Array 1 9108-6140 **** Predicted by CRISPRDetect 2.4 *** >NZ_MPKF01000025.1 Vibrio navarrensis strain VN-0506 NODE_25, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 9107 28 100.0 32 ............................ TGCGGACTGTATACACGCGGTGGCGACCCCAT 9047 28 100.0 32 ............................ CTGAGCGTAAACTTGAGCTAATACCGACATAT 8987 28 100.0 32 ............................ CGACCGCTGGCGTTAAGTGCTGGGTAAGCGAC 8927 28 100.0 32 ............................ AGGCAATCCTGCCGCAGCAATCTCCGACCCTG 8867 28 100.0 32 ............................ TTCGGCAGCGAAAACAAGGCACTGATGGCGAT 8807 28 100.0 32 ............................ TCAGCGCCTTTCGCTTCGATATATACATCTAC 8747 28 100.0 32 ............................ GCATACTAAACGAAAAGAAGTAAGAGATTGAC 8687 28 100.0 32 ............................ TTACAAAGATATTTATCAGTTAGCTAAAGAGC 8627 28 100.0 32 ............................ GCTTGTTGCTACCGTGCTGCAAGGCACTGTTA 8567 28 100.0 32 ............................ TCAGTGGTATAACGGTCTTGACCTTGCTGATC 8507 28 100.0 32 ............................ TGATTGCTTTAGAATTCCATTAACGTAAAAGT 8447 28 100.0 32 ............................ TTGTGCTACTACGGAAGCGCTGTAGTGCCATT 8387 28 100.0 32 ............................ TAAAAGAAGCAGCAAGATTTTTGCCAAAAGGT 8327 28 100.0 31 ............................ GACATGATTCCTGTCTGCATAGCATTTGCAG 8268 28 100.0 32 ............................ TTTTTCGGTAATCTTATATCGGCCATCGTCTT 8208 28 100.0 32 ............................ TGTTAATGGGTTAAACTGAGCGATACCCATGA 8148 28 100.0 32 ............................ TATTGCTCTGGTTAGTAATCCAAATTGTCTAC 8088 28 100.0 32 ............................ TTTTATCGGGAATCGTGCCTACGTCATTGGAC 8028 28 100.0 32 ............................ TTTAGCAATCAAAACCCCTCGCAGCAATCGAA 7968 28 100.0 32 ............................ TCTAGCGCGCTCGGATGGGCTGGATTTGCCCT 7908 28 100.0 32 ............................ TGCCAACTCTCCGACGTAATCCCCTAATGGGT 7848 28 100.0 32 ............................ TTTGATGAAGCGCAAAAAGAGCAAACCGCTAC 7788 28 100.0 32 ............................ AAAAATCCATTTGCGTTATTTAAAAAAATTCA 7728 28 100.0 32 ............................ TCTCAAACTAACCATCGTAGACAATTGAATTC 7668 28 100.0 32 ............................ TTCAGCACACCAATCGCCTTATGAATGTGTTT 7608 28 100.0 32 ............................ TGTAATTTGCTTTTTACCGTGGAATACACGTA 7548 28 100.0 32 ............................ ATACTGCCCGACTTGTAAAAGTCACAGTGATT 7488 28 100.0 32 ............................ TCCGCTCAGCGCCGCTCCAACAGATTCGAGAG 7428 28 100.0 32 ............................ TTGAGCTGACCTACCGCATCGTGTTTATGGCC 7368 28 100.0 32 ............................ TTATCAGGAACGAGTGTTGCCAGCTCGTCGAT 7308 28 100.0 32 ............................ CGAACCCAGACCCAACAGACCCAAATCCCGAC 7248 28 100.0 32 ............................ TATAAGTCATCTTATGCAGTCTGGTTTGAAAT 7188 28 100.0 32 ............................ ACAAACGCCACGCCACGCGCCGCAAACGGTAG 7128 28 100.0 33 ............................ AGCCGAGATGTGAGGCGTAGAGAAAGCATCTTT 7067 28 100.0 32 ............................ GTTCCATAATTTGGGCGTACCACCGATAAGAA 7007 28 100.0 32 ............................ ATTGAAGCTTACTACAGAAAGTTAAATGTAAT 6947 28 100.0 32 ............................ TTATCCAAGCATACGGCAAACTACCTGAGTAA 6887 28 100.0 32 ............................ GAGAGAGACTAGTTTTGGATAGATTTCTTTTG 6827 28 100.0 32 ............................ TTAATATCAATAGAGACTTCTTTGTTGTCTAT 6767 28 100.0 32 ............................ TGCCGTAAGCTGGAGTCCGTTAGTGCTGGCGT 6707 28 100.0 32 ............................ TTTGACTTGTTGAGTAACCGTTTTTTGCTTTT 6647 28 100.0 32 ............................ CTGTCGCTTTCAACTCAGCATGCTTATCAAAA 6587 28 100.0 32 ............................ ATATCGAGATGTGGCTGGTGTTCTTACTGTCT 6527 28 100.0 32 ............................ AATTATGCGCGCGTCGGGTCAAACCTTCGTCA 6467 28 100.0 32 ............................ CACACCAACAGATGCTGCTAGGGCAATTTCAG 6407 28 100.0 32 ............................ TTGAGCTGACCTACCGCATCGTGTTTATGGCC 6347 28 100.0 32 ............................ TTATCAGGAACGAGTGTTGCCAGCTCGTCGAT 6287 28 100.0 32 ............................ AGTTTGCGCCGGGCTAACTGCGTTTTACCGCT 6227 28 100.0 32 ............................ ATTAGTACAACTCCGACAAAGAATCGGCTAAC 6167 28 96.4 0 .......................G.... | ========== ====== ====== ====== ============================ ================================= ================== 50 28 99.9 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GAGCGCATTGCATGATTTGCAGGGGTTAAATTGGTTAGGACCTTTGGCAGGATATTGCAAGATTACTACGGTTACTCATGTGCCAGACCAAGTGGAATATCGCATCATTTCAGTTAAACGCAGTAATTTAAGCAAAGCAAAATTAGCGCGTTTAATTGCTAGAGGTAGCATAGATAAAGATGGTGAGAAACGTTACAAAGTAAAAATGCTTCGCCAAGGGTTTGATAATCCATACCTTGATCTGTCTAGCAGTTCAACAGGGCAGGTGTACCGAAAATTCTTTGAGTTTAGTGATATTCAAGCTGAGCCAGTTGATGGTGAGTTTGATAGTTATGGTCTAAGCAAAACAGCAACTGTACCTTGGTTTTAACCCTTTATTTTTGCTCTTTAAAAATGTGCTTTTAAAACAAATGGTTGCAACGGGTTGTTTTTAACAAGGTAAAAAGATGATTTTTATCCTAACATTCTGTTGCAGCTTATTTTTATCGGTTTATTCTATT # Right flank : ACAAAAACGCCACGAGCAAAGCTGGTGGCGTTAGCATCAATTCTAATCTAATCATAGCAATCGAGCATTTTAGATGCCCCCGTACCCCAAGCCGTACCCAGAGCGATTTTTGCTACAATTAAAAACCGTTTAAACCTTTATTTAATGCGCTCTAACATCACACCCGCTTCCATGTGGTGGGTGTAAGGGAACTGGTCAAACAGAGCGAAACGGGTAATGGTGTGGGTTTCGCTCAGAATTTCGAGGTTCTCGAGCAGGGTATCTGGGTTGCACGAAATGTACAAAATGCGCTCATAGCCTTGCACCATTTTACAGGTGTCTACATCCATACCTGCGCGTGGAGGGTCGACAAAAATCGTATTACAGTTGTAGCTCTTCAAATCTACGCCCGCATCTTTAAGGCGGCGAAACTCGCGTTTGCCTTCCATCGCTTCGGTGAATTCTTCCGCTGACATACGGATGATCTGCACGTTCCCAATTTTGTTGGCGGCAATGTTGTA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 2572-2364 **** Predicted by CRISPRDetect 2.4 *** >NZ_MPKF01000009.1 Vibrio navarrensis strain VN-0506 NODE_9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 2571 28 100.0 32 ............................ ACTACCCAGAGCTGTGCTGTAGGTCATTCTCT 2511 28 100.0 32 ............................ GAAGCCAATCAACGTGCGAAGGACGCCGCATT 2451 28 100.0 32 ............................ TTGAAGTGCGACTACCCAAATACGCTGTAGAC 2391 28 89.3 0 .........C..........C......T | ========== ====== ====== ====== ============================ ================================ ================== 4 28 97.3 32 GTGCCCTGCTGCATAGGCAGTCAAGAAA # Left flank : TCATTGATGGTTAATGAAGGTTTGTTTGAGATCTCCAGTGTTTATGAGGTGCCAGATACTTCCGCAGAAGTAAGGTTTGTTCGCAACCAAACGATTAACAAGAGCTTTTTAGGCTCGAAGAAACGGCGAATTAAACGTAGCATGGTGAGAGCCGAGCTTTCTGGGGCTGAACAACGATTACCAGTCACTAATGAAGAGCGTGTCGTCGATAGCTTCCATCGAATTCCCATGTCTAGCGGCTCCTCAAAGCAGGATTTTATTCTGTTTATTCAAAAGGAATTCGTAGATGAGCGTGCTGAATGTGGCTTTAATAGCTACGGTTTAGCAACCAATCAAGAAAGAAAAGGCACGGTACCTGAGTTACGTTTTTAACCTTTTTTCTAAAGCTCTTTTTTAGAGAAGTAAAAACAAGTGCTTACAGAAGTAAGAAGAAAAAGGGCATTTTGGTGAATTGTGATTTTAAGCACGGGGAATCAGAAGGTTAGAGGCTATATTTTATA # Right flank : AGGTCAGAAAGAAAGCAACCTACCTACCTGCTGAACAAGCAGTTAATAATCAAAACCATCAAGTTTTCTCTTGGTGGTTTTTTGTTTAAAAGGCTCCCCATGTATTTAAAAAGACTTGAATCTATTGATGTTAATTTCAATCACTATGAGGTAGGACTTGAACGATATGTTAGGTGTACTTGGGGCCTGAACATGTATAGGCATCATGTGTTTCGTGCAAACCTGCCAGATACATTTGTGTTGGAGATCAATCGAATCAATGAATTTTTGGGTATTGCGGTAGAAACCATTGATTAGCCAATGGGTAAATAGTGAACGGTTGCATATTTCGGAGCATTCCGATCAGTCATTTCCGGAATCGAGCGATCGCAATCACCGAAATACGCAACGGTTACATAAAATATTCCGAACGAGCTACGACAACTGTTCTATCACTCATCAAGGAAAATGTGCTGTGGCAGCATATAAATAGAAAAATTAGAAGCATAGGATATGTTTCT # Questionable array : NO Score: 2.72 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCCCTGCTGCATAGGCAGTCAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.80,-5.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA //