Array 1 391096-393178 **** Predicted by CRISPRDetect 2.4 *** >NZ_MJSS01000020.1 Listeria monocytogenes strain BCW_2364 PROKKA_contig000020, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 391096 36 100.0 30 .................................... GCAATAGACCAGTTAGGTGTCACAGGTGCG 391162 36 100.0 30 .................................... GATAGTAGTATAATAACTGTGCTAATATGG 391228 36 100.0 30 .................................... TTCGTACCATAGTATACACATGCAGGGGCG 391294 36 100.0 30 .................................... CATATAGATGTTTCCTTTCTACTCGTATAT 391360 36 100.0 30 .................................... AAATATTATTCAATGCTGTAACTGTAAAAG 391426 36 100.0 30 .................................... TACTTTTATTGTCTGCTAAGAATACTACTA 391492 36 100.0 30 .................................... ATTGTACAAATTCCAAGTAACTCATCATTA 391558 36 100.0 30 .................................... TTTTTCACGTTTGTACTGTCTCTCCTCGTA 391624 36 100.0 30 .................................... TAACTTTAGATACTGCTAAAGAATTAGCAA 391690 36 100.0 30 .................................... TGTCTGAATGTAGTTAATATCTTCAACTTG 391756 36 100.0 30 .................................... CTTCAGTTTCACCTGTGAATACGCCGTTTA 391822 36 100.0 30 .................................... GCGCTTCAGTTTCAGCATTGGTCTTCTTAG 391888 36 100.0 31 .................................... TCTCTTGCATTTGGTTCTGAATAATCTCGTA 391955 36 100.0 30 .................................... AGAGCAATGTAGTCATTCAGCCAATGCCCT 392021 36 100.0 30 .................................... ATATGGGGGCTTATTGTATGGCTAATATAC 392087 36 100.0 30 .................................... ACGGGGCATTTAATGTTGGCAAGCGCAATT 392153 36 100.0 30 .................................... TCCTCAGATAAGGTTTAGTACGCAAGACTC 392219 36 100.0 30 .................................... TCCACTTCGACGCTGGACGGGCTCTCCTCA 392285 36 100.0 30 .................................... CAATGCTTGGGGCTATGATGGCATGGATAA 392351 36 100.0 30 .................................... CTCTTTTCGATATTCCGGAAGAGGTACTCC 392417 36 100.0 30 .................................... CTTTTGTGTCTTCGGTAGCTTTGTCCATTA 392483 36 100.0 30 .................................... CCAGAGTCGCTTTTTCTTCCGGCCAGTCTG 392549 36 100.0 30 .................................... GTGTGTTATCTATTTGTAGCGTGGGTGTAT 392615 36 100.0 30 .................................... ATATACAATGTCTAAGCTTAATCTTTCGGT 392681 36 100.0 30 .................................... GAAATAATATTGATAATATCGCTCTTGCTA 392747 36 100.0 30 .................................... AGTATTTATTATCTCTATTACTTTTGTATA 392813 36 100.0 30 .................................... CGTATTCAAAAGTATATCCGCTAGCCTCAA 392879 36 100.0 30 .................................... TAGGTTTAGGGAGTAAATTAGCTCCTTTGG 392945 36 100.0 30 .................................... GGTAAAACAAGCATCGGCGAAGCAGTAACA 393011 36 100.0 30 .................................... TCCTAAATCTGAAAACAAAAACTACGAGTT 393077 36 100.0 30 .................................... TATTGGTGCCGCGATTAAAGTGTTTGACTT 393143 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 32 36 100.0 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCGACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAACTGGATTTAGAAGAAGATGAAATAACGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGACAGTATATCTCTTTATATCAAGTCAAAGTACTATTTATTGAACCTAGAAAAATAAAAGGATCTCCGCAAGTTACTTTAGATTCTGATTATTTTTTACATGTGGAAAATAGTGTATAAGGTAACTGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAG # Right flank : | # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.30,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [56.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 50552-51880 **** Predicted by CRISPRDetect 2.4 *** >NZ_MJSS01000031.1 Listeria monocytogenes strain BCW_2364 PROKKA_contig000031, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 50552 29 100.0 37 ............................. CAATGCTTAAACCGAGAGCATCAAATTGTTCCCATGC 50618 29 100.0 36 ............................. ATTACAGTACAAGCAAGGGTTATTGAGTTAAATATT 50683 29 100.0 35 ............................. ATTAATGATAAGAGCGGAAAGAAAACTTTCAAGGG 50747 29 100.0 37 ............................. TCCCCCTTAAGATACAAACTCGATTTGACAGGTGCAG 50813 29 100.0 36 ............................. TCGTTTATGACCTTATGAAAGAGTTAACACCTCGAC ACT [50825] 50881 29 100.0 36 ............................. CTTCCTACTTTTTGACATAAAAAATAAGCCGAGTTG 50946 29 100.0 36 ............................. AAGTTCAAAACCTCCCACACCCGCTATGAATAAATT 51011 29 100.0 37 ............................. TTCGTAATTTTACGATTATACTTTTTAGTCAAATTAC 51077 29 100.0 35 ............................. GTAACAAGTAGTGTTATACCTGCAACAATACCAGT 51141 29 100.0 36 ............................. TGGAAATGGGAAGAAAGAAATGCACTGATTGTAGAG 51206 29 100.0 36 ............................. GTCCACATCGACAATAAAAAACACATTGTATCACTT 51271 29 100.0 36 ............................. CTGGTTACTCAACTGGCGACAGTAATACACCTCAAT 51336 29 100.0 34 ............................. TTTGGATAGGTTGTTTCTGATAAATAGGTTCACG 51399 29 100.0 34 ............................. AGAAAAAAAACATCTTTCCAATTTGTTGTTTTGC 51462 29 100.0 37 ............................. ACAAGTGCTAGAACAGAAGTTATAATTTGAACATTAC 51528 29 100.0 34 ............................. AGAAGCGTTAGCGGCATTGTTCGAAAGTAATTTA 51591 29 100.0 36 ............................. TATAAAATATTGCCCAATGTGCGGAAGGAGTTTGGA 51656 29 100.0 37 ............................. AAGAAATCCGGGAAGTTTTGTTCTACAGAGCGAACGG 51722 29 100.0 36 ............................. GTGTAATTCTTAATTCCGTATTGATTCGCTAGTTTT 51787 29 100.0 35 ............................. TTTTGAAATATGAGGACTTAGAAAATGAAAAAAAT 51851 29 93.1 0 .......................A....C | C [51874] ========== ====== ====== ====== ============================= ===================================== ================== 21 29 99.7 36 GTTTTAACTACTTATTATGAAATGTAAAT # Left flank : CATTTAAAATTTGGTGGTGAAGATATGTATGTAATTTTAATTTATGATATTTCAATCGAAAATGGTGGAGCAAAAGTCTGGAGAAATGTATTTAAGATTTGTAAAAAGTACTTAACTCATGTTCAAAAATCAGTTTTTGAAGGTGAAATAACTCCAGCGCTTTTAGTTAAGTTAAGGATGGAGTTAGATAAGTATATTCGAGATGATCAAGATTCAGTAATTGTTTTTTCTAGTAGACAACAAAGATGGCTAGAAAAAGAATTTTGGGGATTAACGGATGAAAAGACTTCTAATTTCTTTTGATGTTCTCGGTCTGTCGACCTTTAGTAGTGCGAAAAATAGTGGGGTTCGACAGATTTAGGGAAATCATTGGGGGAGAAAGAGTTTGAAGTTTTTAAGCGAAAATCTGAAGGGATAAGTTATGATTTTTACGTAATTTTTAAGAGGTCGACAAAAATAGTGACCTGAGTTATGATGGGAGTAGGCGTAAAATAGAGCGG # Right flank : CGTCTTCTTAAAATTTAAACCCCAAAAATAAAAAAGGCCAGGACTCAAATCCAAGCCTTTTCCTACACTCCTCTAAACCAACAAAACCACAACCAACGCCAAAACCGCCGGCAAGCCCTGTTTCACCAAAATCCCCTTAGAAGAAGTCGCTCCGCCAAACAGCGCCGCCACAACCACACAACTCAAAAAGAAAATCTGCACAGTCTCCGCCATTCCTGCTCCCGCGAAAAACAATCCCCACACAAGTCCTGCCGCAAGAAAGCCATTATAAAGCCCTTGATTCGCAAATAGTGTCTGTACTTTCTTATTCGCAAGTAGTTCTTTCTCCACACCAAACGTCTTGGCTGCAAGGTTGGTATTGGCGAAAAACATTTCTAAAATCATTATATAAATATGCTCGATCATTACGATGAAGGTTAAAATAAATGCTAAAATGGCCATAAAAAATCCCTCTTTTCTACTCCGAAGTATAGCATAGCTTGTAAATTTTTCGTAAAAAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTAACTACTTATTATGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.41 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 3-636 **** Predicted by CRISPRDetect 2.4 *** >NZ_MJSS01000006.1 Listeria monocytogenes strain BCW_2364 PROKKA_contig000006, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 3 36 100.0 30 .................................... TATTGGTGCCGCGATTAAAGTGTTTGACTT 69 36 100.0 30 .................................... AAAGCAATAAATCAGATCATAAAGGAGCCT 135 36 100.0 30 .................................... CGACGGAAAAATTAGACGACGCTAATGTGC 201 36 100.0 30 .................................... GGGCAACGATATTTGTAGATAACAGGGAGT 267 36 100.0 30 .................................... TACGATGTTAAGCGGTGGAGTAGATCAGTA 333 36 100.0 31 .................................... TATAGTCTGTTTTTTCGTAAGTGAGCAGCGC 400 36 100.0 30 .................................... TTGGGCAAAATGACCGTAATAAATCCATTC 466 36 100.0 30 .................................... TTAGCACTTATATAGAAGCCCCGCCCCTAC 532 36 100.0 30 .................................... AGTGATGGGGAAGAGATTGAACTTATGTTT 598 36 86.1 0 .............A.....C.....T.A.......G | A,A,C [623,629,632] ========== ====== ====== ====== ==================================== =============================== ================== 10 36 98.6 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : TTG # Right flank : GATAAAATGCATCGCAATTACCAAACCATGGTTAAATTTAAAAAGGAGTTAGGCTATCTATATGACACAGTATCACTATCTTGCTTCGAAGTCGCTCTTAGAAAATGATGGGGAAAAGTTCCCTCGTCTTTATATTAGACTTCTTAAATTTGAATTTTGATATGAATGTTGACCAAGACACTAATGAATTGTTTTTCTATTCAATTGATTTGAACTCAGCTTGTAAATGTAAGTAAAGAGAACCTGCCGCTGAAAGGTAATGGGCAAAAAAATTGTTACGAGACTAAAAATTTAAAAATCTTGTATGATTATATTCTAAATACAAGTAAAGATAATGAAACGATTGAACTATATACTGCTTGAAACAGCGAGGAAGATTTCCTGTTTTTGAATAAAACAGAACTGCTGATCTAGAATTTAACTATCGAAAATCTAATTTTAAATGACAGAGAACTATTAATAATTAGAAATGAAAACCGATATAACTTTTAGCACCATTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.30,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [3.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.27 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //