Array 1 55397-55688 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAUXM010000023.1 Clostridioides difficile strain HU74 NODE_23_length_58061_cov_23.603, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 55397 29 100.0 39 ............................. AAAATCAGACTCTTGTTTGTATTGATGAAGGTGGGATAA 55465 29 100.0 36 ............................. CTCGGTATACTTCAAGGCTTCATTTGTCAGTTGCAT 55530 29 100.0 37 ............................. GGTTATGGCTTTGATTTTGGTGACAAGTTGCTTGAAA 55596 29 100.0 36 ............................. TTTTGTGATGATAGAAGTGGATATATGTACTTGACT 55661 28 89.7 0 ....................-..T....A | ========== ====== ====== ====== ============================= ======================================= ================== 5 29 97.9 37 GTTTTATATTAACTATGTGGTATGTAAAT # Left flank : TAATTCATTTTTTAATACTCCTTGTAATTTTAATTTGTTTTGTTTTAGTTTTTCTTCTTTTAATAAACTTATTAATTCATCAAATGCTGATAATGTTCTCTTTGATTTTGATTTTTTATTATATCTCTTCTGTTTTTAATTTTTTTCTTATGAAGGCTGACTTAGTATCCATAAGAGCACCATCCTTTGAGTTAGTTTGAATTAATTACTTAATTATATTTTATAACAAGTGAAAAAAATTTTCAGAGTTTATTAAAAAAATGTTTATTTTTATTAAATTATAAATTGGTACAAATATTCAAAAATAATCTATTTATGATATAATAAAAATATAAGAGTTTTGCAGCGTGCGATTTTTCTATTTAAGTATAGTTTAACAGTTGATACATAAGGCATTGAGAGCGTATGATAAGTGTTATCAATTGCACGACTATCCGCGCACTGCAAATTTAAGAGAGTTGTATATATGTAAGTATTAGAAATGCTAAGTTTATTTTGGG # Right flank : ATTAAAAATACTAAAAACATTTACTTAAATAGTAGGTGTTTTTCAAATTAAAAGGACGTAATAATATTATAAAAAACAATATATAGGAAAAATATGTAAATACATATGTTATAATATTTTTAGCAAGAAGATGGAATCTACAATTTATAGAGTGGAGTTCATGTATCAAAAAATTATCCTCACAACATTGATAAGGGAGGTGAATATAGTAAGTACTTACTCAAAAGGTAGGTATTTTTTTATACAAAAAATCAAAGGAAGTGAATTTATGGTAAGAAAACTGCGATGTAGTATTCAAAAATATTTTAGAAAGGAAGTGATAATTTGAGAATAGACATATACCTAAAAAGTGAAAAAGAAAAAATAGATTTCCATTTTCCAGTTAATCCACAAGATTCTTTATCTATTAAAAAAGAAAAAAGATTTGAAACTGTTGATATAGTGAATTTAGGTGAATTTGATATTAAAAAATGAGGGGGGAAGATAAGAGAAGTCTCATT # Questionable array : NO Score: 5.96 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGTGGTATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.50,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 16514-16156 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAUXM010000027.1 Clostridioides difficile strain HU74 NODE_27_length_49605_cov_30.0138, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 16513 29 100.0 36 ............................. GCTATTTTTAGTGATGATTATACTAAATTACAGGAT 16448 29 100.0 37 ............................. CTAAGATGGAAAAAACAAAAAGTGAAGTGCCGATTCT 16382 29 100.0 37 ............................. TAGTGCAAAAATACAATTCTTGGATGTAGATAAGCTA 16316 29 100.0 37 ............................. AAAGAAGCGATAGCTTTGAAAGATAATAAGAGGATAA 16250 29 100.0 37 ............................. CACTTAATCGTTCTGTAAGAGATGTTTACGAGACTGA 16184 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ===================================== ================== 6 29 100.0 37 GTTTACACACTATATAGTCATTATAAAAC # Left flank : TAATTTGCTTATACTCATTTTCCCTTAATTCAACTTTTTCCTCTTCAATATTTATTTTTTCACTTAACTCTTTAAAAGCTGGATATATAATATTTTTACACTCTTTTATGTCTAGCCCTAGTGTCTTCATTGCAATATCAATTGCTAAGATTTTATCTCCTTTGGTTTCTTTATAAATATTAGTCAGATTTAATTCTTTTCCATTAATATTTATAAATAAATCATCATTATCAACTGTATCTGCTAATGTAGGTGTCCCACAACTTGAACAAAATTTACCTACCCCTGTAATTTCTGCTCCACAACTTGAACAAAACATAACAATCACCCCATATAATATTTTATAGCATTATTATACTATATAAGTAAAATTTTTACATTATAATCACATCCTTTCAATAAAAAAACACCTACATAAGTAAGTGTTAGTTTTGTTTCAATATTTATTTTTGATTATTATAATACTTTCAAAATATTGAATTTAAATACACATAGTGTTA # Right flank : TCCAAATAAAATACAGCAATTGCAATACTTTAATCTATGTAATTTACAAAATATTGCAGTGAGCGACCAGTAGTGTTTTTTGATGTTTTAAAAATAATCGCTACACCATAGTAATTTCAACTGCTTAGAATATGTAAATGTAAAAGTTCGCTCACTGCATTTTATATATAATAGTGTGCTTAGTTGCCATCATAAACTAAGGTTTTTTCGGCTTAGTTAGTGGTTATAGCACATATTTGGCATACTACCTTATGCGTTTTATCTATACCCTCACCCTTCGGATGCAAGATTTCTCTTGGAGATGTTACCATCTACACTAAATCACCCGTACATATATTCTTGTATTTTATTTTACAAATTTATCACTTTTTCCTATATTTCTAGCAGCATTATAATCTGCATTAGCTTCAAATCCACATTCCAAACATTTAAATTTAGCCTGTGTTTCCCTGTTTTCTTTATCTACATGACCACATTCTGAACATGTTTGAGAAGTATAA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTACACACTATATAGTCATTATAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [76.7-86.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 258692-256765 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAUXM010000002.1 Clostridioides difficile strain HU74 NODE_2_length_317493_cov_32.6261, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 258691 29 100.0 37 ............................. GTATTATTAGTGATTAGATAATTAAAAATATCATCTA 258625 29 100.0 37 ............................. TATAAATACTCTGAGTCTGCGAATACTGGTGGATGGA 258559 29 100.0 37 ............................. AAATATTATATCAAAATATATCAGATACATGGCAAAG 258493 29 100.0 37 ............................. AGCTTAAGTAATACAGAGGCATATTGTTGTGATAAGT 258427 29 100.0 37 ............................. ATGTATGTAGGAACTTTAATAGCTGATGAAACTGGTA 258361 29 100.0 36 ............................. CACTCTTCTTATGGTTCTTCATCGTATGCTGGTGGT 258296 29 100.0 36 ............................. GCACCGGAATTTTTAAATTCACTTCTCATTAACTTC 258231 29 100.0 36 ............................. TTTTATGAAAAAAGAAAAGACACTTTAAAAATTAAA 258166 29 100.0 37 ............................. TACGATAAAAGCGGTGATGTTCTACCAAATAGTGAAC 258100 29 100.0 37 ............................. ACTTTTATGGACATGTTTTGTTTTTTTTGTTATTATA 258034 29 100.0 37 ............................. AGGATATGAATTTACAAAATCATTTAAGAAAAGTAGC 257968 29 100.0 36 ............................. TTGAAAACAAGTCTCTAACCAATTAATATTCATTTG 257903 29 100.0 37 ............................. ACACTTTAAAATTTATTTTGCTAATCCTTTGAAGAAT 257837 29 100.0 38 ............................. AGAAAATTTTATAGCTGATAAGGTATTCCCATCAATAC 257770 29 100.0 37 ............................. GTATATAATTATTAAAAATAACATTTTTTATTTCTTT 257704 29 100.0 37 ............................. CAAGATGTTTTCAATGATGTTTCTGAACGAACAGTTT 257638 29 100.0 36 ............................. ATGCTTGTTACTTTGACTGCTTGGCTTTCTTGTATG 257573 29 100.0 36 ............................. ATCATCAACCCTAAATTGAATTTTACGATTTTTATT 257508 29 100.0 36 ............................. TTTTCGCTGAGAGTTCTGACGGTTTGACATCTGCTT 257443 29 100.0 36 ............................. CAAGATATTTTTAATGATATTTCTGAACGAACAGTT 257378 29 100.0 37 ............................. GAAATATCACACCAAGAAAGAACTTTATCGAACGTAT 257312 29 100.0 36 ............................. AAGGAAATGTGAATTTGAATGATATATCTACAAAAC 257247 29 100.0 36 ............................. GTTTAACCCTGTTTCTATAGCAGCAGTTACAACAGA 257182 29 100.0 36 ............................. TTGAATTTTTTAAACTATTTGAATGATTTAAAACTA 257117 29 100.0 36 ............................. TCTATACTTAACAAACGAATTTCTATCTGAGATAGA 257052 29 100.0 36 ............................. TTATCATTTACAACTACCATTTCCCTAGCATTTATA 256987 29 100.0 35 ............................. AAACCTAAGTCTAAAACAAAGCTCGAAAGTTTTAG 256923 29 100.0 36 ............................. TCTAAAATTAATTAAAAAAACAATTAATTTTCTCAG 256858 29 100.0 36 ............................. TGGACTCAGCAAATGTTTTTTAAACCTTTCAAAAGA 256793 29 82.8 0 A.................A...GC....T | ========== ====== ====== ====== ============================= ====================================== ================== 30 29 99.4 36 GTTTTATATTAACTAAGTGGTATGTAAAG # Left flank : ATTTTATCAATGATGAAAAGTATAAAGTTTTAAAGGCATGGTGGTAAAGTATGTTTGTTATTGTTACTTATGATGTTGTTGAAGCAAGGTCATTAAACAGGGTTAGAAAAACACTTAAAAAATATCTAACTTGGACTCAGAATTCTGTTTTTGAAGGAGATATTACTGATGGGAAGTTACATAAATGTATTTCTGAAATAGAAAAGATTATTGATAATAGCGAAGATTCGATTTATGTTTATGAGATAAAAAATCCTAATTCAATTAAAAAGAAATGTTATGGTATTGATAAGTATTCTGATGAAATGTTTATATAGGTTTGCAGTGAGCGATATTTGTGCTAAAATAAGGCTTAACAGTTGGAATATAAGAGATTGAAGGCATGTGATAATTATTGTCAATTGCACTACTGCTCGCTCACTGCAAATTTTGATGTTTTTATTGAATTATAATTCCTTGAGTGTAGTATTTTCAATCTATTCAGTTATACCTATTTTGGG # Right flank : GAAGTAAACTTACGCTATAAATAAAAATCAACATAAAAATGGGGTGAAATAAAATTTATGATAAGAAAATCAAATGATAAAGATATAAATAAAATCATGGAAATATGGAAAGAAAGCACAATCAAAGCACATAACTTTATAAATAAAGAATACTGGGAAAATAACTATAACACTGTCAAAAATGAATATATACCTATATCAGATACATTTGTATATGAGGATGGTCAAGAAATAAAAGGATTTATAAGCATAATAAATAAAAGCTTCATAGGAGCCTTATTTATAAATTCAAACTATCAAAACCTAGGTATAGGAAGTAAACTTTTAGACTATGCAACTAAAGAATACAAGAATCTAAGTCTAGCAGTATACAAAGACAATAAAAAGGCAGTTGTATTTTACAATAAAAAAGGATTTAATATAGTAAAAGAGCAAATAAATGAAGATTCAAGATTTAAAGAATACATCATGGAATATGGTAAATAGCATTAATATATTTA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTAAGTGGTATGTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.86%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 7413-7057 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAUXM010000034.1 Clostridioides difficile strain HU74 NODE_34_length_33870_cov_41.1392, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 7412 29 100.0 35 ............................. ATTCATAAAGTTTGTTAGTTATTTCTTTTACATCA 7348 29 100.0 37 ............................. TAAATATCAATATTTTCTTCTCTCGTCTTTTTTTCCA 7282 29 100.0 37 ............................. AAGGGAGAAAGTGATTCTTTAATATCTTTAGAAGCTG 7216 29 96.6 36 ...................A......... TATAAAGATAATAAAAAATTGGCTGAAAATATGGGA 7151 29 96.6 37 ........................C.... TTAAATATAAAATTTACAGATGTACAATTTTTTGAAC 7085 29 75.9 0 ....................CGAAC.G.G | ========== ====== ====== ====== ============================= ===================================== ================== 6 29 94.9 37 GTTTTATATTAACTAAGTGGTATGTAAAT # Left flank : ATGAATAAAATTAAGTTAGTATAGAAAATAACATATTATCAGTAAGATAAATATATATAATTTTAAATCATATTTTCTTTTTATGAATATTTATCATGTTATAATGCTTTTATATTAACTAAGTGGGAAACAGAGTAGTTTCAAACTACTCTGTTTTTATATAAAGTAAAAATAGCAATATAAATCAAGAAAGAAGTGCATATATAAGTTATAAAATAAATTGAATAATAAGTTTTATAAAATGTATATATAAATTTAAATAATTTTGGTTCTCTATATTTAGTTTAATTAACAAACTAAAATTTTTATTAAATAAACTATGATATAATAAATATATAAATATGCAGTGTGCGATATTTCGAAAATAAACGTTGTGATGCTTGTAAACACTGAGTCACAAGGTGTTTTTGAAAAATATCAAAAAGCACTACTTGTGGCTCACTGCAAATTTCAATATTTTCTGTATCTGAAAGTATTGAAATTGCCCAATTTATTTCGGG # Right flank : TAGTTTTAACTACTCTGTTTTTTATTTGTAAATTTAATAAAATTAAATAAATGGTAAAAATTGGAAGTTGATTATTGCAAAAATAGGTACTATACTTGTAGTATAAAGAAGATATATATCGAAATAATACATATAAACTACGTACGCAAAACACTTTTAAAATAATCACAATTTTACTTTCAGATTTAAAACTCATCTTAGGGCATGACATATACAATCAAAAATATAGACTATATCAGTTTTAAAAAACTTAAAAATTGAAGAAAGGAGTCTGTTGTTTTTTCAAAAGTGGGGTAATTGTAAGAATATAAATCAGAATATTTTGAAAATATGGGGGATAATTTTATGGGAGAATTAAAAAAAGAAATTATAAATTCAATTGAAAATACAAATGATGTAAAAAAATTAAAATCAATCTTAATATTTATAAAAACAATTCTCAACAAATAAAGCCGTTAAAACAACGGCTTTATTTATCTAATTCTTTCACAAAATCAATT # Questionable array : NO Score: 6.01 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTAAGTGGTATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [86.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 8135-6790 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAUXM010000035.1 Clostridioides difficile strain HU74 NODE_35_length_33350_cov_28.0457, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================================================================================================================= ================== 8134 28 79.3 169 C......G....A-.........A..T.. GAAAGAGTTTTGCAGTGTTCGATTTTTCTGTTTAAGTATGGTTTAACAATTGGAATACAAGGCATTGAGAAGGTTTGATAAGTGTTATCAATTGCACGACTATCCGCGCACTGCAAATTTAAGAGATTTGTATATGTATAAGTATTGAAAATGCTAAGTTTATTTTGGG A,G [8110,8131] 7935 29 100.0 36 ............................. AAATTTCGTTACTCTGCTTTTAAAGCAAATTCAAAC 7870 29 100.0 36 ............................. ATAACCTTTTATTTGACGTCGATAAAGGTGTTTAGT 7805 29 100.0 35 ............................. GTTGCATCAATGGTAGAAGGTTATGTAATAACTGA 7741 29 100.0 37 ............................. TAAAGAAGTCCCAACTATTCGTTTTTTCTACTACTCT 7675 29 100.0 40 ............................. TTTTTCTTCATGGGAGACTAGTATAATACTACCCTTAAAC 7606 29 100.0 37 ............................. ACTATAAGCACGACTGGGAGAGTTGATTCAAACAGAG 7540 29 100.0 37 ............................. CAAACCAATCTTGATTTCTTGCATCACTCTCAAGATG 7474 29 100.0 38 ............................. ATAGATATAGATACTATGTTAGAAAAATCAAAAGGTGA 7407 29 100.0 37 ............................. ATGAAACTCATGTTGTGGCAAAAAGCATTCATAGAAG 7341 29 100.0 36 ............................. TTAATTAAGGGGTAGTTTAACATTAGTATTTTAGGA 7276 29 100.0 36 ............................. CTACTATCTTTTGATTGGTCTGCTGAAACTCTAGGT 7211 29 100.0 36 ............................. TTTGTTGATGTAAGTTGCTTATTATCTAGCCAACAT 7146 29 96.6 38 G............................ ATATCATTTATGACAGGCATACCATCTACACTTATAAC 7079 29 96.6 37 ...............T............. AAAGAGTTGAATAATACAGTTTTAAGAATGGCTATAG 7013 29 89.7 37 G............A.T............. TTACCAAAGTTTATTTCATTGAATATCTCATTTGAGT 6947 29 86.2 38 G............A.T............T AGTGTTAGTTTACCAACTTTAATTGCGATTGCTAACGT 6880 29 96.6 34 G............................ TGAAAAAAAGAATTATAAACTATAATAAGCTTAA 6817 28 82.8 0 ............T..T....-..T....A | ========== ====== ====== ====== ============================= ========================================================================================================================================================================= ================== 19 29 96.2 44 ATTTTATATTAACTAAGTGGTATGTAAAG # Left flank : CTGCGTTTCATGCAGTAGGTGAAATTATTAAGAAGTTAGATATACAAGATAATGAAAAGTTAGTAGTACTAGAGAGTAAAAGAGGTTGGAGTGGAAGTGTCAATAAGTATACACAAAGTGTAATAGATAAGGTTAAGTGTTGGATAGATGATAATAATAGACCTGCTAAGATACAGGGTGAAAAGAAGAATTATCATGTAGTTTATAAGATTGAGTAAATTTATAAGATTGTATTAAATAATTTAGTTTAGTTTAGTTTAATTTGGGGGGGATTAATACAATGCGTGAGAATTTACTTAATGAATATAATTTAAAAACTGATGAAGATATAGAGTATTTTGTGAAATTTGCTAATGCGTTATATGAACTAAAACAAAATAGCGAAGAAAAATTTCAAGAATATGCAGAGATATTGAGAGGTATTCTTAGAGAACAAGAAGAGAGAGAAAATAAGTAGAATAATATGGATAAAGCACTTGGATATTCTGTTGTTTCAAGTG # Right flank : TTAAAAATACTAAAAAACACTTACAAATGAGTAGGTGTTTTTTTATTGAAAGGATATGGTAATAGTGTGAAAATAGAATAATTTTGTTAGGCATAATGTGTAACTATTTTACTGATATAGTATAATGGTGTTATAAAGTATTATACTAGGGGTGATTAATGTAATATGGGTATATTTAATAATAGTGTAGAAATAAATCAAGAAGAACCATTTAAACATGATAAATTATGCAGACGAAGTGAAATAGAAAATTTAACTAAACTATTTGAAATTACAGATAGTCAAATGGTGTTAGCTGTTAATTCTCCTTGGGGAGCAGGTAAAACTACTTTTTTTGAACTGTGGAGAGCATATTTAAAAAGTAATAATGAATTGAAATCTAAGTATGAAGTGATATATTTTAATGCTTGGGAAAATGATGATTGTTTGGACCCACTCGTTTCTATAATGGGTGAAATGAAAGAGAGTATAGAAAAAGTAAATAAAACAAATTGGGATAA # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTTATATTAACTAAGTGGTATGTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:78.57%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 10365-9749 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAUXM010000035.1 Clostridioides difficile strain HU74 NODE_35_length_33350_cov_28.0457, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 10364 29 89.7 37 .GA............A............. CTTATTAAATGATGTGCAGTTTGGCTTACATTTCCAA 10298 29 93.1 36 ...............A....C........ TTGAAAGATAAAGGAATAAAAACTACTACTATAAAG 10233 29 100.0 36 ............................. GTTGATAGTAATTTACTCTTGCCAATCGCCATGCTG 10168 29 96.6 37 G............................ TAAGGAAGGTCGCATAAAATTAAGTCTATTGATTTGT 10102 29 96.6 37 G............................ ATTTTAGGCATATCTTTTGTTAGTTGCTCAACAAAAC 10036 29 100.0 36 ............................. GACAATATTATTGCCATATTATCATTTAATCCTCGT 9971 29 100.0 36 ............................. GTGAAGTCCTGTGGTGCAATAATATAACCATGCAAT 9906 29 100.0 36 ............................. CATGAATATACAGATTTGCCAGACTACGAGAGAGCA 9841 29 93.1 37 G..............A............. AATGAATCAATTGGCATAAAATGTATATATTTATTCC 9775 27 82.8 0 G...................-.-.A...A | ========== ====== ====== ====== ============================= ===================================== ================== 10 29 95.2 37 ATTTTATATTAACTATGTGGTATGTAAAG # Left flank : AGTGAGAAAGAAATAGCATATAATAATAAGTCTGTTGTTGGAAGAGCAGCTATAGGAACTTTATTTGGCCCTATGGGAACAATTGTTGGTGGGTTGTCAGGAACTGGAAATAAAAAAAGTAAAACTGAAAAGTTGTTTATAAGTATTGAATATTTTTCTCATGGAGAATTAAGGGAAATAATAGCTGAAGATTCAATACTTAATTTTCATAGCCAAGAATTTATTGACAATATAATGAGAAAAATAAATATAAGTAAGAATAATTTAGAAAATAATAAAGAAAAACAAATAAAATCAAATGATGATGCAATACAACAAGTAAAAGGATTAAAAGAGTTATTAGACATGGGAGCAATAACAGAAGAAGAATTTAGTAAGAAGAAAAAAGAATTATTGAATTTATAACAAGAGAAAATAAATAAGTATGAACATACAAAGCACTTGAATATTATGTTGTTTCAAGTGCTTTGTATGTTAAAAAGTGGTATAATGGAAATAGA # Right flank : CTAAATAGAAAAAGAAAGCACTTACTTTTATGGTAGGTGCTTTTGTTTTGCTCAAAATTGGTCGGTTGAGTAAAATAATTAGAAAAAATTAGTAAAAACCTATTGAATTATTGGCAGACATCAATTATAATAATAAGTGTCAGCCGATAATTATACAGGAGGTGATTACTATAACTAAAAATAAGGTTGGCAGACCTAAAACGGAAACTGCTATGAATAAAAGAATTACAGTTAGATTGGATAGTAAGCATGAAGAAATTTTAGAAACATATACAAAAAAATATGGTATTACTAAAAATGAAGCTGTAAGAAAAGGTATTGAGAAGTTAGAAGAGAAAGAATAAAAAATAAGGGTCACTCTCCCCGACCAAAGATTGAGTAACCCCTATTGATGTATACTACAAATATACTAATGTTAGTATACATCATTCCTTAAAAAAATTCAAATTTAAGGAGTGTAATATTATGAAAAATTTAATAGTAAAAGAGTTCAATGGAAG # Questionable array : NO Score: 5.71 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTTATATTAACTATGTGGTATGTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:78.57%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [4-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.5 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 92109-90439 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAUXM010000013.1 Clostridioides difficile strain HU74 NODE_13_length_111789_cov_28.8402, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 92108 29 100.0 38 ............................. GAATCAACATCAACCTTCTCAGCATGAATATCAAACTG 92041 29 100.0 36 ............................. AAAATTAAATAAAGTAAATCATTAAACACCATGAGT 91976 29 100.0 38 ............................. CTTTTTGAATACGAGTATAAGCATAGAAAGCTTAATAG 91909 29 100.0 36 ............................. TTTGGAGGTGATTATTTGGCTAAAATTTATAATAAA 91844 29 100.0 36 ............................. TATAAAGAATCATCATTTTTTAAAATAAAAGTAGAA 91779 29 100.0 36 ............................. TCACGAAGTGACATAAATTATAAAAATGTTTTAGGC 91714 29 100.0 37 ............................. GAGAAGTGTCTCAGGGTTATTTAAAGGCTCTTATACG 91648 29 100.0 37 ............................. TACAAAAACCCCCTTCTTCAATTAAATTATTTTGAAA 91582 29 100.0 36 ............................. ACTTACAAAGACTAAATCTCCGTATTTTTTAGCAGT 91517 29 100.0 36 ............................. TAGTATATAACCGTTATATTTGAATCTAAACTAGCT 91452 29 100.0 37 ............................. CTTCTTGATTTATCTATTATTGTTGTTAGAAAAGAAA 91386 29 100.0 38 ............................. TAACATTCTCTACTTGCAAATATAAATATAAATTGCTT 91319 29 100.0 37 ............................. GCAACTGAATTTACAGTTAAGACCTTTAAGCTTTCGA 91253 29 100.0 36 ............................. GTTTCGATATTTGACATGTGTGAAGGAGTTATGTTT 91188 29 100.0 37 ............................. CAAAATTCTGATATTTCTTGGATTTTATCACTTAAAT 91122 29 100.0 37 ............................. AATTCTTTGATTGAATTAACTACTTTTTCAACTGCAT 91056 29 100.0 37 ............................. TTCGAATTATCATTCACAAGTTCCCAGTTAGCTCCAT 90990 29 100.0 37 ............................. ATTCTATGTTTGTCATTCCAAGAACGAGGATTGTAAA 90924 29 100.0 37 ............................. ATCGAATATGTAGACAAATTAGAAACAGCAGAACTAA 90858 29 100.0 35 ............................. ATAGTCAAAAGCAACGTCATAGTCCTTTACGTTTT 90794 29 100.0 36 ............................. TGGTAAGGAATAAGTTCTGGTCGCCAAACAAGAGAC 90729 29 100.0 36 ............................. ATCATCAATTGTTATTGTTTGAGTAGATGCAACATT 90664 29 100.0 37 ............................. AGCCCTCTTTTCAATATCTCTTTCATTACATTTTTAG 90598 29 96.6 36 ..........T.................. TCGTCTACCCATTCTCCACCACCTTCTCCATCACTA 90533 29 100.0 37 ............................. GTTATTGGCCAACTTGGATTATTACCTTTATAGTTTA 90467 29 89.7 0 ..........T............GC.... | ========== ====== ====== ====== ============================= ====================================== ================== 26 29 99.5 37 GTTTAAATTACACTAAGTTAGTTATAAAT # Left flank : TAAATTAAACTATATTAGTTATAAAATGCCATGCTTATATTATGTGTTTGAATTAAACTAAATTAGTTGAGATATTAAGAATTAAAATGTTAATACAAGCAAGTTATATTAAAATATATAAAAATCATATGATAATATTTATATATTTTAGATAATGAAAAAACTAATTAAGGACATAGATATGTTTTTAATAGTTTGTATTTTGAGTATAAAAGATATTGATTGTTTAATTAATATCTTTTTATATTGTTATCTTATATCAAAAAGTATGTAATAATTCTATGTTAGATATGTTTTTAAATTTATTATGTCTTAAAAATGATATTTAGTAGTTTTGGTTTTGCAGTGAGCGAAAAAATTACATAAGTGGCTATAAATTAGTGATGGCAAAGATTACAACTGTATTTTTGATTATACCAAAAAACACTACTTAGGGCTCACTGCAAATTATTCATTTTAATAATACTATAAGTATTGGAATTACTGTAGTTTTATTTGGG # Right flank : AAATCAGATATATCAGAAAGTATATATAAAATTATGTATAAACTATATTGTTATGAGTACAGGTAATATTTACCCATTTATTAAAAAACTTAGCTAAGAATTTGATTTATATTATTGAATTAGCAAGAATTTTGGAAAATAGAAATATATACCCCAACGATACCCCAATTACAAAAATAAACAATAAAAAACAACCAAAAAAATTGCTCCAATATCATAACTAAATAGCTATGCACCTACATTTACAAAAACCAACAAAACAATCAAATAACCACTTATAGACTCCCCTCGTCTCCACCATTAAAATCTAAGAAAAGTATTAGCACTTTGCTAATATTTTTTTTGTGAAAACTAATCATAACCTATATAATTAACTTATAAAACACACACAAAGAGGTAAAACTATATGGCTAAAATTGATAATATGATGTCCATATTATGGATGCTAAACTCAGATAAAAAAATAACCGCAAAACAAATATCTGAAAAACTAGAAATAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAAATTACACTAAGTTAGTTATAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.30,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [81.7-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 9854-8580 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAUXM010000049.1 Clostridioides difficile strain HU74 NODE_49_length_17502_cov_19.8708, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 9853 29 100.0 37 ............................. TAAGCTGATATACCTGTTTCATTATAAGCTGCAAACC 9787 29 100.0 37 ............................. TATAAATACTTATGTCTTTATCTAAATTATTAGCTAT 9721 29 100.0 37 ............................. TCAGCTGGTTATACTTTTGCTTGGAAAGGTTTATTGG 9655 29 100.0 37 ............................. TTTGCAAATGCAATAGCAAATCAAATAAGTGCTACAC 9589 29 100.0 36 ............................. TTTACGAAAAAATTTCAAGGGGTGCATTTTTAAAGA 9524 29 100.0 36 ............................. AAGGTCGTCAATATTTAGATAAAATACGAGATAATA 9459 29 100.0 36 ............................. AGAGAATACTACGCAGAAGTTACATCAACTGCCGTT 9394 29 100.0 36 ............................. GTATCATCAGATACAATCATGTCATTTGGATTTATT 9329 29 100.0 37 ............................. AGAAATTGATTTTACATATTGGAAAATATACACAATA 9263 29 100.0 37 ............................. GTTGAAATCTCTATATTTTCATCATAATATTTTCTAA 9197 29 100.0 37 ............................. TTAAAAGAATTTTTAATGAAAACTCAAAAATTTATGC 9131 29 100.0 36 ............................. TTTGAACACAAAAAGGAAGTGTTTTTATGTCATTTA 9066 29 100.0 37 ............................. TAGTGATAAGCAATATTATTTAGACAAATATTTTATC 9000 29 100.0 37 ............................. GTTCAAAAGCAATCTGATACATATTTTAAATACAATA 8934 29 100.0 36 ............................. AACCATTCATCTTTAAATCTTGTAAATAATTTAAAT 8869 29 100.0 36 ............................. CTTATTAGTGTAATAACCTTTTTAATCCAGCATGGT 8804 29 100.0 36 ............................. TATGTACCTTTTAATACAGGAATGCTAAAGAATAAT 8739 29 100.0 37 ............................. TCTCTAAGCAACATCACAAGTCTACTAGCTACATATA 8673 29 96.6 36 .C........................... ACGTTCTCTCATACTTGTGTTCATATACCAGTCATT 8608 28 86.2 0 ...............A.......A-...T | G [8582] ========== ====== ====== ====== ============================= ===================================== ================== 20 29 99.1 37 GTTTTATATTAACTATGTGGTATGTAAAG # Left flank : TTTAGCAAAATTCGAAATAATGTAGATGAAGTTGAAAATATATATTTTCGAGAAGAAGAGGTTGAAACTAAAGAAGAAGAAAAGCTACGACAAGAAAAAAACAATGACAATAATTATATTCGAAACAGTGGAATTGACCCACTAGATAGAATAAAGAAACTAAAAGAGTTGCTAGACTCAGGTGCAATTACACAGGAAGAATATAATAAAAAGAAAAAGGAATTATTAGAATAGATAATATAGTAAGCACTTACAAATATGTAGGTGCTCTTAAATTGATAAATTATTCCATTTTAATTTTATAGTTTGAATTTTATGATATAATAAAAATATAGAAGTTTTGCAGTGAGCGATATTTGTGATAAAGTAGGCTTTAACAGTTGCAATGTAAGGTGTTGAGGGAATGTGATAAGCGTTATCAACTGCACTACTCATGGTTCACTGCAAATTTGAGAGAGTTGTATAGGTGTAAGTATTGGAAATACCCAATTTATTTTGGG # Right flank : TATTGTTGTTTTTAAAAAATTTTAAATCAAAAGAAGAAAAAGACTATGATAAGTATAAATTTGATTTTAACTATCATAGTTTTTTATTGTTAATATAAGATATTTTTAAAATATATTATAAAAATAAGCTTTAATAAAAAAATATAATAAAAAACTCGATTAATAATACCTTTAATTGGAAAAAACTTCCAACTGTCTACAAAATTCGATTTTTTTATTACAATTAAGCTTTTTTTATTGCATTAACAAATCAAAAGTATTATTATGTAAGTAAGATAATTATCTAACACAATTCTGAATAGTCGGAAAACAGTTCTATAAATTAAAAAATATAATTATGTAGCTTTTATTAAAAGTTTGTTGGGGATTTCTGACTAAAAATAAGAACGTAAGTTCTGTAATGGGGGTAATAGTTATGGAAGAAGAAATTTGTTATAAGCTATTAATTTTTTACGAAGGCTTGGAAAATTTAAAAAGGGAAGATGATATAAAGTATAATA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGTGGTATGTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.86%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [85.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 12971-11566 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAUXM010000049.1 Clostridioides difficile strain HU74 NODE_49_length_17502_cov_19.8708, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 12970 29 100.0 36 ............................. ATTAGTAAGAGTAGCTGAGGGTAATAAAAATGAGGC 12905 29 100.0 37 ............................. AAAATTACAATCAATTGATAGACAATATCAGCTACAC 12839 29 100.0 37 ............................. TCGACTTCATTTTCGTTAGCTTTCTTTTCTTTTTTAG 12773 29 100.0 36 ............................. ATTAGTAATAAAATATCTTTTAGATTACTTGATAAA 12708 29 100.0 37 ............................. TCATTACATGTACAGTCATATGCTTTTATATTTTCAT 12642 29 100.0 36 ............................. ATGTAAAACATAAAACAGATGTATACAATGATTAAC 12577 29 100.0 37 ............................. TATTCTGAGATTATACTACATATTTTCAATAATTCTT 12511 29 100.0 36 ............................. CAGATAGCGCACCTACGCAGGTAATTAATAATACTT 12446 29 100.0 37 ............................. TCTAAGGTAACAACAGAGCTTGGAGAATTTACGGGGA 12380 29 100.0 37 ............................. GTTGCGTACTGCTTAGCAAGATAAACTCTTACATCTT 12314 29 100.0 37 ............................. TAGAACATGATTATATTATTGAAGTATTAAATTAAAA 12248 29 100.0 37 ............................. GAGGAGCAGATTGCTAAAAAATTAGGGGTTGGTTATT 12182 29 100.0 35 ............................. TAACGAAATACATAATCGTTTTGGTAGTTCTTCAT 12118 29 100.0 37 ............................. GCGATAATACTTGGTTGGAGATATGCAAAAGAAAAAT 12052 29 100.0 36 ............................. ACATAAAGAACATCCGTTATGTCCTTTACAAGCATA 11987 29 100.0 36 ............................. CTTCTTTTTTTATTTCTTTTCACTTATTTCTTCTTC 11922 29 100.0 38 ............................. AAAGAAGTATGTGCGCTTGATATGTGTGAATATATAGA 11855 29 100.0 37 ............................. TTAAAAAATAGAGAATTTCAACTAGATGATGTAACTA 11789 29 100.0 36 ............................. ACATTTGACGTTGGAGATGATAGTATAAATTCAAAG 11724 29 100.0 37 ............................. TAAATATATGTAAACCATGTGTTTTCCTCATACTATG 11658 29 100.0 36 ............................. AAATGTTTTAATAAATCACTTAGATAAAAAGATGCA 11593 28 79.3 0 ................A..TGC.-....A | ========== ====== ====== ====== ============================= ====================================== ================== 22 29 99.1 37 GTTTTATATTAACTATGTGGTATGTAAAG # Left flank : TTATTATTGTTTATAGTCGATTTTATTTCAATTAAATGTTTTTCAGCCTCTTTTTTCTTTTCATAACTTCCATAACTTTTTTGTTTCTTTTTCCCAGTTTCTTCTTCCACATACTCCACATATACATGAAATTTCTCATTTCTTTTTCTTATGAAAGCTGACTTAATATTCATAAGAGCACCACCCTTTGAGTTAATTTGAATTAATTACTTAATTATATTTTATAACAAGTGAAAAAAATTTTCAGAGTTTATTAAAAAATATTTATTTTTATTAAATTATAAATTGTTACAAATATTCAAAAATAATCTATTTATGATATAATAAAAATATAAGAGTTTTGCAGCGTGCGATTTTTCTGTTTAAGTATGCTTTAACAGTTGAAATACAAGGCATTGAGAGTATACGATAAGTGTTATCAATTGCACTACTAGCCGCTCACTGCAAATTTGAGAGAGTTTTATGTGTGTAAGTATTGAAAATACTCAACTTATTTTGGG # Right flank : TTAAAAATACTAAAAACACTTACTTAAATAGTAGGTGTTTTTTTATTGAAAGGATGTGATTATAATGAAAAAAGTAATATATGGGAAAAATATGTAAATATATATGTTATAATATTTTTAGCAAGAAGATGTAATCTACAATTTATAGAGTGGAGTTCATACAAAAGATTATCCTCCCAACATTGATAGGGGAGGTGAGTATGTATGGATAATTTTTTATTTAATGTGTTAGCTAGTGTAACAGCTAGTTACATAGTTTACTTGATTAGCAAGTTAATCAAAAAAGTAAAAAGCCACTCTACCGCAAAGAGTGACTTAAAGATTGATATAAATTTTAAATATCATCGTAAAAAATAACTTTCAGTTATAGAACTTCACTCTACCGCAAATAGATTGTAGTTCTTCTTGCTTTTATTATACCACAATAAAAAAATTTTAACATTAATTATTATAAACAATGATAATGAATCTAAATTAATGAATAAATCTAATTGTAAAAA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGTGGTATGTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.86%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //