Array 1 7123-6239 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHGK01000030.1 Salmonella enterica subsp. enterica serovar Worthington strain CVM N45406 N45406_contig_30, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 7122 28 96.6 32 -............................ TATTTGGACAATCAGGTCGAGGTTCAGTATGA 7062 29 100.0 33 ............................. TCACAAATGCGAGGAGTCAGCCCAATGAGCAAC 7000 29 100.0 33 ............................. ACGGGACCGATATTCTGCTGCCCGGGGGCACGC 6938 29 100.0 32 ............................. GAGTTCAGTCACTTGAATGATGCGCGGGAATA 6877 29 100.0 32 ............................. GTCGTCTGGCATATGTGCGTAGCCACCTCGCA 6816 29 100.0 32 ............................. CGGATGATTCGCGCATGACTTGGGCTACTGCG 6755 29 100.0 32 ............................. GGATATCGAACTCTTACCGCCGACGATATTGC 6694 29 100.0 32 ............................. AGAGATTGATTAAATGAACAGTAACAAACTAA 6633 29 100.0 32 ............................. GCGCGTCAGCGTGGATTAACTCAACAGCGCTC 6572 29 96.6 33 ..........A.................. TCTGGTGCTGGCGGTTTACTGGGGAGTATTGGC 6510 29 100.0 32 ............................. GAGTTTGGGGGCACTATGAAGGGATCGATGCT 6449 29 93.1 32 .........C..T................ ACGTTTTGCGAGCCATCAGAAACCTTAAATGC 6388 29 100.0 32 ............................. AAGGTTAGCGTTGTCATTGATCTGGTCGGCAA 6327 29 96.6 32 ............T................ AGCGGCTAAACCTGCCGGTTATCGCTGAGCAG 6266 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 15 29 97.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : | # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 2562-4302 **** Predicted by CRISPRDetect 2.4 *** >NZ_LHGK01000015.1 Salmonella enterica subsp. enterica serovar Worthington strain CVM N45406 N45406_contig_15, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2562 29 100.0 32 ............................. CCCCTCGCCCTCGATCTGGCGTTAGTTACTGG 2623 29 100.0 32 ............................. TCACACGTTAGATCAACAGTTGTGTCCGTATT 2684 29 100.0 32 ............................. GGCCTGATGAAAATTGCCGATAGCATGGACAA 2745 29 100.0 32 ............................. TTTACAGGTCATTTTGCTGTCCTCATTTTTGG 2806 29 100.0 32 ............................. TACTGGATATCAACCTGCCTGAGTTAAAGACC 2867 29 100.0 32 ............................. CCTTGTGTGCAATGCAACAAAGGCGAACTGGC 2928 29 100.0 32 ............................. ACACTCAACGCTGTAGATGTAGTCAGTAAACC 2989 29 100.0 32 ............................. GCGTGGAGTAATGGGCGGCTAAAACTGCCGGA 3050 29 100.0 32 ............................. ACCGCAGGTGATATTGACACCGGAGCAGGGGG 3111 29 100.0 32 ............................. CCAGTAGTCAAACCCCAGATTGAGCAGTGAGA 3172 29 100.0 33 ............................. CAGCAAAAGTAAAAACCGCTTCCGCCCAATTGC 3234 29 100.0 32 ............................. GCTACGGTAAACGTGAATGTGCGTATTGACGC 3295 29 100.0 32 ............................. GAATATAGGGCTTCATATTTGCCAGTTGTTTT 3356 29 100.0 33 ............................. ATCGGGCGGGATATGTGCTGGATTCGTATTAGC 3418 29 100.0 32 ............................. GTTGAATAATCCCCGCACATCATCCTGTAAAA 3479 29 100.0 32 ............................. CAGTCTGCGGGGTTTCCTGCGTGTAATGAAGT 3540 29 100.0 32 ............................. GGAAAAAACGCTTGTCGCCAAGTATGTTTTTG 3601 29 100.0 32 ............................. CACAGAGTTAAACGCCGCTGCAGCGCTGTTTA 3662 29 100.0 32 ............................. TTTTTATCACGCTCAGACCTGAAAACAACCGA 3723 29 100.0 32 ............................. TTCCATATTCAGGATCATATCCGCACGATAAC 3784 29 100.0 32 ............................. CCTGACGCCAACGGAAACGTGAAAGTCTCAAC 3845 29 100.0 32 ............................. TGTTCCCCCAAGGTTCAAAAATTCAATATGAG 3906 29 100.0 32 ............................. GATGACCCGTATACGTTCAAAATCAAAATCTA 3967 29 100.0 32 ............................. CAATAGGGAAAATGGCATATGAGGGCGCGCAA 4028 29 100.0 32 ............................. TAAAACGATATTCCCGGATAAAAACGGAAAGC 4089 29 100.0 32 ............................. CCGACATGGGCAGGATTGCTGACGTTAGTCGA 4150 29 100.0 33 ............................. GCCTCAAGGTCATGCAGGTGAATGTCCCCAGAC 4212 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 4273 29 96.6 0 A............................ | A [4299] ========== ====== ====== ====== ============================= ================================= ================== 29 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGAGAATAAAAGCGCTCTTTCCTTTAATTACTTTGCCTGAAGCCTGGGATGAAGATGAGGGTATCGACCAATTTCAGCAACTTTCCTGGTTTATTTCCGCTGCGGTTGTACTGGCTGACTGGACTGGTTCTGCCAGCCGTTATTTTCCGCGTACTGCGGAAAAAATGCCTGTTGATATCTACTGGCAGCAAGCTCTCGCTAAAGCACAAACTGCCATTACGCTATTTCCCTCAGCGGCGAATGTGTCTGCCTTTACGGGCATAGAAACGCTTTTCCCTTTTATTCAGCATCCCACACCGTTACAACAAAAGGCGCTTGAGCTGGATATCAACGTGGATGGCGCCCAACTCTTTATTCTTGAAGATGTCACTGGAGCCGGAAAAACAAAGGCGGCGCTCATATTAGCTCATCGACTGATGGCGGCAGGTAAAGCGCAGGGACTCTATTTTGGACTGCCGACAATGGCGACAGCCAACGCGATGTTTGAACGTATGGCGAAC # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //