Array 1 191-8 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_MMYP01000002.1 Mycobacterium tuberculosis strain 01-R1622 01-R1622_contig2, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence                      	Spacer_Sequence                      	Insertion/Deletion
==========	======	======	======	=====================================	=====================================	==================
       190	    37	  97.3	    37	T....................................	CCTTCGACGCCGGATTCGTGATCTCTTCCCGCGGATA	
       116	    37	 100.0	    35	.....................................	TGCCCCGGCGTTTAGCGATCACAACACCAACTAAT  	
        44	    37	 100.0	     0	.....................................	|                                    	
==========	======	======	======	=====================================	=====================================	==================
         3	    37	  99.1	    36	GGTCGTCAGACCCAAAACCCCGAGAGGGGACGGAAAC	                                     	       

# Left flank :   CATCCGGCGCCTCAGCTCAGC
# Right flank :  CCAGCGAA

# Questionable array : NO	 Score: 5.31
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GGTCGTCAGACCCAAAACCCCGAGAGGGGACGGAAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     R [2,12] Score: 0.37/0.37
# 	Reference repeat match prediction:         NA 
# 	Secondary Structural analysis prediction:  R [-6.40,-7.70] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [0-1] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [5.0-11.7]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0.41,0.74   Confidence: LOW] 

# Array family : NA
//


Array 1 3100960-3100188 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_MMYP01000001.1 Mycobacterium tuberculosis strain 01-R1622 01-R1622_contig1, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence                         	Insertion/Deletion
==========	======	======	======	====================================	========================================	==================
   3100959	    36	 100.0	    37	....................................	ATTTTGAGCGCGAACTCGTCCACAGTCCCCCTTTCAG   	
   3100886	    36	 100.0	    35	....................................	GCCCCGTGGATGGCGGATGCGTTGTGCGCGCAAGT     	
   3100815	    36	 100.0	    40	....................................	CCGACGATGGCCAGTAAATCGGCGTGGGTAACCGATCCGG	
   3100739	    36	 100.0	    38	....................................	TAGTACGCCATCTGTGCCTCATACAGGTCCAGTGCCCT  	
   3100665	    36	 100.0	    35	....................................	CTGACGGCACGGAGCTTTCCGGCTTCTATCAGGTA     	
   3100594	    36	 100.0	    36	....................................	CCTCATGGTGGGACATGGACGAGCGCGACTATCGGG    	
   3100522	    36	  97.2	    37	......G.............................	TGGACGCAGAATCGCACCGGGTGCGGGAGGTGCAGCA   	
   3100449	    36	 100.0	    40	....................................	GCATATCGCCCGCCACACCACAGCCACGCTACTGCTCCAT	
   3100373	    36	  97.2	    40	...C................................	ACACCGCCGATGACAGCTATGTCCGAGTGACATCCTCCCA	
   3100297	    36	  97.2	    38	..................A.................	TTGAACCGCCCTTCGCGCGGTGTTTCGGCCGTGCCCGA  	
   3100223	    36	 100.0	     0	....................................	|                                       	
==========	======	======	======	====================================	========================================	==================
        11	    36	  99.2	    38	GTCGTCAGACCCAAAACCCCGAGAGGGGACGGAAAC	                                        	       

# Left flank :   AGACAATCTTATTCTCG
# Right flank :  TACGACGACTGGGTCGCCACCGCGTCTGTTGACCGGCATTCAGGATGAGCATGATGGCGGCGTTGACGGTGAGGACGTTTGGTCATGAAATGACCCCGCCGGGAGATGTCCGGCGGGGTCGGTGGTGTTCGGGGTGTCGGTGTGGTGTTCAGTCTGCCGTGACTTCGGCGATGGCGGTGCGGGTGGTGGATTCGTCGACGATGGCCTTGTCGGCGGCGAAGGCGGCGACGAGGGCTTGCAGGGCGAGGTTGTTGACCGCGCGGGGGTAGCCCCGGCTGGTCTGGTGGATCAACCCGATGGCGTCGTCGGAGAACAGGGCATCGTCGCGTCCGGCTAGCTTGAGGTGGTGGCGTAGGTAGCTGCCGGTGTTGGTGTCGGTCATGGGCGGCATGGCATATCGGAGTCCGATGCGCTGGTCAAGCGCGGCGAGCACGCCGAGTTTCATCCGCCGCCGCAGGGTGGGTTGGCCGATGAGCAGGCAGGCGAACGGGCTTGACGAG

# Questionable array : NO	 Score: 6.22
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTCGTCAGACCCAAAACCCCGAGAGGGGACGGAAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     R [2,12] Score: 0.37/0.37
# 	Reference repeat match prediction:         NA 
# 	Secondary Structural analysis prediction:  R [-6.40,-7.70] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      R [2-0] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: F [38.3-18.3]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0.27,1.15   Confidence: MEDIUM] 

# Array family : NA
//