Array 1 777077-777577 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_CP035454.1 Streptococcus pyogenes strain emm54 chromosome, complete genome		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence               	Insertion/Deletion
==========	======	======	======	====================================	==============================	==================
    777077	    36	 100.0	    30	....................................	ATTGATCACAACATCCAACGCTTAGGTTAT	
    777143	    36	 100.0	    30	....................................	ATTGATCACAACATCCAACGCTTAGGTTAT	
    777209	    36	 100.0	    30	....................................	ATTGATCACAACATCCAACGCTTAGGTTAT	
    777275	    36	 100.0	    30	....................................	AGGCAGTATGTGTGCCATCTTTACGTACTA	
    777341	    36	 100.0	    30	....................................	GACTAAATTTGTCAGACAAGATACCTTTGA	
    777407	    36	 100.0	    30	....................................	GTCAGACTGCCCACAAATAATTTTAGATGG	
    777473	    36	  97.2	    30	.......................G............	TAGAGTAAACCGAATCTTTGCCATCTCTGG	
    777539	    36	  94.4	     0	..................C.............C...	|                             	T,TT [777568,777572]
==========	======	======	======	====================================	==============================	==================
         8	    36	  99.0	    30	GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC	                              	       

# Left flank :   AGAAACCCGAAGTGAAATCGATGATTGACAAATTGGTTGCTACGATTACAGAACTGATTGTCTTTGAATGCTTAGAAAATGAATTAGATTTAGAGTATGATGAAATCACAATCCTGGAATTGATTAAGTCCTTAGGAGTAAAAGTAGAAACGCAAAGTGATACTATTTTTGAAAAATGTCTAGAGATACTTCAAATTTTCAAATATCTCACTAAGAAAAAGTTGCTTATTTTTGTCAATAGCGGAGCTTTTCTAACAAAGGATGAAGTGGCTAGTTTACAAGAGTATATATCATTGACAAATTTAACAGTTCTCTTTTTAGAACCACGTGAACTATATGATTTTCCGCAGTATATTTTAGATGAAGATTATTTCTTAATAACTAAAAATATGGTATAATACTCTTAATAAATGCAGTAATACAGGGGCTTTTCGAGACTGAAGTCTAGCTGAGACAAATAGTGCGATTACGAAATTTTTTAGACAAAAATAGTCTACGAG
# Right flank :  CATTGCCAATGGTAACTTGAGAAAGAGGGTTAATACCAGCAGTCGGATACCTTCCTATTCTTTCTGTTAAAGCGTTTTCATGTTATAATAGGCAAAAGAAGAGTAGTGTGATGGAACAAACATTTTTTATGATTAAGCCAGATGGGGTTAAGCAAGGGGAGGTAGTTGGAGAGGTTTTGCGGTGGATTGAACGCCTAAGATTTACGTTTAAGCGATTCGAGCTAAGACAAGCTAGTTCGAAATACTTGGCTAAGCACGACGAGGCCTTGGTGATAAACCTTTTGATCCTAAACTTAAAGCTTACATGACAAGTGGTCCTGTTTTAATTGAGACACTTCTTGGGGACTAAGGTGGTTTTGTCTTTTTGAACCATGATGAGAGTAACCAATCCTACGGATGCTCTTTGCGGAACCATTCGTGGGAATTTTGCTCAGGCTCCTGGTGATGATGGAGGTGTTTTTAACATGGTGCATAGGTCTCATTCAAGAGGCTCTGCTAGG

# Questionable array : NO	 Score: 5.86
# 	Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:57.14%AT]
# 	Reference repeat match prediction:         F [matched GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  NA [-0.70,0.00] Score: 0/0.37
# 	Array degeneracy analysis prediction:      NA [0-0] Score: 0/0.41
# 	AT richness analysis in flanks prediction: F [68.3-58.3]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [4.77,0   Confidence: HIGH] 

# Array family : II-A/B/C [Matched known repeat from this family],   
//