Array 1 6757-5401 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARSD010000003.1 Listeria seeligeri strain FSL L7-1342 NODE_3_length_460259_cov_138.764813, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 6756 36 100.0 30 .................................... CTTTTCAAGTGCAAGTGTTCGAAAAAGTTA 6690 36 100.0 30 .................................... AATACGTAACAAACATGGTATTGTTACTCA 6624 36 100.0 30 .................................... ATATTTTCGCATGAAAAGTTAAACTTGCAT 6558 36 100.0 30 .................................... GAACGAGAACTTAAAGGTTTTTCAAAGGCA 6492 36 100.0 30 .................................... AATACGTAACAAACATGGTATTGTTACTCA 6426 36 100.0 30 .................................... ATATTTTCGCATGAAAAGTTAAACTTGCAT 6360 36 100.0 30 .................................... CTCACGTTGTAACTCCTTTAATTCCCACAA 6294 36 100.0 30 .................................... TCCGAAATTAATTGGTTATGAAACAGTGAT 6228 36 100.0 30 .................................... AAATCAGGCGATGATTAAATCTCAGTATCC 6162 36 100.0 30 .................................... TTGCACACATCATGATGTGCGGAAGTATAA 6096 36 100.0 30 .................................... TGACGATACTTTCAACATCTGTTTGCGCCT 6030 36 100.0 30 .................................... ACTTAGTAATTTTTGAACATCGGAATTATT 5964 36 100.0 30 .................................... AAGTTTTCTGGTCTAATTTCCCGTACTTCT 5898 36 100.0 30 .................................... AGCGGGTGCTGCGTTGCCACTAGTGAGCGA 5832 36 100.0 30 .................................... CCCAGCTACTGGGAACTCCTGTAAGACCTA 5766 36 100.0 30 .................................... TTGTTTTTGACATAAAAAATAAGCCTTATT 5700 36 100.0 30 .................................... TCTCCCAGATAAAATCGCCACGTTCTATGT 5634 36 100.0 30 .................................... ATATATTTCGAGCGCTTTTTTAACATCACG 5568 36 100.0 30 .................................... CTATTCAAGAAGAATTGTTGCCGGCAACAT 5502 36 100.0 30 .................................... AGTTGGAAGAAAAGCGAATTATGGGCTATA 5436 36 94.4 0 .....................A...A.......... | ========== ====== ====== ====== ==================================== ============================== ================== 21 36 99.7 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : TGATAAGCTGACTGCAACAATTAGCGAGTTGATAGGTTACGAGCTATTGGAGCACGAGCTGGATTTAGAAGAAGACGAAATTACAGTCATTGAATTATTCAAAGCTTTAGGGATAAAAATAGAAACAAAAAGCGACACCATCTTTGAAAAAATAATTGAAATTGTACAAGTTTATAAATATTTATCAAAAAAGAAGCTGTTAGTTTTTATTAATGTATGTGCTTATCTTACAAAGGAAGAATTGTTAGAACTAAAGCGGTATATTTCTTTAAATCAAGTGAAAGTTTTATTTATTGAACCTAGAAAAATAAAGGAAGTTTCACAAATAGTTTTAGATTTAGATTATTTTTTACATGTGGAAAATGACGTTTAAGAATCAAATGCTCTTTGAAAATAAAATATATTTTATTTAACCCATTAAAACAGCATTCAAAATTGAAATCTTGCTATGGATGAGTAGTGCGATTACGAAATCTTAGAGGATAAAAAAATCCTACGAG # Right flank : AGAGAGGGTGAACTACAAAAGTAATATCCTTTACATCTGTTTTTTTTCTATATATAGTGGTAAAACTAGTTGGTTTATGTTATAAATTTTCTACAAAAAGATCACCTCGTTAGTTTGTTGTTTTGTCACTTCTATTCTAACAAAGGTGGTCTTTTTTGTGTATTGAAAAAATGGATTTGATTATTCCTCTCAAAAAGAAATTCTCAAATCCATTTTTCTACTTACTAGGATTTATGTCCCAGCCTCTTTTTCTATACGGACTGCTGCTTAAAACAAAACACCGAAGCAATTATCAATAACACAATCGCGGGAAAAGCTAAAAGTGCAGTAATGGCAAAACATGCGCACCCGATTATGCCTAAAATATGACCAATAATAGAAATCCCAGCTTTTTTAGATTTAACTAAACCGATAATATGAATAATAAGTCCAATAGCGGCCATTACATAAAAGAAAGCACCGACTCCGCTTGTTTGTGATCCATCTCCGCCTGAGAAACT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 134426-134060 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARSD010000005.1 Listeria seeligeri strain FSL L7-1342 NODE_5_length_238778_cov_127.050658, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 134425 36 100.0 30 .................................... TTAGAAGAGAGAAAAGAAGAATTGTTATAA C [134396] 134358 36 100.0 30 .................................... ACGCAAACCAATGAAGTGATAGCCAAAAGA 134292 36 100.0 30 .................................... TACTGTGTCCACCAATATCTGAAACGACCT 134226 36 100.0 30 .................................... ACAGATGGGCGAAACAGCGTGACTATTTAC 134160 36 100.0 30 .................................... CACTATCAACCCAAGTCGATGATTATGAGA 134094 35 83.3 0 ..................T........-.A.TG..T | ========== ====== ====== ====== ==================================== ============================== ================== 6 36 97.2 30 GTTTTAGTCCTCTTTCATATAGAGGTAGTCTCTTAC # Left flank : CTGTTTTTTTAAGCTATCTTCTAACAATTGGGAGAGATTTATTTCTATTCTGTATTCTTCGCTTTTGTTAGGACTATTTTCAGGAAAATAAGATAAATTTTTTTTGAAACGATGATTTAAGAAATTTGAGATATTAAGTTTAGTGATATCTGAAATTTTTATTTCCCCACGTTCTTTTTCTTGTAATAATCCATGAAATAATTTTTTCATTTGTTTTTGTTCAGGACGACAAATAGTTTTGTTTACCACGCTTTTGTAAAAAGAACTTTTTTTGTGATGCATGATTTGTTCTGTATTATCTTGCATTTCATTTTCATAAACTAACTTGCCCCCGTTTTTATCCCTAGAAATTAGTACTTTTTTTCTATTAACCTCTACTTTAGTAATTCTCATAGTTTTCACCTCAATGATTTTTTTCTCTCTTCTATTGTACATATAATCACAAAAAAATAAAACACCTAAATGATGGATAAGTGTTTTTATACTTATCCACATTAGAC # Right flank : TCCTACTTAATAATAGTAATTAAAACAACCAATGTAAAGGATATAATCAATATATTTAAAGTTTGCACGATAAAGCAATCATTTTATTCATAAAGATCATATCATTTATAAGCTCTATTTTCCATTTTCTAAGGATAATAAATAAAACTGCTGTACCTATGGATCTAAGGAAGACTTATGCACACAGTACAGCAACTTTTCAGCATGATTTGTGTTAAAAACATTTAATTTATTGTAGCAATTTCTTGCGTAGTCACCAACCATCTTCCCGTGTCGTCTCGCACTAATTCCAAATCCAGTAGCACTTGACTTTCATTCTTCTTTTGCTTGTCGACTTGAAAAGTAGACAAGACTCGCACAGTTACTTGGCACTTTTCACCTTCTAAAAAGTAATGTCCTATTTCTTGTTTGGTTAAATTACTCTGTACTTTCACTACATTTTTAGAATCACTCGTTGTTTCCCCTTGTTGAAAGTAAGGAACCATTTCTGCCGTGATAAA # Questionable array : NO Score: 3.12 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTCCTCTTTCATATAGAGGTAGTCTCTTAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.50,-5.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [81.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 2 138132-137766 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARSD010000005.1 Listeria seeligeri strain FSL L7-1342 NODE_5_length_238778_cov_127.050658, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 138131 36 100.0 30 .................................... TTTGGCGTAGTGAGTTATATCGAGGCGCAG 138065 36 100.0 30 .................................... CAGAAAAATAATTGATAGCTGGATATGGCA 137999 36 100.0 30 .................................... GATAGCTTCCATGCAATCGGCGGGGACTGT 137933 36 100.0 30 .................................... AATTATTCCGCAATTTGTGGCTGATGCAAT 137867 36 100.0 30 .................................... AATATTGATATAGTCTCTGCTGATACAATG 137801 36 83.3 0 ...........................A..AA.GTG | ========== ====== ====== ====== ==================================== ============================== ================== 6 36 97.2 30 GTTTTAGTCCTCTTTCATTTAGAGGTAGTCTCTTAC # Left flank : AGCAACAATGGTGTAAATAAAACATTAAAAAGCATTTGCAGTCGTCTTAACATCCAGCCAATAACCTGACACGTCTTACACCACACTCATGGTTCTGTTCTTTTGTATCATGGTTTGAAAATCAAATATATTTCAAGAAGGTTAGGACATTCAGACATAGTTACTACACGTCAAATCTATTCTCATGTTTTAGACGAATTAGAACAAATGCAAAATAGAAAAGTTGATCCCATTATGGAAAGATTATTTTAGGTGTTGTGCAACCATTTGTGCAATCTTTTTTATAAACATACCTTTTTTAACACTTTCTCAAATAGAAAAAAGAACTATAAACGGCTACACAAAGCGTTTTATAGTTCTTTTATCTTTTTCTTTATTCTTCTATTAACGTCCTTTGCGAACGTCATTTTCTTTTAATTTCCATTTCATCTTCATCTAAAGTTTCCTCTCTAATATCGACGAATTTTTAATAGCCACTAATATAGTTATCCACATCTGGT # Right flank : CTTTAAAAGAATTACTTCATCGTTAATAGCGTTCTTACTAGTTGACAGTATTCATTAGAAACTTGATTTGAAGAAACAGTACTTTTTTCACCTAAGTGGTGTATTTTTTTAGGTTGGAGTTTATCAATTTTTAAATGATGATTGGTTTGATATAGTGGTTTAAATGTCACTTCCATTCCATGAGAGCTTAAAATTTCTTTCAAAGATTTAGACACCGCATTCTTTAGTTTACGATCATAAGAAAGTACATCTCGAGCATCGTCAAATAATTCTAAAATAGAGTTCCCTAACTGTCCGTTAAGGTAATTAAAATGTGAAATTTTATTTCGGTTTTTTTTCAATGGCCAAACAAACATTTCCAAGTGATTTAAGGTTGAAAGTAATAGCTGAAGATTATTTTGTAGTTGTTCATTTTCTTTTACGACTACACATTCTGGTTCAGAGGTATCTTTAATATTATATAACTCATGACGTTTATAGTTTTTATTCCTAAACCCTAT # Questionable array : NO Score: 3.12 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTCCTCTTTCATTTAGAGGTAGTCTCTTAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.50,-5.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 172238-170856 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARSD010000004.1 Listeria seeligeri strain FSL L7-1342 NODE_4_length_423896_cov_124.287269, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 172237 29 100.0 36 ............................. AACTGATAGAAGTCATCAGTTGTTTGCGGATATAAT 172172 29 100.0 37 ............................. ATGGAAATTATCCACAAAAAATGGGGAACTGGCTTTT 172106 29 100.0 35 ............................. ATTTCACTAAATTTCCCGGCGAAGTATACACCGTA 172042 29 100.0 36 ............................. TTCGTTAAGAGGATCTTGTGCCTTCGTCAGATTCCT 171977 29 100.0 35 ............................. ACAGGTATCGGCTCAACAGTTTTAGAGAGCATCAC 171913 29 100.0 35 ............................. CTATCAGTTTCTTCCTCCATTGTTGTTCCATCTTC 171849 29 100.0 34 ............................. ATTTCAAAGTTCATTTAATTTCCTCCTCTAAATC 171786 29 100.0 34 ............................. ATATGATTAGAGAAAGAAAAATAGAACCATTTTA 171723 29 100.0 34 ............................. AAATATTTAGTTTCTTGGCTGATCATGCTTTGAC 171660 29 100.0 36 ............................. TGAAAATTAAAATAAACGGAGATTACGTAATCAGAG 171595 29 100.0 35 ............................. AAGACCGGAAAAGTTTCTAGCAATGCGCCGGAAGT 171531 29 100.0 36 ............................. CTTTATCCGTTCCGGCTAAAGTAGGCGATATTTTGC 171466 29 100.0 35 ............................. GTTACTAATGACCATCCGGCCGAACCAGTTAATGC 171402 29 100.0 38 ............................. TTCGGTCTAGTTCTAGCTTTTCTACCCAGTTTGGATTT 171335 29 100.0 35 ............................. TATCAAACTCAGTTGCTGGCACTAAATTATAGACC 171271 29 100.0 34 ............................. ACATGTCGTTTTTAAAATTACGAAAAGCGGATTT 171208 29 100.0 36 ............................. GAAAATAAGAAATGAGGTCGAAACATGCCGAATACA 171143 29 100.0 36 ............................. AACCATCTGGTAGATCAGTGGGGAATGGAATTTTGT 171078 29 100.0 36 ............................. AAATATCATTTGACTGATGAAGAAATTCATGAAGTA 171013 29 96.6 34 .........................G... TGTGGTAGATAGCATCGCCAAGGGAGGTAAGTCG 170950 29 100.0 37 ............................. GTGGTCACAGCGTTCTTATTGCCAGCTGGTGAGCCCC 170884 29 75.9 0 .......C.G.....CA......A...CC | ========== ====== ====== ====== ============================= ====================================== ================== 22 29 98.8 35 GTTTTAATTACTTATTGTGAAATGTAAAT # Left flank : CTTCAAGATTTGGTGGTGACTATATGTATGTGATTTTAATTTATGATATTTCTGTGGAAAACGGTGGGGCAAAGGTATGGCGCAATGTGTTTAAGATTTGTAAGCGATATTTAACACATGTCCAAAAGTCTGTATTTGAGGGTGAAATAACGCCAGCTCTTTTAGTGAAATTACGGATGGAGCTAGACAAATATATTCGTTCAGATATGGATTCAGTGATTGTCTTTTCCAGTAGGCAACAAAAATGGTTAGAAAAAGAATTTTGGGGACTGGCTGATGAAAAAACGTCGAATTTTTTCTGAATAAATATTTCTGTCGACCTCCAGTAGTGCAAAAAACACTGGAGATCGACAGAAACGTAGGAAGCCTTGGGGGAGAATGGTTTTTGGTGAATATGCTTGTTTAAGTCGAGAAAATAAGATAGATTTTACCTGCTTTTTACGGCGGTCGACAAAAACAAGCCCGTGAGGTAAGATGGGAGTAGGGAAAGATATTGGCGG # Right flank : CCACCCACCCTTAAAGCCAATAATCTGCTCTAAGGGTTTTTTATTCGAAAAACCCCACCCTCAACCTCCCATTTTTTTCGTCCAGCGAAAACCGTTTTCGAAATACTTGTAACCGCTTGCAAGAGTGGGGCTCTATAACTATAATGAACGTAGTAATTGAGTCAGATATAATATTTTTTCAAAATTAGCTAACTGGAAAAATAGAAAACGGAAAAATGGAAATATTTAATCATGTTTTCATTTTAATCTAACAAAAAGGAGAGCTTAAGTATGAAAAAAATCGTATCAATCGGTTGTGTTGTGGGACTTTTAATGCTTTTAGTGGGGTGTGGAAGTGAAGAAGCATCGAGTTCAAAAGTAGAGTTTTACACGGATAAAGGTGGAGAAAATGTTGGTATTTTGAATTCTATGTCAGATCAGATTGAAAAAGATGGGGGCGTTGGGTTTAAAACTGTAGGATATACGGATGTGACATCTTATGAGACAGCGGTCCAACAATC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 182367-180852 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARSD010000004.1 Listeria seeligeri strain FSL L7-1342 NODE_4_length_423896_cov_124.287269, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 182366 29 100.0 37 ............................. TTCTTCTTCCTCTCCTTCCTTTAGATACTCTCCCTCT 182300 29 100.0 35 ............................. ATCGCTTTTAATCCCGGTTGAATAACATCCCAATC 182236 29 100.0 36 ............................. ATTAAAGTCCGGTCGACCTCTTTACTCTCAGCAATC 182171 29 100.0 35 ............................. ACTGCTAAGATGATGACTGCTTCTTTCACTTTTAA 182107 29 100.0 36 ............................. AGACATATTTATTAAGAATACAAAGAACGGAACACA 182042 29 100.0 35 ............................. CTTTTTGTTTTTAAGCGAGGTGTACCTCCCTTTGT 181978 29 100.0 34 ............................. ACAAGATCGTGACTGCTGAGCCTGTTTCTGCCAA 181915 29 100.0 35 ............................. CGACCCCAGCGGGATAGATATGAGTAGGGATATCG 181851 29 100.0 36 ............................. CCCTTTGTTTTCGCCATTCCGGCGATAGTAAACACC 181786 29 100.0 35 ............................. TTGTTTATGACCTCATCGTCATCCAATGGCTTATC 181722 29 100.0 36 ............................. TTCTCTTGCTGTAACTGATGAATCTCATCTGTAAGT 181657 29 100.0 37 ............................. TATTTATAACGCCAATTACCTGTTTCAGTCGCTACAG 181591 29 100.0 36 ............................. GTTTGAATGCTCTGATTAAATGCTGTTTGAGATTGC 181526 29 100.0 36 ............................. TCCATTCTGAAGTGAAAACAAATTATTTTGTCTTTT 181461 29 100.0 35 ............................. AAACGACGCGCTGTATTATTAGCTTCTTTGAAATT 181397 29 100.0 35 ............................. GTTAAAATATGCTCTGATTGTTTTATGACTGTTTT 181333 29 100.0 36 ............................. ATTATTATTTATTTTCGCTTGAAATAGCGTAGGGAA 181268 29 100.0 36 ............................. AAAACAAGCGTAGAAAATAAAGATGAATATTTTCTT 181203 29 96.6 34 ................T............ GAATACGGGCGAAGCATTACCGTCGTTCGTTTGT 181140 29 100.0 35 ............................. AATTTAATTTAATAGGAACATTCATTACAGACGCC 181076 29 100.0 36 ............................. ACTCACGTTTGATTTCTATCTTCACAAAAGCTTTGC 181011 29 100.0 36 ............................. TAGATACATCTACAACACGCAAAAGCGTCCCAACAG 180946 29 100.0 36 ............................. CCACGTGGGGAAAGTGTACCCTGCCCTGTTACTAAT 180881 29 86.2 0 ........C....C..A...........G | T [180854] ========== ====== ====== ====== ============================= ===================================== ================== 24 29 99.3 36 GTTTTAACTACTTATTGTGAAATGTAAAT # Left flank : AAAAGTCACCGTTCCATCTTTTTTCTCTTTTGTCTCTGCTTTGCTCGTCGTTGAATCATTCCCACAGCCCGCAATCAGTAGTAAAGTACAAAACACCACCATCAACTTCCAAACATTTTTCTTCATCCTTTTTCTCCTTTTTTCTATATAGTTTTTAGCAAAATAAAAACCCAGATAAATCAAAAAATAGCCCAAAAGCCATCTTCCAATCCATCTAGGTTATGCCCAAAATAGGTAACATTCCAGAGTGAGGTATTTGTTTATAGGATGATTTTAGCACAGATAGTAAGCGTTTACAAGTTTGCGCAATTTCTGTCGATGTGTGGTAGCGTAAAAAGTACTGGAGACCGACAGATTTGCGGGATGCATTGGGAGAGAATGAGAGTGGGGGGTATTTGGGTTTTGAATAGTAATTTTAGGAAGTTAAAAAGCTGATTTTGAGATAGGTCGACAAAAATAGCCTTGTGAGGTAAGATGGGAGTAGGGATGAAAATGGACGG # Right flank : CCCTTCAATCATGCTAGTAAAGCTGCAGAAATAATTATTTCGAATTATAAATTCATCTAGCAACTAAAACATAGATAGTAGCATTATCATAAATTTCCCAGACAATAAAAAATTAAAATCAAATTCTTTACTAGTTTTAAGGTATAAATCTTTTTAACAAAAAGTGAAAAATTTCAATTAATCATATAGCAAATGTTAAGTAAAACACTAGTATTTTCAGTGTTTTTTTTTCGCTAGCATTCACTCTTTTTTTGTGTTAAATTAAACACAAGCAACAGATGGGGGTGACAAAAATGAGACTAAAAATAAATTGTGATTTCGAATCCAACATAATACCGAAAGACTACAGAGGTAAAATAGTCAGTTTATTCAAAACAGGAATTGAGAAATCTAGTCCAGAAAGATATGGAGATTTATTTGGTAGTAATAAGCGGAAAAATTACACTTTTTCGATATACTTGCCTAAACCTAAAAATAATAAAAATGAAATTTATCTTGAA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTAACTACTTATTATGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.10] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 3 189132-188588 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARSD010000004.1 Listeria seeligeri strain FSL L7-1342 NODE_4_length_423896_cov_124.287269, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 189131 29 100.0 37 ............................. TTTGTTAAAATAAAAGAAGACTTGTACGAGTGCGATT 189065 29 100.0 34 ............................. GATGAATACGAGGATGAAGATGGTGGAGATGAGG 189002 29 100.0 35 ............................. ATAACAACCTTATTTATTGCTTGCAAAAGCCCTGC 188938 29 100.0 35 ............................. TTTTCTAACATTTTATCAATATAAGATTGAGCTAT 188874 29 100.0 37 ............................. GTAACAAAGCTATAACGGAAGATTTAAATGAATTACG 188808 29 100.0 34 ............................. TACTGTAACTCATAAAACTTTCTTCTTGTAATTT 188745 29 100.0 35 ............................. GGTCGAATTAGTTAATATTGTCTCGCCTTTATTTT 188681 29 100.0 36 ............................. ATTTGAGCTTTAGTTATTTGATGTGGATTATTTATT 188616 29 96.6 0 ............C................ | ========== ====== ====== ====== ============================= ===================================== ================== 9 29 99.6 36 GTTTTAATTACTTATTGTGAAATGTAAAT # Left flank : CGCGCAACAACTTCAGCCGATGTCCTGCTAGAAAAAGGCGCTGTCGAAGTCATTGCCTGCGCAACCCATTCGGTTATGGCTGGAAGCGCAACTGAACGCTTACAAAACTCAAAAATCAAAGAAGTTATCACCTCTGATTCCATTGATCTACCAGAAGATAAACAATTTGATAAATTAACAACCATCTCCATCGGCCGCATCCTAGGCCGCGCAATCGAAGGCGTTCAAGAAAACCGCTCATTGCATCCGTTGTTTTAAGAAAATCTATAAGCAGAGACTCAAACTGGGTCTCTGCTTTTTGTACGTTAACTTCTGTCGACCGATAGTAGTGTAGAAAACAAGGGGGATCGACAGAACATTGGATTCCTTTGTAGGAGAATAGGTTTGGTGGGTTTTTAGTTATGAAATTAAAGTTCGGTGCTTTGATTTTAAGAGGTTTTTTGGAGATCGACAAAAATAGGCGCTTGAGGTAAGATGGGAGTAAGAGGAAAAGTGAACGG # Right flank : GTCTCCCAGTCCACTTGCTTCAAGTGACCAGAAGTGTTTTAACTACTTTTAATCATCCAAAAAACACCAAAGAGGAGGAAACACTTATGAAAAAAGCATTTATCCCGCTTCTATTTTTACTATTCCTACTAGCTAGTTGTTCCGCGCCCAATGAAAAATTAACAAAAAACACCAAGATTTTTAAAGAAGGCGTCATTAATGCGGATTATCAGATTCCACAAAACCTAGCAGAGCTTGAATCTAACAGTGAAGATATCGTAAAAGTGAAATTACTACAAAATAAAGAAAATGGCAAAAATAACAGCACAATAAGTGAAGTAGAAATTATCGAGAAATACAAAGGGAATTTCGAATCAGGTGAGAAAATCGACATTTCAGAACCTTGGCTTTTAAACACAGGGGAGTACCAAGCTGTGGAAAACTACATTGCACTTGAAAAAGATCAAGAGTATCTCTTGTTTTTAAGCGGAGGACATGACGGGGATAGAGTAAGTTCTATC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //