Array 1 2601-21 **** Predicted by CRISPRDetect 2.4 *** >NZ_LJGO01000076.1 Acidovorax avenae strain T10_61 contig076, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 2600 32 100.0 34 ................................ TACGCCTTGGCCTGCTACTGTGGAGGGTACTCGG 2534 32 100.0 35 ................................ AGCACGTAGTGGTCGGCCGTTTCGATCTTGAACGA 2467 32 100.0 34 ................................ CGGTACTTGCGCTCGAATGCCTCACGTTCTTTGG 2401 32 100.0 36 ................................ AATGCGTGGCCTTTGCCACAGCCCGCGCAACCGCGC 2333 32 100.0 35 ................................ TCTATACGCATCTGAGAAAAAACAGAAAAGAGCCC 2266 32 100.0 35 ................................ GAGACCGACAAGACCGTGCCCAAGGACGAGAAACG 2199 32 100.0 35 ................................ CGCAAACCTGGCAATGGCTGACGCATACGGTGCGT 2132 32 100.0 35 ................................ TACGTGACCGCGGCTCTCAACGTGCGCGAGTGCTC 2065 32 100.0 35 ................................ CGCAATGGGCGATCTGAAGGCAACGGAGTGCGCAC 1998 32 100.0 34 ................................ GGCCTTTCTCAGCCGCACCCCACCGTGTCCGGAT 1932 32 100.0 35 ................................ AGTGCCTCGTCGATCCGTCCCGATGCGAAGAAGCA 1865 32 100.0 35 ................................ CAGATCGGTGCCAGCGCACGGAGCACGCGTGCTTG 1798 32 100.0 33 ................................ GTTGAGCATGGCGGACTGCAGCGCGCCCAGATA 1733 32 100.0 34 ................................ CCAGGCTCGCCGGGCTGTCGGTAACGCCCAGGCC 1667 32 100.0 34 ................................ ACGCACATAGCGCCAGTGATGACGGGGACAGCAA 1601 32 100.0 34 ................................ GTACCACCACCGACCAAGAAGGCCAACGTCCCGG 1535 32 100.0 35 ................................ ACCGTACCACCCGAGCAGGACGAAAATCGCAATCC 1468 32 100.0 34 ................................ CGGCCGACGAATCGAGCGCGTGCCGCACCGTACC 1402 32 100.0 35 ................................ GGCTGACGGCAAGACCATTTGTTGTGCTGGCATGG 1335 32 100.0 35 ................................ GTGTACTACAACCAGGATTTGGGATGGGTGATCTA 1268 32 100.0 37 ................................ CGGCGCGGGCAAGGCCTCGCTTCCAGGCCGTGCTGGC 1199 32 100.0 35 ................................ GATACGCCAGGGTCCCCGGGTTCGCACGAAACCTG 1132 32 100.0 35 ................................ CCGCGGTAGTGGACGACACGGACCTGCGAGCTCAC 1065 32 100.0 35 ................................ AGCACGCGGGAGATCGCGAGTCATTGCCGCGTGAG 998 32 100.0 37 ................................ TCGCCTGTGAGGTGGACCTGCCCGTCACGGAAGTGCA 929 32 100.0 37 ................................ GGCGCGAGCGGCGGCACGCCCACCACGCTGCGCTGGC 860 32 100.0 36 ................................ CACACGTTCAGGGACGCGGACCTGCAGGCCGTGCTT 792 32 100.0 35 ................................ ACCGTGGTAGGTGTCGTCGAACACGGTCTTCCCGG 725 32 100.0 35 ................................ CACGCATGCTCCCGCCTTGCGGGCGACCACGATGC 658 32 100.0 35 ................................ GCCGCAACCGCGATGCACATGAGCACTCGCGATCA 591 32 100.0 36 ................................ GTTGTCCAGGAACGAGAGCCACTGCGCGGCCTCGGC 523 32 100.0 34 ................................ CGACGATGCCAGCCGGATCCAGCAGGTGTCGTTG 457 32 100.0 35 ................................ GTCAGCGAGTTTTCCTCCACGATCCAACCGCTGTT 390 32 100.0 34 ................................ GACAACGCGGTGCCCGTGCAGTGGCGCCGCGACC 324 32 100.0 36 ................................ TACTTCACCGCGGCCGACGGCGTGCTGGGTGAGTCC 256 32 100.0 34 ................................ TACGAATGATCCGGTGGGCGCTTGCGGTCGTTGC 190 32 96.9 38 A............................... GAGGGCGTGCTGTACCGTGGGCGTACCGGCAGCGCACC 120 32 100.0 36 ................................ ACCGGCGAGGACCGTGTATGGCGGCACATCGTCAAC 52 32 96.9 0 .....A.......................... | ========== ====== ====== ====== ================================ ====================================== ================== 39 32 99.8 35 GTCGCGCCCCGCGTGGGCGCGTGGGTTGAAAC # Left flank : CTCGTCAGCTACGATGTCCGCTCCCAGGACAAGGCCGGCGCCCGCCGGCTGCGCCACATCGCCAAGGCCTGCCTGGATTTTGGCCAGCGCGTGCAGTTCTCGGTGTTCGAGATCGAAGTGGATGCCGCCCAGTGGACCGCCCTGAAGGCCCGGCTGCAGCAGACCATCGACCCCGCGCAGGACAGCCTGCGGTTCTACTACCTGGGCAACGACTGGCAGCGCAAGGTGGAGCACGTGGGCGCCAAGCCGGTACTGGATTTGAACGGGCCGCTGGTGCTGTAGCGCCTCTCGTTCCCCCTCCTCTTCATTCCTGCAACCATCCGGCGCGAACCGGAAGCGACTGCCTGCGCCCAGGGGAGGTTCGCAGCGTGGCAAGTGATTGATGTGCAAGGGAATTGTGGGACCGTGAGCGGCTTTGCCCGGCAAAAGCCCCGCTCTGTGGGCAGGTTCGCGCGCGTTGGCGGAAAAGTGGAGGAATGGCGCGGGGTTATAAAGACGCC # Right flank : CCATGCGTTTCAGTGCTGCTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCCGCGTGGGCGCGTGGGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGCCCCGCGTGGGCGCGTGGGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.90,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [16.7-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 33965-32183 **** Predicted by CRISPRDetect 2.4 *** >NZ_LJGO01000094.1 Acidovorax avenae strain T10_61 contig094, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ======================================= ================== 33964 32 100.0 35 ................................ AGGCAAATCGGCCTCTGGATGGATCAAAGTAGACC 33897 32 100.0 35 ................................ TTCCAGTTCTGCGCCCTGAGCCAGCAGGCGCGCAT 33830 32 100.0 35 ................................ TACAGCATGCGTGCAGCCATCGGCGGGGGCGCAGT 33763 32 100.0 35 ................................ GTGTGCAGCGCGATCCCGTGCCTGTGGCGTGCGTG 33696 32 100.0 35 ................................ AATCCGAATGCTGTTATGAACGGGCTTGCAGACTC 33629 32 100.0 36 ................................ GCCCGGATCGCCGCCGGGCTGAACCCCGTCATGGCC 33561 32 100.0 33 ................................ TGGTGGTGGTATTTGGCAGGAGGCGGTTGCTGT 33496 32 100.0 34 ................................ ACGGGACAGAGGTACTACAGTCAGGACTGTGCCG 33430 32 100.0 36 ................................ TTTCCTTGCCGTCCATAAACACTGCCGGCACGTTAG 33362 32 100.0 36 ................................ TTTCCTTGCCGTCCATAAACACTGCCGGCACGTTAG 33294 32 100.0 35 ................................ GACGCGACCGTCTCCATTGCGGAGGCCGTGAAGCA 33227 32 100.0 36 ................................ GGCGAGCAGCATCAGCAACCGCCCGCAGTCCGAGAG 33159 32 100.0 34 ................................ GATCCCGATCGCCCGCTCCACCTTCCCCCTAGAA 33093 32 100.0 35 ................................ TTGAAGGGCTTGGCGTGCTCGCGCATGTAGCGGTC 33026 32 100.0 36 ................................ TTCTCCATGTCCCAGGCGTACACCTCGATCTCGGAC 32958 32 100.0 35 ................................ TTCGTCAGCGAGAAGCCACCGGGCCCGGCGAGCAG 32891 32 100.0 36 ................................ GCCCGCACCTACACGCTGGGCCTGCGGAAGTCGGAC 32823 32 100.0 34 ................................ TAACCATGGTCCAAACAAACCTGCTGCTCGTCCT 32757 32 100.0 35 ................................ CCGCCGATGGTGTCGGCCTCAAAGAACGTGCTGCA 32690 32 100.0 38 ................................ AGGATGACACCGCGCCAGTGCTCCACGGCCGGATCCAC 32620 32 100.0 39 ................................ TTCTCGATGCGGCCACCGGACTTGTGCCGCCACTCCCAG 32549 32 100.0 35 ................................ GCGGCTGCGTCGCAGCCCGATGTCACGGAAACCGT 32482 32 93.8 34 .............A.A................ TGCATTCACATCGGCCCGCCCATCGTGGCGGGAT 32416 32 100.0 36 ................................ GAGCACAAGTCGCTCAACGTCCGCCTGCGCGCGGCC 32348 32 90.6 36 ..........C...T.............G... ATGGGTGGGGATCGTGAACTGGCGATGCTCTCGGGC 32280 32 93.8 35 ....................TC.......... ATGGCCAGCGGCAAGACCACGCCGCCCCAGCACCT 32213 31 78.1 0 ..A..A...-..A........C..A.....G. | ========== ====== ====== ====== ================================ ======================================= ================== 27 32 98.4 35 GTCGCGCCCTGTGCGGGCGCGTGGGTTGAAAC # Left flank : ACGTGGTGCTGAACGTGGCCTTCGGCCAGCCCACCATGGCGGTGGACACGCACATCTTCCGCGTCAGCAACCGCACGGGCCTCGCCCCCGGCAAGAACCCGCTGGCCGTGGAAATGCAGTTGCTGAAACGCGTGCCCGCCGAATATGCCGTGGATTCGCACCACTGGCTCATCCTGCTGGGCCGCTACGTCTGCCAGGCGAGAAAGCCGCGTTGCTGGGAATGCGTGGTGGCGCCGTGGTGTGATTACCAGCCGAAGACGCCGGCGCCCTGAGGGCGGGCCCTTCTGCTCCCTCCCTTTCCTTTCTTCTTTCTTTTGCCGGGCGTTGCGAACCCCGAGTGACCGGCTTGTCCGCCTGGGGTTCGCGCGGGGGCAAGTGGTTGAGGGAAAAGGGAATTTTTCCTGGGTGGCAGACGGGGCGCGCAGGCTGCGGGTCGGGTGGGCGGGGTTCGCGGATGCGTGGGAGGAATGGCTGGAGTGGCGCGGGTTTATAAAGGTGCC # Right flank : AACGAGGGGCATAGCGGCAAGATGTTCGTCGTCGATCCACGCCCCGGGCGAGCATGGAATGCAGTCAACGCCTCGACCGGCCCTGCCATATCACGCGGCATCGTTGCACATGCACAGGCGCTCTCACATCAAAGGCCGATTGACATCCATCCGCATCGCCACCCGCCGCTCCACCGGCAACCCATGGGCAGCCTCCACGTCGATCACCCCCTGCAGCCGCGGCCCGGGCGGCGAGACCGGGCGGAACCCCAGCCTCGCATAGGCCGGCGCGCTCCACGGCAGGTCGGCGAAGGTGGTCAGCGTCAGCGCCACCAGGCCCTGCGCCGCGGCATACGCCTGCGCGGCCAGGATAAGCCTCGTGCCGATGCCCCTGCGCTGCCAGTCCGCGTGCACCGACAGTTCCCAGAGATGCAGTTCCTGTCCGAAGGCCTCGGCGTCCAGGAAGCCGACCAGGTGGCCGGGCGCTGCCTCGGCCACCCAGACGGCGCCCCGCAGGATGA # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCTGTGCGGGCGCGTGGGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGCCCTGTGCGGGCGCGTGGGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [14-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //