Array 1 23510-23264 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV815468.1 Neisseria sp. HMSC070F02 Scaffold1461, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 23509 36 88.9 30 NNNN................................ ACAAATCAATACCATGAAAACCCCATGCGC 23443 36 100.0 30 .................................... CGTAACCGGCAAGGCTTATTTGTCCAACGA 23377 36 100.0 42 .................................... GCCCACACGCCGCCTAGCACGCCGCCTAGCACGCCGCCGAGA 23299 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================== ================== 4 36 97.2 34 GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAGCTCCCATTCTCATTTCGCAGTGCTACAATGGTCAGATTATAATAACGTTGAGCGCGTGAGTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAATCGTAACCGGCAAGGCTTATTTGTCCAACGAGTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAATCTGGAAGACTGGTAAGAAACGAGATGCACAGTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAATCGATTTACCACCCATAAAACCACCTCAAAAGTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAATTAATTTGCGTTTCGTGTCGCTCATAAACCCGTTGTAGCTCCCATTCTCATTTCGCAGTGCTACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : GGGTATGAAGCGGTTGGCTGTGCTCCCATAGTTGTAGCTCCCATTCTCATTTCGCAGTGCTACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAGCTCCCATTCTCATTTCGCAGTGCTACAATAACCCATTACGCCACAAGTATTTCACAGCGGTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAATACCCCAACGGGAAATCCTTATTCTATAAGGATTTCCCGTTTTATTTAGTCTGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACATAGTCTATTGTGGTGTTTTTGCAACGAATCGCGGCCTT # Questionable array : NO Score: 5.72 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.26%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,-0.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.05,4.5 Confidence: MEDIUM] # Array family : II-C [Matched known repeat from this family], // Array 2 23903-23669 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV815468.1 Neisseria sp. HMSC070F02 Scaffold1461, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 23902 36 100.0 30 .................................... CGTAACCGGCAAGGCTTATTTGTCCAACGA 23836 36 100.0 30 .................................... CTGGAAGACTGGTAAGAAACGAGATGCACA 23770 36 100.0 30 .................................... CGATTTACCACCCATAAAACCACCTCAAAA 23704 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 4 36 100.0 30 GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Left flank : AAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTGGTTGTAGCGCCCATTCTCATTTCGCAGTGCTACAATGGACGGCGGTTCTAAAATATGAAAACTCAAGTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAATAAACTCAACGCATCTAACATAGTTCACACTGTTGTAGCTCCCATTCTCATTTCGCAGTGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAGCTCCCATTCTCATTTCGCAGTGCTACAATGGTCAGATTATAATAACGTTGAGCGCGTGA # Right flank : TAATTTGCGTTTCGTGTCGCTCATAAACCCGTTGTAGCTCCCATTCTCATTTCGCAGTGCTACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAGCTCCCATTCTCATTTCGCAGTGCTACAATACAAATCAATACCATGAAAACCCCATGCGCGTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAATCGTAACCGGCAAGGCTTATTTGTCCAACGAGTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAATGCCCACACGCCGCCTAGCACGCCGCCTAGCACGCCGCCGAGAGTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAATGGGTATGAAGCGGTTGGCTGTGCTCCCATAGTTGTAGCTCCCATTCTCATTTCGCAGTGCTACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.26%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.30,-1.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 3 24227-24059 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV815468.1 Neisseria sp. HMSC070F02 Scaffold1461, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 24226 36 97.2 30 ........G........................... GGACGGCGGTTCTAAAATATGAAAACTCAA 24160 36 100.0 30 .................................... AAACTCAACGCATCTAACATAGTTCACACT 24094 36 83.3 0 ..............................NNNNNN | ========== ====== ====== ====== ==================================== ============================== ================== 3 36 93.5 30 GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Left flank : TTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCT # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAGCTCCCATTCTCATTTCGCAGTGCTACAATGGTCAGATTATAATAACGTTGAGCGCGTGAGTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAATCGTAACCGGCAAGGCTTATTTGTCCAACGAGTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAATCTGGAAGACTGGTAAGAAACGAGATGCACAGTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAATCGATTTACCACCCATAAAACCACCTCAAAAGTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAATTAATTTGCGTTTCGTGTCGCTCATAAACCCGTTGTAGCTCCCATTCTCATTTCGCAGTGCTACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 5.04 # Score Detail : 1:0, 2:3, 3:0, 4:0.68, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.18 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //