Array 1 107307-106720 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMVF01000023.1 Streptomyces naganishii JCM 4654 sequence23, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================= ================== 107306 29 100.0 32 ............................. GCACCTATGACAAGCAGGCCCGCAAGTGGCGG 107245 29 100.0 32 ............................. TTCTTCACGACGTCCACGTCCCGAGTCGGCCA 107184 29 100.0 32 ............................. CGGCGCGTCATCGGCTCCGTGCTCCAGCGCCC 107123 29 100.0 32 ............................. TGCCACCCGCCGGTGGGCCTGTACCGGGACAA 107062 29 100.0 32 ............................. ATCCAGAACGTCACGATGCGCGACGTCACCAT 107001 29 100.0 32 ............................. CACATCGCCGCCGCGCCCTCCGGGCCGTACTT 106940 29 100.0 32 ............................. TGCTCGCCGGCCTGCACCAGCGAGTCCCTCGT 106879 29 100.0 32 ............................. GTCCACTCCCTTCGCCTCCCGGACGGGGGTCT 106818 29 100.0 41 ............................. GGGGCGGCCGCGTCCTTGTTGGGGAGGGCACCCTGTGCGCC 106748 29 96.6 0 ..........A.................. | ========== ====== ====== ====== ============================= ========================================= ================== 10 29 99.7 33 CTGCTCCCCGCACCCGCGGGGATGGTCCC # Left flank : GCGACGGAACCTTCTACGAACCCCGAACCCCACAGCTCGCTTGACGAAGGACATAGAGGCCCCCCCGGAGC # Right flank : TCCGACGAGTAGACGGGGTCAAGCGCACACTGGTGCCCGCTGCGTGACGCGAGGGATGCCGAGCTACTTCGGCATGACCATTCCCTGGTCCGTCACCTCGTAGCTCTGCAGGCACTCCAGGAGCCCAGCCTCCGACACGTTGTACGGACCGCCAGCCTGCTGCTTGCAGTACTTGGTCAGAATCTGACTCTTCTGGGCAGGAGTGAGCCCGACAGGCTGGTTGTTCTGCTGCTGGTCGTTCTGCGACTGGTCTCCCTGCCCCTGTACCCAGGGATCTGGGGAAGAGGTGCCGGAACCTCCACCGGAGCCCAGGACTGCACCGCCCAGAAAGAATGAAGCGACCGCAACGGCGACAACCCCGCTCCACAGGACCACCGGTCGCTTCCACCGGGGCATCTCCATCCTGGCAAGGATTTTCCGATACTCCGGATCGCTCTCCCACTCGTCCCGCCAACCGTGCGGGACCGCATCCGAGCCGATCGCCAGGTGCGCGGTGGGAG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [31.7-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 92393-90106 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMVF01000024.1 Streptomyces naganishii JCM 4654 sequence24, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 92392 29 100.0 32 ............................. ACGTACAAAAAAGGACACTTCGGCATTTTCCA 92331 29 96.6 32 ............................T CCTCGACCGAAGGGGCCGCCGATCCGGATGTG 92270 29 100.0 32 ............................. GGCTCACCGCTGAACAAGGCTGGGACGCTGGC 92209 29 100.0 32 ............................. ATGAGCCAGTTCGGCCGCTCTCTGGACCAGCA 92148 29 100.0 32 ............................. TCCCGCCGCTGCGGTGCCGGGTCGGCCGGCTG 92087 29 100.0 32 ............................. CGGGCGATCGCCCAGAGCGGTGGCACCCTCGG 92026 29 100.0 32 ............................. AGGGACTTGCCTGCCTTGCCGTCGCCGACGAG 91965 29 100.0 32 ............................. CGCGGCGCCACCGCGGAGGAACTCGACAAGCT 91904 29 96.6 32 ............................A TCGCAAAGGGCTTCGTCGACGTCGGCAAGGAC 91843 29 100.0 32 ............................. ACGTGAGCGAAAGTGCGTCGTCGTCCCGTCTC 91782 29 100.0 32 ............................. GACGCCATCGCGGCACTCACCGCGGGCGGTGA 91721 29 100.0 32 ............................. GAGGATGGCACGCGGGAACTGGTCCGAGTCGA 91660 29 100.0 32 ............................. TGCAACCTGCGGCGCAGGTTGCCTGCTGTCCA 91599 29 100.0 32 ............................. AAGGTCATGAGCAGCCCGATCGTCAGCTTCGG 91538 29 100.0 32 ............................. CCCTCAACGGCGGAGAGTCAGAATGTCGCTCA 91477 29 100.0 32 ............................. GAGCGGGTCGAGGAGTTCGCCTCCGAGCACGG 91416 29 100.0 32 ............................. GAGCGGGTCGAGGAGTTCGCCTCCGAGCACGG 91355 29 100.0 32 ............................. TGTCGGGATCCTCAGCGAGCTGTAGACGGGCG 91294 29 100.0 32 ............................. GGCGAGCACAACGCGCTCGCTGACGCCCGGCA 91233 29 100.0 32 ............................. GCCTACACGGTGTGGGGTCTGACGGGCTGGAC 91172 29 100.0 32 ............................. CCGGGCGATGGTGGCGAGCCGCTCGGATGCGG 91111 29 100.0 32 ............................. AGCGACGCCGTCCTCCACGACACCCGCGGCGG 91050 29 100.0 32 ............................. TCCGAACCCGTGTCTACACCTGTCCTCCACAT 90989 29 100.0 32 ............................. AGCACATGGTGGGCGTGCACCCGCTCCGTGCC 90928 29 100.0 32 ............................. GGTGACGCGCCGGCCTACGGCAAGCGGTCCCC 90867 29 100.0 32 ............................. CTCCAGAACCGGCACGCGATTCAGTACGGGCA 90806 29 100.0 32 ............................. GACGTGTGGGCCGTCGTGAGCGGGGCCGTGGG 90745 29 100.0 32 ............................. ACCCCGCCCCCGGTCGTGTCGGACGTGGACGG 90684 29 100.0 32 ............................. TGGCGTGGCACCAGAACGCGCACGCCCTCGTC 90623 29 96.6 32 ..........T.................. GACCTCCTGAGCGCGGGCATCAGGACGCCGGC 90562 29 100.0 32 ............................. GCGTCGTAGAGGCGTCGGTCGTTGCTGCCCTT 90501 29 100.0 32 ............................. GGCCGGCGGTGTCAGCCGGGCGATAGCCCAAA 90440 29 100.0 32 ............................. TGGCCGTGGATCCTGGGCGCGCTGACCGGCCC 90379 29 100.0 32 ............................. GACCCCGCCAACGCCCGCTCAGCGCACCGCCG 90318 29 96.6 32 ........................C.... ACGTGCGCCGCGTGTGGGGCGAGATCGAAACG 90257 29 100.0 32 ............................. TCCGGTCCCACCTTCCCCACCTTCTTGGCCGA 90196 29 100.0 33 ............................. TACACGGACTCCCCGCTACACCGCCGCGGCGAA 90134 29 96.6 0 .........................C... | ========== ====== ====== ====== ============================= ================================= ================== 38 29 99.6 32 GTGCTCCCCGCGCCCGCGGGGATGGTCCC # Left flank : CTACGGCAGCGAAACCGGTGATTACGACGTCTACGGCGACGTGGAGCTCTCCTGGTGACCGTCATCGTCCTCACCAACTGCCCGCCCGGCCTGAGGGGCTTCCTCACCCGCTGGCTCCTCGAGATTTCGGCCGGCGTCTTCATCGGCAACCCTTCCGCCAGGATTCGCGATCTGCTCTGGGACGAGGTCCAGCAGTACGCGCACCAGGGCCGCGCCCTCCTTGCCCACACGACGAACAATGAACAGGGCTTCACCTTCCGTACCCACGACCATGCCTGGCACCCGGTCGACCACGAGGGCCTGACCTTGATCCGCCGTCCGAAAGTCCAGAGTTCCTCAAATGCCGCGAGCACCGCACGAAAGGGCTGGAGTAACGCATCCAAGCGACGGCGGTACGGCAAAAGCTGATGCGTGAAGTGTTCCTTATGGGCGTTTCATCGGAGTCGGCGAAACTGCTTCGAAGTGACCTGTCTCCGTGACAAAGCCGCAGGTCATGAAGT # Right flank : GTGCCCAACGTTCGCGGTAGCCGTGGGTAATCGGCAGCCGGTGTAATGAAGGCAAGCATCAGAGGCCCGACGGTTGCAGTCCCGGTTGCGGTTCGCCCTCGTACGCGGTCGTCCGAATTCGAACGTGTAGCAATGCCTCCTCGGTGGTGAACGCTAATGAATCGAACACCGGCACGGCTCAGGGGGCTTAAACCTCGCTGCCCCTCGCGGGCGTACCGGTTCAAGTCCGGTTCCGGGCACCACTCCGCCTGCGACGCGGGGCGAGGTCCGCTCCCGGAGTGCTTCGACTGCGGCGGTCCGTGGGCTGCGGCTCCGGTTGCCCATTGACCTCCCTGCAGGGTCTCGCCGGCCCGAGTCGCCGGATCCTTTTCCAGGTGGCGCGCTCTGCCTGTCGTCGGCGCCGGCCGAGTGCGGCGCGCCAGTCCGCTTGCGGTGATCCTGCTTGCCGTCAGCGCGGTGTCTCGCCGAGGGCGGCGCGCAGCCAGTCCAGGGAACCGGTT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 102047-103907 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMVF01000024.1 Streptomyces naganishii JCM 4654 sequence24, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 102047 29 100.0 32 ............................. GGCCACGCGGGCGAGACCTACTCGCAGTCGAA 102108 29 100.0 34 ............................. GGCGCGCAGCACAGCCGGCCCCCCCCCTCCCGTC 102171 29 100.0 32 ............................. CGCTCCACCGCGACCGGCGACATCACCGTGCA 102232 29 100.0 32 ............................. GGAAGTGAGTATTGGTCTGGCCACGGCCGTTT 102293 29 100.0 32 ............................. AGATGCCTTACGACCGACAGCCGCCCTCGGGT 102354 29 100.0 32 ............................. CTGGATCAAATGCGTGTGGTTCGAGTGCGAGA 102415 29 100.0 32 ............................. CTGCCGTGGGCGGGCCTGAGCGGCGAAGACCG 102476 29 100.0 32 ............................. TCAAGGACTTGCAGGCGGAGAACGACCGCCTG 102537 29 100.0 32 ............................. GTCACCCGCTGTCCGAGCCGGGACTGCGCCGA 102598 29 100.0 32 ............................. GGCACCCCCAAGAGCGGCAAGCCCACCAGCAA 102659 29 100.0 32 ............................. TACATGTCCCCGGTCGGGGACGACCCGCGCCA 102720 29 100.0 32 ............................. TTCACGCCGCACCGCAGCGAGCACACGTGGGA 102781 29 100.0 32 ............................. CTCTACCCGTGGTGGACCGGCGGCCGGGAGAT 102842 29 100.0 32 ............................. TCCACAAGACGGCCACGTTCACGGCCAGCCCA 102903 29 100.0 32 ............................. TCTCCGCCGAATTCCACAGCCTCCTCGACGCC 102964 29 100.0 32 ............................. CACAGGCCGACGGCCCCGCCGAGGATCACGGC 103025 29 100.0 32 ............................. CTCGGGCTTGACACCCTGGGGTCCCTGCTCGA 103086 29 100.0 32 ............................. GAGACCCGCGCCAACACCCGCGAGGCACAAGC 103147 29 100.0 32 ............................. GGGGTCAGCTGGACGCCGACCTCGTCGAGGGT 103208 29 100.0 32 ............................. TCGATGTTCGACCCGGCTACGGACGGCACCCT 103269 29 100.0 32 ............................. ACCGGCTGGGTGAAGGTCGGGACGAGAGGGGT 103330 29 100.0 32 ............................. CGGCCACCGGGCAAGGGGGGTTCGCCATTTCG 103391 29 100.0 32 ............................. CTCCACGTGGAACGCCAGCAGACCGAAGGGAT 103452 29 100.0 32 ............................. TGAGCTACGGGTCATGGGGGAGGGTCGGGAAT 103513 29 100.0 32 ............................. GTCGGCCAGATCGACCCCAAGACGGGTTACGT 103574 29 100.0 32 ............................. GATGCGGACTTCTATTGGCTGCCCGAGGGAGT 103635 29 100.0 32 ............................. AGGAACTCGGCGAGGTGGTCGCGGATCTGTGA 103696 29 96.6 32 ............................T CAGCCGGACGTGGCTATCGCCTCGTTGGAGAA 103757 29 100.0 32 ............................. CCGACCGTCATCGGCATGATCTGTGCCGCGCC 103818 29 100.0 32 ............................. GCCCTGGGTTCAACGACGTCCAGGATTTCGGC 103879 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================== ================== 31 29 99.9 32 CTGCTCCCCGCACCCGCGGGGATGGTCCC # Left flank : CCTTCCCGATGTCGTGCACACCGGCCAGCCACACCACCAGCCGGCGCGCATCCACTTCCCCACCAGGCAGCGCGCCGGCGATCAGCCTCCGCACGGACAGCGGCAACCACTCGTCCCATAACCGCCCGGCCACGGCGGCACTGTCTTCCATATGCCGCCACAAAGGCAGCCACCGGTCGGAATCACGCTCGTGCTTGGCCCACACGCTCAACGCCGGCCCACCCAGCCGGGCGCGAAGCCCCACTGGGGTGCCCCCCTCGCCTGTCATGCCAGATACATACAGGATGTAGATGAAGAGTGAAGCCAATATGAAGAAAACGGAGAGGCTCTATCGTTACCCGGAGCGCCGCACCGCAGACCGCGAGCAGAAACGACCTCGGATGGACTTTCGATTGACAGCCCCAAAAGGAAGCCAAGCGGGAGATAGGTACCTTTTGCCGGATTCTACGAAACTCATGAAAACCACGGCACCTGCGTCATAAACCCGCAGGCCGCACAGT # Right flank : GAAGGGCCCCACGCTCCCTCCCCCCCCCGTTATCTTCTTCGCGGTCCTGCAAGAGGGCCGCTGGCCTCCGGGTCCGGCATGACT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //