Array 1 66942-64962 **** Predicted by CRISPRDetect 2.4 *** >NZ_CBLP010000013.1 Lactobacillus acidophilus CIRM-BIA 442, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== =================================== ================== 66941 27 100.0 34 ........................... TAAGAGAAAACGGTGGTTTCCTCTTATTTTTATG 66880 27 100.0 34 ........................... TAAATCCGGACAACGCTTGCCACCTACGTATTAG 66819 27 100.0 34 ........................... TCATTGAGACACACATTGCGACGACTAAACTCTG 66758 27 100.0 34 ........................... TTTTAATGAAAGGTGCTAGTTTTGTGACACTTTG 66697 27 100.0 34 ........................... TGATTTTCCAGATTCGGCTACTATTTTGGCAGAG 66636 27 100.0 34 ........................... CTTAGGCTATTCCGCACACAATATGTGGCGTGGG 66575 27 96.3 34 ..............A............ TGACTGCAATGCAAGCAAGAGCGGACATAGCAAG 66514 27 100.0 34 ........................... CGTCATAAATTAGCTTTCTGCCCTTTTGCGTCCG 66453 27 100.0 34 ........................... TGCTGCTACGAGCGCTTTTGGTCACATTAAAGAG 66392 27 100.0 34 ........................... TCATTGATGCACCGGTACTTAACTCAAATCAAAG 66331 27 100.0 34 ........................... TGACTACGATATTTTCTTTTAATTATATCTTGGG 66270 27 100.0 34 ........................... CAATATCATCAGCATTTTTCACACCAGAAAATAA 66209 27 100.0 34 ........................... CGATTTGCGTGGCAAATGAATGGTTGATCTTGAA 66148 27 100.0 34 ........................... TATTCTTTTTCACTATCAAAATCAAATATTTCTA 66087 27 100.0 34 ........................... CACAAAAAAGCCACCTAGAAGATAAAATTCTTCA 66026 27 100.0 35 ........................... CCTTAACTAGTGCAAATTTAATATTTGGATAGCTA 65964 27 100.0 34 ........................... TGTTTACAACATCATGGTTAGAGCAAAACTTGTA 65903 27 100.0 34 ........................... TATATACATAGTTGTTTGTTTCAAAAATTGCCGA 65842 27 100.0 34 ........................... TATATACATAGTTGTTTGTTTCAAAAATTGCCGA 65781 27 100.0 34 ........................... CTTTGGCCATCTTCGGTCTTAAACTTAGCTAAAA 65720 27 100.0 34 ........................... CGGGTAAACAAGTCAGAGTTACTCGCAGCAAATA 65659 27 100.0 34 ........................... TTAGGCGAAACCCCGAGAGCAATTTCAAGCACGA 65598 27 100.0 34 ........................... TAAAACGTTGAAGCTTATTGTCCGCTTTAACGTA 65537 27 100.0 34 ........................... TGTTTACAACATCATGGTTAGAGCAAAACTTGTA 65476 27 100.0 34 ........................... TGGGTACCGAGGGTGGCAATATCTTCCTTATTTA 65415 27 100.0 34 ........................... TATATACATAGTTGTTTGTTTCAAAAATTGCCGA 65354 27 100.0 34 ........................... CGGAATGTATGATAAAAATTGGCTATTTGCCTAA 65293 27 100.0 34 ........................... TATTGATGCAACACCTAGCGCAAGTCAACCTGGA 65232 27 100.0 34 ........................... CAGGGTGGTTTTAAGTACGAGATTGACTACGATA 65171 27 100.0 34 ........................... TGGCGAGAAGCTTATGAAGATCCTAGGAAAAGGA 65110 27 100.0 34 ........................... TATATGCGACTTATTTCTTACGATGAGATTCCAA 65049 27 92.6 34 ...........A.A............. TCGATGGTAACTCTGTAGCTTTTAGAGCCTTTTA 64988 27 74.1 0 ....T..T.T.A.A........A.C.. | ========== ====== ====== ====== =========================== =================================== ================== 33 27 98.9 34 TTTTCTCCACGTATGTGGAGGTGATCC # Left flank : CGTGGTTGTCTGCAGCAAAGGCTATCCAACGCACCCAGCACCTAATGTTAAGATCGGCAAGCTGCCTGAAGGTGCTAATACCTATATCGATTACGCCAATGTTAAAGGTGATTTGGAAAACTTGACGGGTGATGGTGGCCGCTTGTTCATGGTGATTTCGGAAGCTGACAATTTAGTTCAGGCACAAGACAATGTTTATTCTTATTTAAGTAAGCTTGATCTGCTGGATTGCTTCTACCGGCATGATATTGGTAATCGTGCTTTGGGAGATTTTAATATTATATAATGTCTTAACTTAATGACATTGATAAGGCTACCCATATTTTGTTTATTTGTAATCCTGTGAATATAATAGCAATTTAAAATTATTATATGAGCTAGATATATGTAGAAGAATATTTGATATAATTGTGTCGATGATTTGGTTGGGGAAATGCAAACTAAAGAAATTTTGCTTTTTAGTAAATTTAAAATAGCTTAACGATGGGATTCCTTTAGTG # Right flank : TGAAGCACAATATTTTTAAAATAATTGGGCAAGATTTTCTCCAAAAAAGTGGAGCTACATTAACGCAGTGAAGGAAAGATCACAAGAAAAAGTCCCTAATCAGGGCTTTTTTCTTTTCCAAAAACAACATGCTGAAATAGTGTACCGTAAACTGGTAAAATAGATAAGTAAACATAGATCAATTAATAAATAAGGGGGAATAAAATGGCAGATAAAAAATTACTTCTAATAGATGGAAATTCAGTTGCTTTTCGTGCCTTTTATGCTTTGTATCGGCAACTTGATCGCTTTACTAGTCCAGATGGGTTGCACACTAATGCGATTTTTACCTTTAAAAACATGTTGGATGCCATTCTTAAACAAGTAGATCCAACTAATATCTTAGTTGCTTTTGATGCGGGCAAAGTTACTTTCAGAACTGCCATGTATAAAGACTACAAGGGCGGCAGACAGAAGACACCTAGTGAATTGCTTGAACAAATGCCTGTTATTCGTGAAAT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTTTCTCCACGTATGTGGAGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.85%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-6.10,-6.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA //