Array 1 348173-350092 **** Predicted by CRISPRDetect 2.4 *** >NZ_WSAP01000001.1 Salmonella enterica subsp. enterica serovar Typhimurium strain B3014 NODE_1_length_495948_cov_63.940890, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 348173 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 348234 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 348295 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 348356 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 348417 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 348478 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 348539 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 348600 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 348661 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 348722 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 348783 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 348844 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 348905 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 348966 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 349027 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 349088 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 349149 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 349210 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 349271 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 349332 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 349393 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 349454 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 349515 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 349576 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 349637 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 349699 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 349760 29 96.6 32 ..........T.................. GGATATGTGAAGTTCAGGTAGCCCATTACGCA 349821 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 349882 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 349943 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 350004 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 350065 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 32 29 98.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 366225-367823 **** Predicted by CRISPRDetect 2.4 *** >NZ_WSAP01000001.1 Salmonella enterica subsp. enterica serovar Typhimurium strain B3014 NODE_1_length_495948_cov_63.940890, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 366225 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 366286 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 366347 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 366408 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 366469 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 366531 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 366592 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 366653 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 366714 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 366775 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 366836 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 366897 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 366958 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 367019 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 367080 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 367142 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 367245 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 367306 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 367367 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 367428 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 367489 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 367550 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 367611 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 367672 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 367733 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 367794 29 96.6 0 A............................ | A [367820] ========== ====== ====== ====== ============================= ========================================================================== ================== 26 29 99.7 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.10, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //