGTTCTTTAACAATCAGGATATTGCAAATGTGGATATGGCGGATAAGGCTGTGCTATACTCATGTTTGTGCTTTTTTCGGGAGTTTGGCGAAGTCGGGGCTGCGAAGCCTGATGTAGTAAGGCTTTCGGAAGAGGCT # Right flank : GGCGCGGACGACATCCGTTTCCTGCGTGAGTAGGGTAAAGGACAATCTAAATTCCCCCGGCAGCTTAAAATCTTGTCGGGTCTGCACAAAAATGCCGTCTGAACAGGTTTCAGACGGCATTTTGTTTCAATCGGGAATATCTTTGTTAAAAAACGGCTTGATGTTATCTGCACATATTAATATAATGATAATTATTATTAATTTAAATAGAGAAAAAGTAGAGATGTGTAAATTGAATTATTACGGTATTGCCTTGTTGCCGTTGATGCTGGCAGCCTGCGGCGGTAATTTCGGCGTGCAGCCTGTTGCCAAACCAACGCCAACCCCGTCAGATTCCAAACCGTCCAAACCTGAGGACGTTCCTACTCCGCCCCCTGCCAAACCTTCTATAGAAACCACGCCGGTCAACCGGCCCGCCGTCGGTGCGGCAATGCGGCTGTTGAGACGGAATACTGCTTTTCATCGTGAAGATGGCACGGCAATTCCCGATAGCAAACAAG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCAGCCGCCTCTAGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched TCAGCCGCCTCTAGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.20,-5.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //