Array 1 2004-281 **** Predicted by CRISPRDetect 2.4 *** >NZ_JGCY01000312.1 Bacteroides fragilis str. 3988T(B)14 gbf3988TB14.contig.313, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ====================================== ================== 2003 35 100.0 34 ................................... TTAAGACTCCGAAGATTGACCGAGGCGGCTCGAT 1934 35 100.0 37 ................................... AAATCAAAATCACCTGCAAAACCAGAAAGCTGGTTGA 1862 35 100.0 33 ................................... TGCTAAAGACGGAACAATATATTATGCTCCGCA 1794 35 100.0 34 ................................... GGTTACTGAAAGGCATTACCAGTTGAGAAATCAT 1725 35 100.0 35 ................................... AATTTAGTTGCGTGGATATTGTTTGCCTACGCAAT 1655 35 100.0 35 ................................... GCTGTCGAAACAGCAAAGAAGCTCGGAATTGACTT 1585 35 100.0 33 ................................... ATTCAGAGATAATTTTCTGATTTTTACAAAAAA 1517 35 100.0 34 ................................... GGATTGCGGAGGCGGCCCTTGGACTCAGAGAAGT 1448 35 100.0 38 ................................... CTCTTGGTTTAGCTCTGTCAGTAACAGAAAGCTTTGAC 1375 35 100.0 35 ................................... GCTCTTGGTGTCATATCCGTTATTATCGGGATATT 1305 35 100.0 37 ................................... AATTGGCGTAACCGGTTTCTGGAACAAACGCAAAGTC 1233 35 100.0 34 ................................... ATTACTTCTATATGCAGTCTCACGGAGAGACAAT 1164 35 100.0 38 ................................... TCAAATTGTCAGATTTGAAAGCTGTTGAAGGTACCAAA 1091 35 100.0 35 ................................... TAGGTTGTTTAGGGCTGCAAAAACTGCGGAATGGT 1021 35 100.0 37 ................................... ATTATTTCACGCACCATGAACTCTATGATGCCATTAT 949 35 100.0 38 ................................... TCTGTCTCGCGGCAAAAAGCTAAATGCTTGTTTGAAGT 876 35 100.0 33 ................................... GAATATACGTGAAAATATGAAAGATTTTCTTGC 808 35 100.0 33 ................................... GGTTACGGAGGCGGCCCTTGGACTCAGAGAAGT 740 35 100.0 33 ................................... AAATATACGTGAAAATATGAAAGATTTTCTTGT 672 35 100.0 35 ................................... GGGAGCAAAACGGAAGAAAATTAATGAAGATAAAG 602 35 100.0 37 ................................... ATTTAGTAAGAGCTAAAAGTATATATCGAACCATTCA 530 35 100.0 38 ................................... TTCTGACGGAAAAATACAAACAAAATAACAACTAATGG 457 35 100.0 37 ................................... TATTTGCCAAAGTCACTCAGGAGTATAAGGCTCGAGT 385 35 100.0 35 ................................... CTTATTTGAATCGGTGTTTAATCGTCAGGAAGGCC 315 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ====================================== ================== 25 35 100.0 35 GTCTTAATCCTTATTATACTGGAATACATCTACAT # Left flank : TAATATCCAAAGCATCTACAATGTAATTTACAACACGAACAAGATGGTTGGGAGATATTTTTTCCGATAAACGAACCGGAAAAGAACATTTTGGCTGGAGGTTAACTCTCTAAATACTATCTTAACTATTACTGTTAATTTTTCACAACGGTAATATGAGGCTTTTCACCGAAATAAACAATGGTAAAAGGGGCTATCCGACTTTTGGGGGGCACTTTGCTTTTTGGACAGCCCCGTAGTATTATCGCCTTTGTGTATTTTTGGTAAGCTATTCCACAGCTTATTAAAATAGTTACCAATAAATTAGTTCTGCCTCTCTTCTTCTTTTCCTGCTTATTGATCATTTTCCCAATGTTAAAAGCAATACCGAAGTCCATGACGATCTTATCCAAGCCGTTATGTCTGAACTTCTCCCCTTATTCTATTTAATGTAGTTAAATTTTTATATTGGAATACATCTACATGCTAATAAGGAAAGTTTGCAGTATTTCTGGGCATTG # Right flank : TATATTGATAATCAGATTATTATAAAATATGTATTCTATCTGTATAAATATATAATAACTTATTATTCAGTTAGATAGATGAAGTGTTGAACTGATTTTCGCAAATGTACTCTTTTTTTCTGTAATTTAAATAAATAATTTGTAGAATATAGAGATATTTAATTGATTATCACTTTGATATGATCGATTCATTATTCGCAAATGCCTGCTTCATTTGTTATATTATAGCCTATTTCGAAAATAAGATTAATCTTATATTTATAATTATCAGATAATAAGTA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTAATCCTTATTATACTGGAATACATCTACAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:71.43%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.00,-1.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [86.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.37 Confidence: LOW] # Array family : NA // Array 1 336-17 **** Predicted by CRISPRDetect 2.4 *** >NZ_JGCY01000066.1 Bacteroides fragilis str. 3988T(B)14 gbf3988TB14.contig.67, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ====================================== ================== 335 35 100.0 34 ................................... ATTACTTCTATATGCAGTCTCACGGAGAGACAAT 266 35 100.0 38 ................................... TCAAATTGTCAGATTTGAAAGCTGTTGAAGGTACCAAA 193 35 100.0 35 ................................... TAGGTTGTTTAGGGCTGCAAAAACTGCGGAATGGT 123 35 100.0 37 ................................... ATTATTTCACGCACCATGAACTCTATGATGCCATTAT 51 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ====================================== ================== 5 35 100.0 36 GTCTTAATCCTTATTATACTGGAATACATCTACAT # Left flank : TGGCGTAACCGGTTTCTGGAACAAACGCAAAGT # Right flank : TGGGAGCAAAACGGAAG # Questionable array : NO Score: 3.06 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTAATCCTTATTATACTGGAATACATCTACAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:71.43%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.00,-1.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [11.7-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.64 Confidence: HIGH] # Array family : NA //