Array 1 36398-37565 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABLUN010000025.1 Pseudomonas aeruginosa strain PASP208 NODE_25_length_80088_cov_50.5927, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 36398 28 100.0 32 ............................ TGTCAGAAGGGATTACCGCGGACCTGGTCGCA 36458 28 100.0 32 ............................ TCAGGCTCATTTCGTTGTCCTCGATGCCCCGG 36518 28 100.0 32 ............................ GGGAGGGCATGTGATGCGAGCAGACGAGTACC 36578 28 100.0 32 ............................ GGGCCCGACGGCTAGTAATTCGCGGAGGATGG 36638 28 100.0 32 ............................ TGTCCGCAGCAGGCCGGTAATCCGGATAACTG 36698 28 100.0 32 ............................ TGTCCGACAACCCGCATAGCATCCCTGAGCAA 36758 28 100.0 32 ............................ AAGGACTCTGATCTCTTGACTCACCATTTCCT 36818 28 100.0 32 ............................ CGCTGCCATCCGGCGCATTTCCCTCTCATAGC 36878 28 100.0 32 ............................ AACATCCAGCCCGAGCTGAGCGATATCCCCCG 36938 28 100.0 32 ............................ TGCTCGCTGATGACCAGCCGCAGCGCATGGTT 36998 28 96.4 32 .......................G.... CGCAAAGCCCCGCAGGACAATGACTTGATATC 37058 28 100.0 32 ............................ AATCCGAGGCGGAGTTCAGCCACTTGGCATAG 37118 28 96.4 32 .....................C...... GCAGTGATCGAGCGCGCACGGTCGCGCAAGAC 37178 28 100.0 32 ............................ AGAAGCGCATCCAGCGATACGAAGATGCACTC 37238 28 100.0 32 ............................ AACCAGCGTGTCGATGCCGAAGCGAAGGCCCG 37298 28 100.0 32 ............................ AGTGAGCACGATCATCATGTCGGCCTGCTGGC 37358 28 100.0 32 ............................ ATCACCGGAGGCCACGGATTCGCTGTAGCTCA 37418 28 100.0 32 ............................ ACCAGCTGCTGCGAGTGCTGGTTCGCGCTGGC 37478 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTCGGGCGA 37538 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 20 28 98.2 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAGAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTA # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGAACTTCGTTGCGGACATGCCGATGAGGTGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 48398-46090 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABLUN010000025.1 Pseudomonas aeruginosa strain PASP208 NODE_25_length_80088_cov_50.5927, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 48397 28 100.0 32 ............................ TGGGGCGAAACCCCTAGGCGCCGGGCTAGCTC 48337 28 100.0 32 ............................ TCCTCAAGTTTTGTCAGCCGAGCCAGCATTTC 48277 28 100.0 32 ............................ TCGATGCCCCGGCGAACCGGGGCGGGGTGGTT 48217 28 100.0 32 ............................ TGATTGCTGCGGCACCTGAACTGCTCTCCATT 48157 28 100.0 32 ............................ TACCCCTCATTAGCCCGGCAAGTCCGGGCATT 48097 28 100.0 32 ............................ ACTCTGCGCCTCGACGTCGGGATCTACGAAAA 48037 28 100.0 32 ............................ AAAATGAAACGGATCAGCTCGCCGACAATCTC 47977 28 100.0 32 ............................ TGGAGCGCTGCACCATTACCCGCGCAGCCCGA 47917 28 100.0 32 ............................ ACCCGAATGCATCACCAACCCACGGCGTGCCC 47857 28 100.0 32 ............................ CTCCAGAGCGGGTCCGACAATAGTCAAAACCC 47797 28 100.0 32 ............................ AGGACTCAGCGAGCCTTCACAAGACGCCTCCA 47737 28 100.0 32 ............................ ATCGAGCAGTGCATCGCCGTCTACAACCAGCT 47677 28 100.0 32 ............................ TGATCGACATCAGGAACGCCCACAGAGGCCGC 47617 28 100.0 32 ............................ ATCACGCCCCAGCCACTTTTCAACCCCGCACT 47557 28 100.0 32 ............................ GGTGTGTGCGGCCAGCTCGGACCCGAACTTGA 47497 28 100.0 32 ............................ AGTCACAGCCGCCGCAGCAGCCAGACCGCCCG 47437 28 100.0 32 ............................ TTAGCGAGTCACCGGGACAAAGGTGACCACGG 47377 28 100.0 32 ............................ TGTCCGAACTCCCATCTGTTGCCCTGATCAAC 47317 28 100.0 32 ............................ AGAAACTGCGGAACCGGAAGTGCATTGATCAA 47257 28 100.0 32 ............................ AAGTTCGTGACTGAGCACCGGCACCTGGGCAT 47197 28 100.0 32 ............................ ATCACGTGTGATTTTCGATGAACGTGATTTTT 47137 28 100.0 32 ............................ GGAACGAAGCGGGTGCGACACGTCGCAACTGC 47077 28 100.0 32 ............................ AGACCATCACACCGGTGACGCTGCACATCGTC 47017 28 100.0 32 ............................ GCATAAAAGTGCCAACGTCGACTTTGTAGCGT 46957 28 100.0 32 ............................ AGGAGGTTCTGGTCCGTCGCCCAGTTCCCGGT 46897 28 100.0 32 ............................ TCGCCCGTCACGGAGCCCGCCGCCTTGGTCAC 46837 28 100.0 32 ............................ AGAATGGACTGCCGAGCGCCGGCCGCCAGTTG 46777 28 100.0 32 ............................ CGGCATTGCTGAATGCCATAGCGGATCTGCTC 46717 28 100.0 32 ............................ GGCATCCCCGAGCGCAAGCTTCCATCCCCGCC 46657 28 100.0 32 ............................ AGCGGCCTGGACCTGGTTCGGCCCGTCCAGGC 46597 28 100.0 32 ............................ CAGAAGCGCCGGCCGTTGGCGAAGAACCAGTA 46537 28 100.0 32 ............................ GATACCTGACGGCCTGGTGCTGGATCACCTGT 46477 28 100.0 32 ............................ TGTCCTTTCAACTCGGTCTGCTCGTAGAGGTT 46417 28 100.0 32 ............................ TTGAGAAGCCGCGGGTGTCTAAGAAACTGGTA 46357 28 100.0 32 ............................ AAGACGTGGCAGGCGGCCTACAACCACGACGA 46297 28 100.0 32 ............................ TGACTGCGGGGCTGCACGACATAGTCGTCGAC 46237 28 100.0 32 ............................ GTATGAAGTGTGTTACCGCGTGGGCGATTCCT 46177 28 100.0 32 ............................ TCGTAGTGGCCCCACGTCGGCGGTAGCTCGCC 46117 28 96.4 0 ...........A................ | ========== ====== ====== ====== ============================ ================================ ================== 39 28 99.9 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTAGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCACAAGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : CTCGAACCCACCTCGGCCACAACAGCCACCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCGCTACCAAACATCCGAATATAAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //