Array 1 261577-258640 **** Predicted by CRISPRDetect 2.4 *** >NZ_SNXJ01000001.1 Avibacterium gallinarum strain DSM 17481 Ga0310496_101, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ========================================================================= ================== 261576 32 100.0 35 ................................ TTATTTCTTTGCAAGAATTGAAGATCTGTTTTTTC 261509 32 100.0 33 ................................ GGCTTGTAAAGTTAAATAATAACTTTTGCAGGG 261444 32 100.0 34 ................................ AAGAGTCATTGCAATATTGCCTTTTAATTTGATA 261378 32 100.0 33 ................................ GTTTTGAGTGTTAAAAGTTAAAAATTGCCATTT 261313 32 100.0 35 ................................ GATGACCCTATCGCATTCCAGCCTTTCAGGTCTTA 261246 32 100.0 34 ................................ AAACCTTAACACGTCAAAACCTAAAAAATTTTTA 261180 32 100.0 34 ................................ CCGTTATCAACTTAAGCATCAGAAAACAGCTGTT 261114 32 100.0 36 ................................ CCTCGGGTATCTAATCCTTTAGATAGTCTTTTGATG 261046 32 100.0 35 ................................ TAGTATGGATATTTAGATGAGGACTATAGATGCAA 260979 32 100.0 35 ................................ CCATAGGGGGGTGTGCCGCCCTACCGTTCAACCGC 260912 32 100.0 36 ................................ ACGCCTTGCAATTGTGCAGAAGATATGCTCTTTAAC 260844 32 100.0 35 ................................ GTCAATACCCAAAAACTAAATTTCTAAAAATTTTT 260777 32 100.0 36 ................................ TAAATAGATAACGAAAAAAACTATAAAACAGTGTAA 260709 32 100.0 35 ................................ AAGCATCAGAAAACAGCTGTTTTTTAATTAGATAA 260642 32 100.0 35 ................................ TTGTTCGCTTGTTTTTTGTACAATTTCCATCTTTT 260575 32 100.0 34 ................................ CCGTTATCAATCCAAGCATCAGAAAACAGCTGTT 260509 32 100.0 37 ................................ ATAGGATGATACTTCACCGCCTGTCGATCCCACATAC 260440 32 100.0 34 ................................ CCGTTATCAACCCAAGCATCAGAAAACAGCTGTT 260374 32 100.0 34 ................................ AATTGCCAAGCCGTGCAAATTTTGCGAGATTTTT 260308 32 100.0 34 ................................ GTTATCTATTAAAAAAACAGCTGTTTTCTGATGC 260242 32 100.0 36 ................................ TTAGGGCTGGCAATCCCCGCAAGGATTGTACCTAGG 260174 32 100.0 35 ................................ AGCTTGCAAAGTTAAATATTAACTTTTTATTGGGT 260107 32 100.0 34 ................................ ACAGCACGGATCGGCTTTTCCTTTCTATTTTAGC 260041 32 100.0 37 ................................ AGAATAGGCATTCTTTCAACAAGAGGCTATTTCTTGC 259972 32 100.0 35 ................................ CATTTCCAGCTTTTCAATGCCAAGATCGATGGCAA 259905 32 100.0 35 ................................ TTAAGTCTGGGCGTAATATATTAATGTAATATAAA 259838 32 100.0 35 ................................ AAAATCAGATTTTATTAAGTGATGAGCGAACAAGA 259771 32 100.0 35 ................................ GCCTTTTGTTAGGGTCGCGATATGCTCGCCCACGT 259704 32 100.0 35 ................................ TCTCATTTCGTGCCTTTATTATATTTTATTCTGTC 259637 32 100.0 35 ................................ AAGAGGCAACAAATAATGGCAATTATAATTGATAA 259570 32 100.0 35 ................................ TAAACATCCTATCATCAACACAAAAGCAAAAAAGG 259503 32 100.0 36 ................................ AAGAGGCAACAAAAAACGGCAAGTAGAATAGATAAC 259435 32 100.0 34 ................................ TCTTGGTGAGCAAATGGCGGTGATTGGTCAGCTT 259369 32 100.0 34 ................................ ATCAATAATAAATAATGTTTTATCATACCTCGTT 259303 32 96.9 33 ..........A..................... ATCTTCACGTTGTAATCGCCCTTTTTTGCCTAA 259238 32 96.9 33 ..........A..................... TGCAGGCGGACACTGTTTTTATGCGTCCAGCGA 259173 32 96.9 35 ..........A..................... GTGGACAAAATGTAAGCCCCGACCAAATGACTGCC 259106 32 96.9 73 ..........A..................... AATGGCAAGCGTTGTATCAATTATTGCGTGAATTGAAACAATATCCTTGTTGGCTTTGTTGATGTTACTGCGT 259001 32 96.9 34 ..........A..................... GCTGTTTTTGGCTCTCGACCGCCCTACCAAAAAT 258935 32 96.9 33 ..........A..................... AACCCAATTTCTCGCCGTGATATTAATTTAGAT 258870 32 96.9 34 ...T............................ TACTTTACTCTTTCCCCACACAGAGCAATGATGT 258804 32 100.0 34 ................................ ATTACCTCTCGTTGCGTTAGCCCGATATAATCTT 258738 32 90.6 35 ...........................A..GA ACATTCACATCCGCTACTCTAGAGAAAGCCATTAC 258671 32 75.0 0 ...TT...C.TT....A...C........C.. | ========== ====== ====== ====== ================================ ========================================================================= ================== 44 32 98.7 36 CGGCCATCTCCCAGATGGCCGTGAATTGAAAC # Left flank : TGCGTTAGGATAACAATATGTTAATGCTGATTACTTATGATATTTCTCTTGATGATCCACAAGGTCAAGCGCGTTTGCGTCGTATTGCGAAACATTGTCTTGATTATGGTGTTCGCGTGCAATATTCCGTGTTTGAATGTGATATTGCCCCAGATCAATGGGTAGTATTAAAATCCAAACTATTGGATACTTATAACCCTGAAACTGATAGTTTGCGCTTTTACCATTTAGGAAGTAAATGGCGCAGAAAAGTAGAGCATCACGGTGCCAAACCATCAATTGACATTTTCCAAGATGCCATAATTCTATAATCGCTAACCTATTGTTCTCATCAAATCCCTGCTAGCTTAGCGAAGTATCATTGTTCTTTAAAAATCAAATAATTAATTCTGAATTTTATTTAGCAATGATTATGCTATAATCTATCTTCGCACAGAAAAGAATGATTAGCGAAATACCAAGGTTAATACCTTATTTTTGTTATATTTTTTCCCTGTGCT # Right flank : ATTGTAACTAAGAACACTATTAATCTTTATACAAAAAGTAGTAATCATTTATTCCCATTTTAGTTTTTAATGTTCTCTTGTTTTAAAGAACGCGACATCAGGATAACGATCTTGGGCAAGATTGAGATTGACCATTGTTGGCGCAATATAAGTGAGATTATCTCCCCCATCTAGCGCAAGGTTTTGTTCATTTTTGCGTTTAAATTCTTCGAATTTCTTCGCATCATCACATTCCACCCAACGGGCAGTGGCAACATTTACGGTTTCGTAAATGGCTTCCACGTTATATTCCGATTTTAAGCGCGCAACTACCACATCAAACTGTAGCACCCCAACCGCACCAACAATTAAATCATTATTAGTTAATGGGCGGAAAACTTGCACCGCACCTTCCTCGGAAAGCTGCACCAAACCTTTGAGCAATTGCTTTTGTTTGAGTGGATCTTTAAGACGAATGCGGCGGAATAATTCTGGCGCAAAGTTTGGAATGCCAGTGAATT # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:0, 3:3, 4:0.94, 5:0, 6:0.25, 7:-0.05, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CGGCCATCTCCCAGATGGCCGTGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.00,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : NA //