Array 1 114803-116966 **** Predicted by CRISPRDetect 2.4 *** >NZ_MIOM01000001.1 Corynebacterium diphtheriae strain ST378-KZN-2015-45788 45788_contig_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 114803 29 96.6 31 ............................G TTACCGGCGGCGTCGGCGGTCTGGTCGAACA 114863 29 100.0 32 ............................. CCGGGACCTGCGGATAAAGGGTGTAACCTCAC 114924 29 100.0 32 ............................. CACCGGCCCCTTACCGCGGAAAGCGTCGGTAT 114985 29 100.0 32 ............................. AAAACCAACCCCGTGCCCACAAGCACGGGGTG 115046 29 96.6 32 ............................G TCGATCCTTTACCTGCTGCCACGCCGACGACA 115107 29 96.6 32 ............................G AGATGAAAGACTGGACGAACGCCCAGCTAAAA 115168 29 96.6 32 ............................G TCGCCTGCGGAAACCACACCCTCAAAGCGCTA 115229 29 96.6 32 ............................G CACTACTTTCCCATGGTCGTAAAGGTATGTTG 115290 29 100.0 32 ............................. CATGATCACACTCACAACCACACTCACCCTCA 115351 29 100.0 32 ............................. CTGTCATCGGATTTTTTGAGTTTTACCAACCG 115412 29 100.0 32 ............................. GTCTCGCGCCGCGACGCTAAAGCGGTGGGCCG 115473 29 100.0 32 ............................. CATTCTTAGCGCTTGGCGTCGTGCGAGCTGGT 115534 29 100.0 32 ............................. ACGCGCCCTACGTCGGCTAATTCCTCAGCAGT 115595 29 100.0 32 ............................. GCTTATTAGGGCTTCCCCGTCAACAACGGACA 115656 29 96.6 32 ............................G ATTCGACTTCCACCGATCCGATGTTTGCTCAC 115717 29 96.6 32 ............................T CCTCTGCGATTCGTGTGCGTATGGAAACCCTG 115778 29 100.0 32 ............................. GTTGGCGAGGGCACCAGATACCAATGTCAAGC 115839 29 100.0 32 ............................. TCGTCCACAACGGCTAGGCTCTCGGTCTCGGT 115900 28 93.1 32 .....-......................T CATGTGAAGGTGATGGTCGAATGAGTGCCGGT 115960 29 100.0 32 ............................. CACGGCGTAGTTGGTAGGGGATGGTTCTTCAT 116021 29 100.0 32 ............................. ACGAGCGGTGGTCTAGCGTTCCTCCCCGCAGT 116082 29 100.0 32 ............................. CAGGTAAATAGTCGAGTTATCCGGATTCCTCG 116143 29 96.6 33 ............................A CAAGGCCACTAGACGCGTATTGCCACAGTTCGA 116205 29 96.6 32 ............................G GAGACCTGATGGCTAAAGCTACTGTGACTTTT 116266 29 100.0 32 ............................. ATCTACACCACACGCCGCACACACGAAATGCA 116327 29 96.6 32 ............................G AAGCCGCGACGAAAAAACAATAAATAGAGCAC 116388 29 96.6 32 ............................G TTTTACGGATGATTCCGAGCGTCCCAGTCGTG 116449 29 100.0 32 ............................. TCTCCCCAGGTCAGATAGAGGCCATCAGGGAG 116510 29 96.6 33 ............................G CAGGCCCCCACGTCAACCCCTGCCACGTCGAAG 116572 29 100.0 32 ............................. TGTGACGTCGCGCAATGGCAAGGTCTGGTACA 116633 29 96.6 32 ............................G TTGGCTGGTGCATCTTCGAATGGGATGTAGTT 116694 29 96.6 32 ............................G CGTCGGATGTGTGCGAGGGCTTCTTTTTTGGT 116755 29 100.0 32 ............................. ACAGGCGGTTGCGCTGATTGGACTAGGAATCT 116816 29 100.0 32 ............................. CTCAAGGCCAGAGCTGGAAAAGCCGACGCCGG 116877 29 100.0 32 ............................. AGATCGTTAAACCAATCTGCTTGCTTTGCGGA 116938 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 36 29 98.5 32 GTTTTCCCCGCACCAGCGGGGATGAGCCC # Left flank : CTTACTTGGAAAGAAGCTGAGGCATTGGCTGGAAACACAGTGCGTCTGCCAGCCCAAATGACACGTAGAGATTCGGATTTTAATGCCGTTATTGATTCGCTCGAAGCACAAACACCACCAGAATGGCAACGATCCGGTTTGCTTAAAGGCCAAGTTGCGTTGTTTTTCGACGAAAGAGGAGAGGCTCGTTTAGGTCGATTCCTAGTGCGTTATACCAATGAACGTGGATTAGAGGTGGAGGTCTGCCCAAAGGAAGACGCATAAAAGGAAACCCCGCTGGTGCGGGGAAGTATGCCTATGTAAATCTTGTAGAGATATTAAAAAGGCTCATCCCTGATCGCAGGGAACAATGCCAGCCTATGGCTAGAAGAAAGGACTAAGCAAATTTGGGTGAATGGCTGATCCTAAAACAGTAGAAATAAAGATGAAGCAGAAAAATTGCTGAAACAAAGTTATATGTAATAAGCTCTAACTGGCTCTAAACGTGCAGCTTGATAAGT # Right flank : CAGGGACTTTGAGAACTGGACCGCCGTGATTCCTTGCACTAGCAGGGTGGATGAATCTTTGTTGAAGAACGGGTTTTGGGATCTGTGTTTTCATTCAGAGAAATCAGTAAATGATGGGTCTACTAAAAAATTTTGAAAAAATTAACTTTTAATATCTATAAGGTGTATTCTGTAGAGAAAGTGCTTCCTAAGTTGGGAGTTTTAAAACAATCAGGAAGGAGTTGGTGGTGGCTTCGTTACTGGAGATCCGCTGGATTCTGGCTCTTGATACTCAAGGTAACCAGATTTCAGTTGGAATACGAGATATTTTCGCGGGGGAGGTGCAGGTTGCCTATATTCAGGGGGAGTCCCCAGCTCAAGACTATGCTGTGATGCGGCTTTTGCTGGGTATTTTCTGGCGTGCCCATTCCATGGATATCGACATGGACGTGGAACCTTTTGATTTTCTTGAATGGTTCAACAAGATGAGACGTCAGCTTGCTCGAAAAGGGAAAGATCAG # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.94, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCCCCGCACCAGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCCAGCGGGGATGAGCCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-12.70,-12.70] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [63.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //