Array 1 161961-162378 **** Predicted by CRISPRDetect 2.4 *** >NZ_MJTB01000016.1 Listeria monocytogenes strain CFSAN002240 PROKKA_contig000016, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 161961 29 100.0 34 ............................. TTTCCCCAACTGCGCCCTGTTTTAATTGCTTAAC 162024 29 100.0 37 ............................. ATATACTGGCAAGTTTATCTTGATGTTTCTGACTATC 162090 29 100.0 35 ............................. CGTATATTTAATTTTCGGCATATAATCCCATCAAT 162154 29 100.0 37 ............................. CTGTTCATTTATTTTTCAGTCCTATGTTCATTGCCTC 162220 29 100.0 36 ............................. CCGGAAGATTTAGCAGTGGATCCATTTCCGTTTGAA 162285 29 100.0 37 ............................. AATCGTCACGATGGGAAAGTCGTTGATAGCGCGCCAC 162351 28 79.3 0 ......A......-..CAT....A..... | ========== ====== ====== ====== ============================= ===================================== ================== 7 29 97.0 36 GTTTTAGTTACTTAATGTGAAATGTAAAT # Left flank : GGCGTCCGTGCCACTACTTCAGCTGACATTTTACTTGAAAAAGGTGCCGTAGAAGTTATCGCTTGCGCAACCCACTCCGTCATGGCTGGAAACGCAACCGAACGCTTACAAAACTCCAATATCAAAGAAGTCATCACATCCGACTCCATCGATCTTCCAGAAGACAAGCAATTCGACAAACTAACAACCATCTCCATCGGACGAATCTTAGGCCGCGCAATCGAAGGCGTACAAGAAAACCGCTCGTTGCATCCGTTGTTTTAAAGAATAAGCAGGAAACAGTAACTTAGTAGAGTTGCTGTTTTTTTGTTATCTGTCGACCTTGAGTAGTGTGAAAAATACCGGAGACCGACAGAAAGTTGTAAGTGGCTAGGGGAAGGGAAGCTTGGCGGTATTTGCTTGGGAAAATTTTCCGGATAAGAGGAGATTTTAGATGTTTTTGGTAGGTCGACAGAAATAGCTCTTTGAGGTAAGATGGGAGTAAGAAGAAAAGTTAGCGG # Right flank : TCCCATTCAGATTTAACTCCATCACCATCCATCAAAACCAAAAAAGCGTGACTGCCAAACTCGCAGTCACGCTTTTTCTCAATCATTAAACTCTTTCAAAACATCCTCTTTAATTTCAGTATAATTGGTTACTTCCTCTTGCTCCTCGGAAATGAAATTATATGCTTCCACTTCTCCCAAATTCTCAAAATCGGTAAGAGTAGCGTCTGTTTCTTTCAAGTCTTCATTAAATTTGCCGTAGCCCATGCTGATAATCGAACTTAGTTTTTCGCTGTCATGTCCGCCGCGTAAAAATAATGTGTATTCTTGCTCTTGCTCAAGCGCGATATAGTTTTCAATGGATTCATACGCACCTTCATTTAAATACCAAGGTTCTGAAACGTCAATTTTGTCGCCTTTTTTGAAAGTGCCTTTGTAAGTTTCTAAAACTTCGACTTCACTTATAGTGCTGCTATATTCCATTTTTTCTTTATCGTAATCGCCAATTTTCTTATTTTTCA # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTTACTTAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 177992-179773 **** Predicted by CRISPRDetect 2.4 *** >NZ_MJTB01000016.1 Listeria monocytogenes strain CFSAN002240 PROKKA_contig000016, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 177992 29 100.0 34 ............................. TTTTTTTGGCTTTTTCTTTAGACACTTTTAACTT 178055 29 100.0 35 ............................. TTGTTTGGAAAACGTGCGCGCCAGCCTTCTTTTTT 178119 29 100.0 36 ............................. TGTATTCTTATAATGAGCTTTGCAAAATGGTTCCCC 178184 29 100.0 37 ............................. TCACCAATTCATGTCCTACTAGCTTCGGACGTTTCAT 178250 29 100.0 35 ............................. ACGGTTGAATAAAACGAATAATAAACTGCATGTAT 178314 29 100.0 34 ............................. AAGCTAGTCGCGAACAATTAAGCGCGTTAGCCCC 178377 29 100.0 36 ............................. CAACGCTTTTTATTGATATGATACTATATGACATTA 178442 29 100.0 37 ............................. TGCTTCTTGCTGTTCTTTCTCTTTTTTAAGATTTCAT 178508 29 100.0 36 ............................. GTCTTTTAGCCTGCTTTTGGTTAAAGTGGGGTTGTC 178573 29 100.0 36 ............................. TACTTAGCACCTACAAGACTAGCATCACCCTGCGCA 178638 29 100.0 37 ............................. ATCTACAGAACTCTCCGACTCTTGCACTTCCGTGATA 178704 29 100.0 37 ............................. ATTGGACCGGAAACTGCAGGCGACTTACTTAATTATC 178770 29 100.0 37 ............................. ACAGTCAAATGATGATGACCAACTTCCTCTGCCAAAG 178836 29 100.0 38 ............................. TACATTAGTGTATCGAAATCCGTATCGAAAATTTCTAC 178903 29 100.0 36 ............................. AAAATTGATCATCAGGTAAACTAGCAACATCAAGTT 178968 29 100.0 36 ............................. GGAAACGCCGTCTTCCGTCGTTCTAAATTTAAAACT 179033 29 100.0 34 ............................. TATAAATTAAGGATAAGGAGTGTTTTTGGATGGC 179096 29 100.0 35 ............................. CTTTCTGGAGCAACTTTTAAAGTGAAAGACAGTGA 179160 29 100.0 36 ............................. TATCTTTATCTGTAGCTAGTTTGAAATCATCTTCAT 179225 29 100.0 37 ............................. GAAAGTAAAGAAATCAAGCCTAAATTTGTTTTCCGGT 179291 29 100.0 36 ............................. GGTTTTAACTTCTAGGTTATTTTGTGCATTTTTTGG 179356 29 100.0 34 ............................. TATTCTTTTAAAGTTGGCGGTAGTATGGTAACTA 179419 29 100.0 36 ............................. ATGTCTGCGTGCCCCAGTCTCTCTTGGATTACTTTG 179484 29 100.0 36 ............................. TTTTCAATGTGCGAGTATGCTCCTCTGGAAATTCCT 179549 29 100.0 37 ............................. ATCTTGAACCGCTCCCCATGCTTTTTTAGCGCCATCA 179615 29 100.0 35 ............................. TAACAATGAAAAACGGATTTACAAAATTAGCGTCC 179679 29 100.0 36 ............................. ACTAACAAAGCACCTGTAAAAGCTAATGCAATCGGA 179744 29 93.1 0 .......................A....C | C [179767] ========== ====== ====== ====== ============================= ====================================== ================== 28 29 99.8 36 GTTTTAACTACTTATTATGAAATGTAAAT # Left flank : CATTTAAAATTTGGTGGTGAAGATATGTATGTAATTTTAATTTATGATATTTCAATCGAAAATGGTGGAGCAAAAGTCTGGAGAAATGTATTTAAGATTTGTAAAAAGTACTTAACTCATGTTCAAAAATCAGTTTTTGAAGGTGAAATAACTCCAGCACTTTTAGTTAAGTTAAGGATGGAGTTAGATAAGTATATTCGAGATGATCAAGATTCAGTAATTGTTTTTTCTAGTAGACAACAAAGATGGCTAGAAAAAGAATTTTGGGGATTAACGGATGAAAAGACTTCTAATTTCTTTTGATGTTCTCGGTCTGTCGACCTCTAATAGCGTAAAATATAGTGGGGTTCGACAGATTTAGGGAAATCATTGGGGTAGAATGTCTTTAAAGGTTTTTAGCAAAAATCCGAAGGGATAAGTTATGATTTTCACCCGATTTTTAAGAGGTCGACAAATATAGTACCCTGAGTTATGATGGGAGTAGGCAGAAAATAGAGCGG # Right flank : CTTCCTCTTATAATTTAAACCCCAAAAATAAAAAAGGCCAGGACCTAAATCCAAGCCTTTTCCTACACTCCTCTAAACCAACAAAACCGCAACCAACGCCAAAACCGCCGGCAAGCCCTGTTTCACCAAAATTCCCTTAGAAGAAGTCGCTCCGCCAAACAGCGCCGCCACAACCACACAACTCAAAAAGAAAATCTGCACAGTTTCCGCAAACTCTGCCCCCGCGAAAAATAATCCCCACACAAGCCCTGCCGCAAGAAAGCCATTATAAAGCCCTTGATTCGCAAATAGCGTCTGTACTTTCTTATTCGCAAGGAGTTCTTTCTCCACACCAAATGTCTTGGCTGCGAGTTTGGTATTGGCGAAAAACATTTCTAAAATCATTATATAAATATGCTCGATCATTACGATGAAGGTTAAAATAAATGCTAAAATGGCCATAAAAAATCCCTCTTTTCTACTTCGAAGTATAGCATAGCTTGTAAATTTTTCGTAAAAAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTAACTACTTATTATGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //