Array 1 111234-114172 **** Predicted by CRISPRDetect 2.4 *** >NZ_CEEZ01000005.1 Streptococcus suis strain LS5J, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 111234 36 100.0 30 .................................... TATTTGTATTCGAGACCGTGCAAGACCTCA 111300 36 100.0 30 .................................... ATGGTATAGGACGATCCTGTCGGGTATACC 111366 36 100.0 30 .................................... CGCCTCACGCTTTGTGATTTCCTCTGTCTT 111432 36 100.0 30 .................................... TTCGGCTCTAACCCTCCGCCTTGCATGGTT 111498 36 100.0 30 .................................... ACGCTCTAAACAACGTGAGCGAAACGTGCT 111564 36 100.0 30 .................................... AATCTGTTTCATACAACCAAATACAACTTC 111630 36 100.0 30 .................................... TCCCTGTCCAAGAAATCGGACAAGACCTGA 111696 36 100.0 30 .................................... TCTGTTTGGAGTATGGATTTACGACTAAAC 111762 36 100.0 30 .................................... TTGTGAAACAGCTTAGAGAACAGACTTTTG 111828 36 100.0 30 .................................... GATGTAGCAGCAGCCAATGCACTTGATAAT 111894 36 100.0 30 .................................... TTTTAAGACCTTTAATGTTTTCTAGCGCAT 111960 36 100.0 30 .................................... CTTGTCAAAAGCAGACATTATCCGTATCAT 112026 36 100.0 30 .................................... AATTTTACAATATCAACATCAACAGGTATT 112092 36 100.0 30 .................................... GAAAGACTTGTAGGTTGTTATGACAAGACA 112158 36 100.0 30 .................................... TGTAACACAAGTGCTTGTAATAGGTCTTTG 112224 36 100.0 30 .................................... TATACTTGTGTAAGGCTGACAATACAGGTA 112290 36 100.0 30 .................................... AAGTCTATAACCATTGAATAATTGAGTATA 112356 36 100.0 30 .................................... ACAACTGTATTATATGATATGTTCAAATTA 112422 36 100.0 30 .................................... TTACTGACAAGTATTGTAGATATGCAAGAA 112488 36 100.0 30 .................................... TTCAAGTAATGTCACGTATTCGTGAGCATT 112554 36 100.0 30 .................................... TGGCTGAGCTTAGCAAGCTACTTGGAAAGC 112620 36 100.0 30 .................................... TGCGGCCATACGTTGACGGCGACAAAATCC 112686 36 100.0 30 .................................... TTACAATACTATAGGAGACTTATGGGATGC 112752 36 100.0 30 .................................... AAGTTTGAATTTGTTTTACCAAGGAACACA 112818 36 100.0 30 .................................... TCAGCTACAGAGACACCTCTCAGACCTCTT 112884 36 100.0 30 .................................... ACCGTGAAGCTCCAAATGGTGTTTGGGGCG 112950 36 100.0 30 .................................... CGTTAAATGAAATCAAAGGTGACTCAAAAG 113016 36 100.0 30 .................................... ATGAGATATCTTATCCCACGCTCTAAACTT 113082 36 100.0 30 .................................... AATATTTAAATCTATGTTTACCTCATTTTG 113148 36 100.0 30 .................................... GGTATTACGGCAAGGACCATGAGCGGTACT 113214 36 100.0 30 .................................... TTGACATAAGCTGCAAGGTTGGTCTGTATG 113280 36 100.0 30 .................................... GACTTCTTAGCTGTCCACACTGATGTAATT 113346 36 100.0 30 .................................... TATACAAATATATTATGATTCCAAGGAAAT 113412 36 100.0 30 .................................... TCGTTGATAATCTCACCCAGCTCTCGGCCC 113478 36 100.0 30 .................................... AATGAATTTTGCTTTTAGTGAATTAGAGGG 113544 36 100.0 30 .................................... AATTATCAGAAAAATAATTGTCACGCTCTA 113610 36 100.0 30 .................................... GGTATTTTATGTATAAATGACAGGTGGTTC 113676 36 100.0 29 .................................... CTAACCTTGTCTTTGAGATTGCTGATAAT 113741 36 100.0 30 .................................... CTAAGGTAGAATACATTGACGGTTCTGTTA 113807 36 100.0 30 .................................... AACTGCGATCAGACCAAGCCACTTCTGCCA 113873 36 100.0 30 .................................... TTCAATATTAAGTAACGCTGAAAATACCTC 113939 36 100.0 30 .................................... TATTGTTTAGGGCTTTAATGCAGTCTTCTA 114005 36 100.0 30 .................................... GGCTACCCACACAATAAATGCTGTCAGAAA 114071 36 100.0 30 .................................... TAGAGCAGACTGAGCTACTTTCAACTGCTC 114137 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 45 36 100.0 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTTCAAAAC # Left flank : GAAAAACCAGAAGTGAAATCAATTATTGAAAAATTAGCAAATTCTATTACTGAACTAATCTCTTATGAATGTCTAGAGAATGAGCTTGATTTGGAGTATGATGAGATTACGGTTTTGGAGTTGATAAAGGCGTTAGGGGTCAAAATTGAAACTATCAGTGATACGATTTTTGATAAAATTTTTGAGATTTTACAAGTTTATCAATTTTTGAATAAGAAGAGATTTCTTGTCTTTATCAATGTGTTATCTTATTTGACGGTGGATGAAATTCAGAAAACTAGGGAGTATATTGAACTTTCCAATATGGATGTTCTTTTTCTAGAACCGAGAAAAAGAAAAGATTTCCCTCAGTATGTTTTGGATAAAGACTATTTCTTACTATCGGAAAATATGGTAAAATAAATACATACAGTACAAATATTAGAAACTATTCGAAACTGAAGTCTGGCTGAGACGAATGGCGCGATTACGAGATTTTGTGACAAAAAATAGTCTACGAG # Right flank : CCGTTAAAAGACAAATTGATAGGGTAGTTAGTTTTAGAGTTGTGTTGCTCTAAAAAGTTCTTTTAATTCTTAAAAGCAATGTAGCAAAAATATTTAAGTGTCAAAAAGAAAGGGGATTGTAGATGGATTCAAAATCAATTATTATAACGTCTGGTTATAACAGTAGTAGTGAATATTTTAACTTTAATCATCAAAATAATTGAAAGTAAAAAGTATAGATGAATTTGATTTAAGCTTCATTTTTTTAGGATAAAAACTAGTGCACAGACAAGTAATTCTCTACCATAAACTTTCAAAGTTAAAATGATGATTAACAACATCCAATTTTCCTCCAAGATTTCTAACTGACTCTTGTCCCACCCCCTTTTCCATGCTATACTAAATATTATCGTTTTACTTCAAAGGAGACAAAAATGACAAACCTAAAAGAGCAGGTTGGGATTAAGGCGGCGGAATTTGTGACGGACGGGATGATTGTTGGGCTTGGAACTGGTTCGACG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTTCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.80,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [56.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.27 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //