Array 1 41668-42094 **** Predicted by CRISPRDetect 2.4 *** >NZ_KL543984.1 Methermicoccus shengliensis DSM 18856 BP07DRAFT_scaffold00009.9, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 41668 30 100.0 36 .............................. TACTACATACTCTCCTCGGGTGGCGAGCGCTTGCTC 41734 30 100.0 36 .............................. TTCTCAATGTATACATCTATCTCAGAGACAGAGCAG 41800 30 100.0 36 .............................. CATCTTCATGTCATTCTCTTCGGTGTGGACTTTCTC 41866 30 100.0 35 .............................. TATGCTACTCGTTTCACTTCTCCCCGCCGGCGGCG 41931 30 100.0 38 .............................. GTCACCACTACGTGGCACGTTGCCCTCGTTGTTATCGG 41999 30 100.0 36 .............................. TTCAATGATACATGGAAAGCTTTTTCTATGATGACC 42065 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 7 30 100.0 36 GTTGAAATAAGACCAAAGTGGGATTGAAAG # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCGA # Right flank : GTTCGCCTTCCAGACCGATGGAGGGAAGCATGAAGAACTGGCTGTTTCTTGGAGTTGCAATCTTAGGTGAAGTGGTCGCAACGTCCGCATTGAAGTCAAGTTATGGATTCACGAAACTGGCACCATCAATTGTGGTTGTAGTTGGCTACGCAATCGCGTTTTACTTCCTGTCCCTCGCCCTTAAATCCATACCTGTTGGCATCGCATACGCGGTCTGGGCTGGGGCCGGTATTGCGTTGGTGACAGCTATCGCTTGGTTTGTTTACGGACAAAAGCTCGATGCGTGGGGGTTTGTCGGCATCGGTCTTATTGTTAGTGGGGTCGCTGTGCTGAACTTGCTATCGAAGGCCAGCGCCCACTAATCGCCCGGCATCTAACAATTCATTCAAGTTGAAATAAGACCAAAGTGGGATTGAAAGAAGCAACGGACTGTATGCTAAAAAGCGTAGTCTGGAGTTGAAATAAGACCAAAGTGGGATTGAAAGGTGTTGCCGAACACG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAATAAGACCAAAGTGGGATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.30,-0.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [5.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : NA // Array 2 42482-42711 **** Predicted by CRISPRDetect 2.4 *** >NZ_KL543984.1 Methermicoccus shengliensis DSM 18856 BP07DRAFT_scaffold00009.9, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ==================================== ================== 42482 31 100.0 35 ............................... AAGCAACGGACTGTATGCTAAAAAGCGTAGTCTGG 42548 31 100.0 35 ............................... GTGTTGCCGAACACGAGGATGTTTGAGACTGTTAG 42614 31 96.8 36 G.............................. GCTGAAAAGTGTTCTATGGTGCCGTTAAGGTACTCT 42681 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ==================================== ================== 4 31 99.2 36 AGTTGAAATAAGACCAAAGTGGGATTGAAAG # Left flank : GCCCTCGTTGTTATCGGGTTGAAATAAGACCAAAGTGGGATTGAAAGTTCAATGATACATGGAAAGCTTTTTCTATGATGACCGTTGAAATAAGACCAAAGTGGGATTGAAAGTTCGCCTTCCAGACCGATGGAGGGAAGCATGAAGAACTGGCTGTTTCTTGGAGTTGCAATCTTAGGTGAAGTGGTCGCAACGTCCGCATTGAAGTCAAGTTATGGATTCACGAAACTGGCACCATCAATTGTGGTTGTAGTTGGCTACGCAATCGCGTTTTACTTCCTGTCCCTCGCCCTTAAATCCATACCTGTTGGCATCGCATACGCGGTCTGGGCTGGGGCCGGTATTGCGTTGGTGACAGCTATCGCTTGGTTTGTTTACGGACAAAAGCTCGATGCGTGGGGGTTTGTCGGCATCGGTCTTATTGTTAGTGGGGTCGCTGTGCTGAACTTGCTATCGAAGGCCAGCGCCCACTAATCGCCCGGCATCTAACAATTCATTCA # Right flank : TAAT # Questionable array : NO Score: 8.82 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGTTGAAATAAGACCAAAGTGGGATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.50,-0.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-6.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : NA // Array 1 6392-6226 **** Predicted by CRISPRDetect 2.4 *** >NZ_JONQ01000003.1 Methermicoccus shengliensis DSM 18856 BP07DRAFT_scaffold00012.12_C, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 6391 30 100.0 38 .............................. TAGTATAGCTGGAAGTGTGAGTGAGAGCGGTATAGTAA 6323 30 100.0 38 .............................. CGAGCCAATCTGGGACTTCAAACACGTTTGGTTCGATG 6255 30 93.3 0 ........C.......T............. | ========== ====== ====== ====== ============================== ====================================== ================== 3 30 97.8 38 GTTGAAATAAGACCAAAGTGGGATTGAAAG # Left flank : TCTGCCACATACATGTCCTCCTCTTTGTGGAGTATCGCTGTGAGTACCTCCATCAGCGTTCACCTAATTATGGGTGAGTGTGGCATTACTTAAGTATTGTTCTATGCTCAGTGGTTGATAGCTGTCATCTGTTGATAGCCCACCGCATAGCTGTTTTGAGCATGATGACATCACGCTGTGATCAGAATCAGCAGATGATGTCATCAAAATCAGCACAAAATGGGCAAACCGATAGAGGGTGGGGCACTCAGCACAGAATCAGCAGGTCAGCACCGTTGATGGGATGCTGACTATTCAAGCGACCTTCATGGAGAGATATGCATGGTAGTACAGATACCGCGCTGCTTGTCCATAAAAATGGGAGGGGCTCACGCCCTCCTGTTCCAGTTCAATCCCACAATGGCAGCATCCAGAATGTTCACGACGCCATCTCCGTTGGCATCTCCTGCCATGTACACCACCACCGGAACAGTGGTTGAGCTGGTGGCACCATCATCATA # Right flank : CGCGTGCTCATCTTTTGATGGATTGTGCAACAATTATTCCATCTTTGGAGCTCGTGACCTTGAACTTAACAACTTCACCGATTTTTTTATCCGTCATCACTGCAACACTTCTATTTCTCGCGACACAGAGTTTCTCCCCATGAAGTCTTCCCTCTGCAACTATTCTCGCCCTCGAAATGTCGCCTTTCCTGAATGGGCTCTCTATTCTCCGCCTTCTCTCCATTCCAAAATCCTCAGGCTTGAGTGCCAGCTTCACACCATACTCCTTCTCAAACTCGGCAAGCTTCTCATAGAACTCCTTGAATGACATTCTCTTGCGCACATTTCTTCCGAATTTATACGGGATGTACTTCTGAATGCCCAGAGGGGGATATCTCTTTCCAGCCCCAATTTCAAGGGCAAATTCAATAATCTTCGGAATCTCCTCATCGTTGTAGCCCGGAACCCATACCGGAGCTATCAACAGATCCATCCTGCTGTTTGCAATCATTTCAGCATTC # Questionable array : NO Score: 8.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.89, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAATAAGACCAAAGTGGGATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.50,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA // Array 2 7534-7368 **** Predicted by CRISPRDetect 2.4 *** >NZ_JONQ01000003.1 Methermicoccus shengliensis DSM 18856 BP07DRAFT_scaffold00012.12_C, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 7533 30 100.0 37 .............................. CTAAAATGGCAACAGCTTTTGATATGTCTGCTGAAGA 7466 30 100.0 39 .............................. AGCGACACATACGCGTCAGTGGCACCACGCTCACGGTTG 7397 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 3 30 100.0 38 GTTGAAATAAGACCAAAGTGGGATTGAAAG # Left flank : T # Right flank : CGATGCTTGTTTAGATGGCTGCCTTGCAATAGAGCAGCTCAGTGGTTACAGTAGCTTGGTCGGGGAGAAGCCCACAATGGGTGATGATGGCAGAGACAGCTATAGATACTTGGAAAACTCCTCCTCATCCACCTTTGCGAGCCTTAAAATCCCCTTCAGCGTTCCTATCTTTAGCTCATCGTGCATGGGAACAACAGTCCCCACCTTTCCCTCCGGAGTCATCTTTGATAGCCTCACGTGGCTGCCAGCTCTTCCGCTGATTTCAAACCCCATTCTGTTGCAGAGGATTTTGACTACCTTATCCCCAGAGACCTTCCTAAGCCTTGGCACGGAGTGCCACCTCAAACGTTGTCAGGAGTGTCTTACTTCTCTCCTTCAGCGGAAACTCCTCCAAGTAAAGCTCGGTGGCCTCCTTGAGGTTGCTTACAGCCTCCTCAATGGTCTTGCCCTGGCTCACTGTGCCAACCTCTGGGCACTCTGCCACATACATGTCCTCCTCT # Questionable array : NO Score: 8.67 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAATAAGACCAAAGTGGGATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.50,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [51.7-3.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : NA //