Array 1 873-50 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYKM01000002.1 Salmonella enterica subsp. enterica serovar Mbandaka strain CVM43203 CVM43203_contig_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 872 29 69.0 32 T..CC.A..A..A.T.G........C... AAAGGCCAGATCCGCCAAGGCTGGGGGTTTGT 811 29 75.9 32 TG..C.......G...G.....A..C... AGCCGGCCGGGAAACAACCGGATTAACGCGGG 750 29 86.2 32 ....C....C.C..G.............. CCAGTAACGCTGTCGTGATAATTTTGGGCGCC 689 29 100.0 32 ............................. CTTAATGCTTTTTCGTCCGCCCATAGAAATAA 628 29 96.6 33 ...................A......... GTATCAAAGGTCATCAGGTGTTCGCCTTTCAGC 566 29 96.6 32 ............................A GCAGATTGGTATCTGGTACGACGACTGCCGCC 505 29 100.0 32 ............................. ACTGTTAAAATGCTTCAGGACGGTGAAGTAAA 444 29 100.0 32 ............................. TCCACTGTACCGCCGACAGGACTTTTTAACGT 383 29 100.0 32 ............................. CGCAGGCGCTGGACGCGCTGCACAGACAGTCC 322 29 100.0 32 ............................. GTGCGGTCGAGGTGGCGAGGTTGATAGCAGTA 261 29 100.0 32 ............................. CGAATATGTTGATCGGGATTCTGGCCGCACTG 200 29 100.0 32 ............................. CGTTTATCGCTCTGAGAGTGGCGCTCGTTACT 139 29 100.0 32 ............................. GCGCTGACCATGATTGCAGTCAGGGTCGGCAT 78 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 14 29 94.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : AAGCCGGAGGGAATGTTTAAAAGAATGAGAAAAAAAAA # Right flank : GGGGGAATGATGAAACGAATTAGTAAAAACAAAGTGTTCCCCGCGCCAGC # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.73, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-22] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.24 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1-211 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYKM01000033.1 Salmonella enterica subsp. enterica serovar Mbandaka strain CVM43203 CVM43203_contig_33, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1 29 100.0 32 ............................. CCAGTAACGCTGGCGTGATAATTTTGGTCGCC 62 29 100.0 32 ............................. CAATACGACTGGACTGGATTTGATTCATTATC 123 29 100.0 32 ............................. TACCAACAATTCAGCGTTACGCCAACGGTAAC 184 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 4 29 95.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : | # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGAGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 5.65 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //