Array 1 14477-14019 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP010408.1 Streptomyces vietnamensis strain GIMV4.0001 plasmid pSVL1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 14476 29 93.1 32 ...............A............T CCGCCCGCGGAGATCGCTGAAGACCTGGACGA 14415 29 96.6 32 ...............A............. TGGTCGATGAACCACGACGGCCCGGAACCGGG 14354 29 100.0 32 ............................. ATCAAGGCCATCGAGCGGCAGATCCAGGCCCT 14293 29 100.0 32 ............................. TGTTCAGGTCCGTCGTCGTGCGGACCGGGGAG 14232 29 96.6 32 .....................G....... GCGGGCACGGCCACCCGGCTTGCCGAGATCTT 14171 29 93.1 34 .G....C...................... GCGCGTGAACTGTGCGCGAGGCCGGATGGAGCCG 14108 29 100.0 32 ............................. CGCCAGTCGACGACGCAGTCCGGCAAAAACGG 14047 29 89.7 0 ...T..C...T.................. | ========== ====== ====== ====== ============================= ================================== ================== 8 29 96.1 32 GTGCGGTCCTCGCGGGCAGGGACGGTCCC # Left flank : GCGCGAGGCGTCGGCGTAGCGCTGGAGGATCGCTACCTGCGAGGGGGCGGGGTCCAGCGTCTCTTTGACCACGACAGTGGTGGTGTTCTCGTCCATGCGCGCACCTTCGCACTCGTCACTGACAAATGGTGCATAAGGGTTAAAAGTTCAGTTAATGCGGGCTTCCCTTCCGTTCTTCTCGTACGGTGTTGCTTGTTCGCCTCCCACAAGAGGGGAACTCGTCCCCTGGATGGGGGAGTAGAGCGCCCGTGGACTGCACCAGCCGCAAGGCAAGGGCAGGCAACCCCTCACCGCCCTGGTGCGCAGAGGGAAGGAAGCGGTGCAGGACCGGGCTGGAAATAGCCTGCGACCAGCCAGCTGGTCGCCCAGGGCGGCCGGGTAACCGAGTCGCCCGTCCTTAACACGCCCGTGGCGGAACACGCGGAATGCCACCTTTGTCGGAAAACTCGAAAGTGGCGTCAGGAGTTCACCTCCTGGCGAGAAGGCCCAGCTCGGCAAGG # Right flank : TGTAGCGGAGGCCACCGACAGGCAGACGCGACGAGTCGACTCCTTGCGGCCACCACCGTCAACGTGTCAGGTGGTGCCGGCCTGATGGCCGAGAGCCCGCCATCACCCTCGTCACACCTCGTCGCGGTGCTGGCCTCGGGTGTGGTCACGGCGCTCCTCGCCGGGCCGGAGCACCCACTGCAGCTGGATGAACGCGGCCGTCTCGTCCTCGAACTCGGCGTGCACTCCGTACTTGAGCGCCGGCGGGGTCGCGCGGGTGCTGTAGCGCGTGGCGGTGACGGCCCCGGCCGTCATGGCGGCGTGGGCGAAGAGCAGCTCGATGTCGCCAACACGGACCGGGCCGGAGGTCGGTAGGACAGGTGCCGGATCGAGATCAGGGGCAGGGGGCCGGGACTCGGGGGTGGTCCGAACCAAGATCTGCCACCAGGCCTCCCCGCCGCCGGTGCGGGTGACGAGGCCGTAGACCAAACCGTCCTCCAGCTCGCCTCCGATGGGCCGGC # Questionable array : NO Score: 2.75 # Score Detail : 1:0, 2:0, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCGGTCCTCGCGGGCAGGGACGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.70,-6.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [31.7-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 8838046-8838257 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP010407.1 Streptomyces vietnamensis strain GIMV4.0001 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 8838046 29 89.7 32 ........C..T.G............... TACGAGGGCCAGCTCAATATCTTCCTCGACCG 8838107 29 100.0 32 ............................. GAGGTCATGAAGTTCGTCTCGCCCATGAAGGT 8838168 29 93.1 32 ..C.....C.................... GACGCCGACACTTGGCTCTCCCCCTACTGCCA 8838229 29 79.3 0 ........C..GG...TT..A........ | ========== ====== ====== ====== ============================= ================================ ================== 4 29 90.5 32 CTGCTCCCTGCACCCGCGGGGATGGTCCC # Left flank : CCTCTTCGAACGCCGGTGCCGGCACGAAGCGGCCGTGTAGCCAGGGAAAGTCGGCCTCGTCGATCACGATCTCGCCGAGCAGTTCCTCTTGCCTCATCAATCGCCAGAGATCACCCTCGAAACCCATCCGGCCGGCTCTCCGATCTATGTCCTGTTGTCGCCGACAGCCTCCCACGCGGGGCTGACATCGAGATCCCAAGCGCCACCACTGTCTGGGCCGAGGGCCTGCTCTACACACCAGACCGTGCTTATGAACGCATAACCGGTGAGGAGTGGGACCGTGCCACGCGCTACTCGTACGAGTCGTACTCGAATACCGAGGGCTGGGCTGCTTGAACGACTTCACCGGCACGTGGTGCCGGACTCGGGTGCGTTGAGCGCTGTCACGGCCGGCGCGTTGGAACCGACTCGTACACAAAGCCCGGACACCCGGTTTGCCGGCTTCGGTGAAAGTGGTTCAGACGACGTTGTTCGTGGGATAGAACTGCAGGTCACGGAGG # Right flank : CGGGGGGATACGGGATATACGTCACCTCCTGGCTGCTGCCCGTCTGCGGGGGACGGGTCCGAGCCGGCCGGCTTCGGTGGAGGTTTTCGGCAGCTGTTTTCTGTTTCTGTGGGGGTGAGCCCTGCTCAGGGGCCGGTTCGGGGACTGAGTTCTACCTTCCGGATCATGTCTGCCAGCACCGTGCCTTGCCGGGTCGCCGGGCCGCCCGGTATGGGGGCAGGCTTTCTTCCTTGTGATGGACGGCACCTGCGGGCGTCGTCTGCCAGTTGCAGCACCGGGCGCGGGTCTGGTGCTTTGATGCCTGCCTTGCCCGGTCGGGGGTCTCCCTCGTGTTCCGTCCGTGCGCGAGGAGTCGGATGGCGTCGGTGTTGTCGGTCCCCGGTGTTAGCGTCGCCGTCATGGCGAACCGTTCCTATCTCTACTCTGCGGACTCGATGCCGAGCGAGGCGGAGATTCCCCAGCGGATCCGGTGCATATCGGAGCACAACTGGGACGTTCCG # Questionable array : NO Score: 3.58 # Score Detail : 1:0, 2:3, 3:0, 4:0.53, 5:-1.5, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCTGCACCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.50,-5.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [5-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 8849245-8850777 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP010407.1 Streptomyces vietnamensis strain GIMV4.0001 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =============================================================================================================================== ================== 8849245 29 86.2 32 ........T..TTG............... CAGACTGGCTGGGCTTTCAAGGACCGGGTCGT 8849306 29 86.2 32 ..AT.......G................T ACCACGGTCATGCTGCGGCGCGACAACGCGTC 8849367 28 86.2 33 ..............T..A.......-..T CCAGAGCACCCCGGGGGACCGCGAGCGGTTCAA 8849428 29 86.2 32 .....G......T...T..........T. GCGTCACCGGTTCGAAGAAGGCGCCGGCGGAG 8849489 29 86.2 32 T........AT...T.............. TCCGTGACTCCGGGAACGAGCGTCCACGCCGG 8849550 29 86.2 32 .......T...C..T..........C... TTGAAGAGCTTGGGCTCCAGCGTGTTGTACCT 8849611 29 82.8 32 ........T.T..TG......G....... TGGCTTGGGAGCTAGGTCGTCGAGGAGGCCCT 8849672 28 82.8 31 .....T......TG...........-..T ACGAACACCGCGTCCTGAACTGGCTCGACCT 8849731 29 89.7 32 ................T.A.....A.... TCCCGCGTGCCGAGGGAGTGGGGCGCCCGGTT 8849792 29 82.8 32 .C.....T...C..T..........C... GCGACCGCTTTCGGTTCCGACAACGGCCTCTT 8849853 29 89.7 32 ..........TG.............C... GACCCCTCTGCGTACGAGGTCCTGGCCCTGGA 8849914 29 93.1 32 ............T....A........... ACCGGCCTCGCCCTGGAGCGCCGCTACACCGT 8849975 29 89.7 34 ...........T.G.............T. GAGGTGGGCGTCTACGTTCCCCCGGGCTGGGCTG 8850038 29 86.2 32 .........AG....C............T TTCCCGGGCGTCGCGCACTACATCGGCGACAT G [8850055] 8850100 29 82.8 91 ...........G....TA........T.T GACTGTCTCGTTATCGGGGTCGGCGTCCTAATCTGCTTCCTGCGCGAGGGGATGGCTCTGCGGGCGGGGTCACATCGTCGCCGAGGCGCTG 8850220 29 82.8 127 .....TT.......T......G.A..... TTCCAGGGGTCGCGCTCGCTGGCGGCTGGGTCCCGTTCCCTGCTTGTGCAGGGATGGTGAGTACCTGGTCGCTTGGGTCGCTGTCTGCTGCGGTCATACCCCGGGCCTTACCACCGTGCTTACTATG AGGGGA [8850237] 8850383 29 96.6 32 ......T...................... GACGCTGACTGGTACATGGCCAAGACAGGTGG 8850444 29 100.0 32 ............................. GCGGTGGAGGGTGCGGAGGGCATCGACCTGTT 8850505 29 89.7 32 ...........TTG............... TCCACCGGACCCACCTGCTCCGAGCAACGGAC 8850566 29 93.1 32 ........T.....T.............. GTGCCGTAGGTCGTCTCGGCCGCGATGCCGAT 8850627 29 96.6 32 .....T....................... GCGTGGATCACCGGCTCCGGCCCCCACGGCAT 8850688 29 96.6 32 ..........T.................. TCGCAGCCGAGCTCGCCGGACTTGATGCCGCC 8850749 29 93.1 0 ..........T.................T | ========== ====== ====== ====== ============================= =============================================================================================================================== ================== 23 29 88.9 39 CTGCTCCCCGCACCCGCGGGGATGGTCCC # Left flank : GAGCCGCGGCTTCGGCACCGGACTTCCGCTGAAACGCGGGTGTCGCCTTCCCGCAGTCATGCATCCCGCAGAGCCAAGCGAAGAACCGCCGCCCCCTGCCGCCGGACACCCGGTCGAGCATGTCCCTCGTGGCCGGCGCCAGGAAGCGGTCGAACATGAACTCGGCGACGGCCGCGGTGTCGAGCATGTGACACAGCAGCAACGACATGGTCCCTCCGCCCTTCTCGGCGGACTTCCCCCACAAAACTCCCAAGCGGGCCATCTCACCGGAAGAAAGACCCAGGCGTGCACAGATTTCCAGCATGACCCGAACGGTAGGGGCCGCCACTGACAGGCGGTGGCCCAACCGGAGGAAGACGCACGTGGGCGGTACTCTCTTCATGCGAGGAACCTCAGCTGCTTTCCCCGCAGGGGTGGCTCCGCCGGGACTGGCGAGAAGCGGTATACCAATCCCTTGGGGCTGGTCCTGCGAGGGTCGGCTACCCTTCGCGGGACCTCAT # Right flank : TTTGGTTTCTTTGGGGTCAATGCCCGGGCGGGCTGCTCCTGTTTACTGGGGGCCTGGGGCGACCTGTGTCATTTCGTGTGGGGTTCTGGGCCGGCCGTCCGTGCTCGGGGGTGGGGTTGCGGACGGCCGGTCGTTGGGGCACCTGTCCTGTCGGGTGCCCTGTTCTGACCGTACGCTGTGGTGGGCAAGAAACGCCTGTAGCAGCGCTGCTGTTCGCGCCGGGGCGGGTGATGTGGCCTGGCATTCGGCCGAGCCGCTACTCCCCGCGCCTGCGATCGCCGACGGGAGAGTCTGTTCCCCGCTGGCGTGGGGATGGTCCCAAGCCGGGGACTTGGCGCGCGTGGGCGTGCCCGTGCTCCCTGCCCCCTGCGGGGATGTTCTTGCCGTGCTCGTGCCTGGACCGACACGGCCGGCTGCTCCCCGTACCCGCGGGGATGGTCCCCTTCCGCCTGCGCCGGATGCGACGTACCAGTACTGGTCCCCGCGTCCGTGGGGATGGT # Questionable array : NO Score: 2.72 # Score Detail : 1:0, 2:3, 3:0, 4:0.45, 5:-1.5, 6:0.25, 7:-0.57, 8:1, 9:0.09, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.60,-8.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [35-26] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.78 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 8851068-8853263 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP010407.1 Streptomyces vietnamensis strain GIMV4.0001 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================================================== ================== 8851068 29 79.3 32 ...T.......TGG..T........T... AAGCCGGGGACTTGGCGCGCGTGGGCGTGCCC 8851129 29 75.9 31 G.......T..C............TT.TT GCCGTGCTCGTGCCTGGACCGACACGGCCGG T [8851143] 8851190 29 93.1 32 ..........T..............T... CTTCCGCCTGCGCCGGATGCGACGTACCAGTA 8851251 29 75.9 68 ...G.......GT...T........T.GG TGTTCCGGTCGCTTCGGTCGCTGTGTGGTGCCAGGTGTGGTGGGTATCGACCGGTGTACTGACCATGC 8851348 29 86.2 32 ......T....G............AT... GTCCACGGCGGCGTGATCGACGAGGTGCACGT 8851409 29 93.1 32 .....T...................T... TTCGGGGGGTCCGCCGGGATGCTCGCCATCGA G [8851426] 8851471 29 82.8 32 ...........CTG.......G...T... CAGGACGCTGGCGACCTGAGCGCCGCGGCTTT 8851532 29 82.8 32 ......T....GT.T..........T... AAGGACCTGCGCGAGCTGACCGCCCGCGACCG 8851593 29 79.3 32 ........T..GT............TT.G TTGCACAGGTACTACAGCTCGTCGGCGAAGAG 8851654 29 65.5 32 TC.T......A.TTT.T.......AT... ATCTCACAGACGTGCCTGGATGACCTGATGCG 8851715 29 82.8 32 T.....TT...GG................ AACGCTGCCCAGGTGAAGGAACGCTACGCCGG 8851776 29 86.2 32 ....AT........T..........T... GGCATCCTCCTGGACGGTCTGCACATCGACGC 8851837 29 82.8 32 ..A........CTG...........T... GCGGCGACCGTCGCGTTCAAGGCCGACGCGCC 8851898 29 89.7 32 ...........G..T..........T... TTCTCGGAGCTTGCGGTCCGGCGCGGCATGGA 8851959 29 93.1 32 .................A.......T... GCCGCGAAGGCGGTGCCGCGCGGGTCGGCGGT 8852020 29 89.7 32 ............T......A.....T... ATGGTGGTGGCGGCGAACTGCATCCAGTCGCG 8852081 29 89.7 32 ...........T..T..........T... CACAGGGCCATGACGGTGTCCGTCAGGCCCTT A,TAT [8852092,8852095] 8852146 29 86.2 32 .....T.....G..T..........T... GGGACGATCCTCCGCGACGCCCGGAGCTGCTA 8852207 29 93.1 32 ........................TT... GCGCACATCGTCCTCGACCTGCGCCACCACTT 8852268 29 86.2 35 .....T.....C.....T.......T... GAGCAGATCCGGGACGTGAATACGTTGTTCCTCAC 8852332 29 75.9 34 ...T....T..CTG...........TT.. TCGCCGCCGGTCGACGAGCTGGTGCGCCCGGCGG T [8852337] 8852398 29 62.1 78 .....T..T..GTTG......T...GGTG GGGGTGTCTGGTTTGCCGGTTTCGGTGAAAGTAGTTCAGATGGTGTTGTGTGTGGGGTAGAACTGCAGGTCACGGAGC C [8852421] 8852506 29 100.0 32 ............................. GAACCCGCCCAGTGCGAAGCCGCCCCTAAGGG 8852567 29 100.0 32 ............................. CGCACCCGCAGCGAAAGGCGTTACGGCCGGCG 8852628 29 96.6 32 .........................T... GAGCTGCGCGACGGGTGGCTCGGAACCGTGCA 8852689 29 100.0 32 ............................. CCCGGGCTGGCGACACCGCCGCCCGCGAGGGT 8852750 29 93.1 32 .........................T..T GTGCCAGGTCAAGCTCAGCGAGGGCCCGGCCG 8852811 29 100.0 32 ............................. GCGACGGCGAACCTGCGGTCGCTCGTGAATCC 8852872 29 93.1 32 .........................T..G GAGGGGCACATGTCCTACCGCCCCCACCCCAC 8852933 29 96.6 31 .........................T... CGTCGGTCCACTGGTCCCGCAGCAGGGAGCA 8852993 29 93.1 32 ................T........T... ATCGTGGTCGTTTCGAGGTGCCAGGGTTCGGC 8853054 29 93.1 32 ...........T.G............... TGGCCGAGGTCACCCTCGTAGCCGAGACCGAA 8853115 29 82.8 32 .....T.....G..T..........T..G TATAACGCTCGCGACTGCGAGGTAGCGATCGA 8853176 29 86.2 29 ...........CTG...........T... GTCCTGCGCTTCAGGGACGGCTCCGATTG 8853234 29 75.9 0 ........T...TG......AG...T.T. | C [8853244] ========== ====== ====== ====== ============================= ============================================================================== ================== 35 29 86.9 34 CTGCTCCCCGCACCCGCGGGGATGGCCCC # Left flank : GCTCCCTGCACCTGCGGGGATGGTCCCGTGCCGTAGGTCGTCTCGGCCGCGATGCCGATCTGCTTCCCGCACCCGCGGGGATGGTCCCGCGTGGATCACCGGCTCCGGCCCCCACGGCATCTGCTCCCCGTACCCGCGGGGATGGTCCCTCGCAGCCGAGCTCGCCGGACTTGATGCCGCCCTGCTCCCCGTACCCGCGGGGATGGTCCTTTGGTTTCTTTGGGGTCAATGCCCGGGCGGGCTGCTCCTGTTTACTGGGGGCCTGGGGCGACCTGTGTCATTTCGTGTGGGGTTCTGGGCCGGCCGTCCGTGCTCGGGGGTGGGGTTGCGGACGGCCGGTCGTTGGGGCACCTGTCCTGTCGGGTGCCCTGTTCTGACCGTACGCTGTGGTGGGCAAGAAACGCCTGTAGCAGCGCTGCTGTTCGCGCCGGGGCGGGTGATGTGGCCTGGCATTCGGCCGAGCCGCTACTCCCCGCGCCTGCGATCGCCGACGGGAGAGT # Right flank : CGAGGCCCGGGTCTGGTTCGAGCTGGCATCGTGCTGCTCCCTGTCTGTGAGTGGAGGGTCCCGCGCGTCGGCGTCGTCGTTCTTCGGGGCGTGGTGGGTGCTGTTGAGCAGGGGCGGCAGGTTTGCCGCACCCGTGTATACGTGAATGTATACTTGGGTTATGTCTGATGCGATGATCAGGGTGCCTGCTGAGGTTCGTGACCGGCTGGCGGTGATTGCCGAGTCCCGCGGGGTGTCGATCCGGTCTCTGGTTCAGGAGTTCGCGGAGTCGACGTTGACGGAGGAGGAGCGTCGTGAGCGGGCGGAGCGGACTCGGGGGTATCTCGCCGAGCATTTCGGTGTCGAGGTGAGTGACGAGGAGAGCGCGGCGATGGGCGCCAGGCTGCGTGAGGCGTTTGCCGGCCGGCGGGGTGCGGCCGCGTGATCCTGCACCATCTGGTTCTCGATGTGACGGCTCTGTCGGCGTTGTCGGGGAACAGGCAGGTGTCCGCGTTGATCCA # Questionable array : NO Score: 4.61 # Score Detail : 1:0, 2:3, 3:0, 4:0.35, 5:0, 6:0.25, 7:-0.14, 8:1, 9:0.15, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACCCGCGGGGATGGCCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCACCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.00,-9.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [48-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [28.3-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,1.15 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], // Array 4 8854102-8857152 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP010407.1 Streptomyces vietnamensis strain GIMV4.0001 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================================================================================================================== ================== 8854102 28 75.9 10 .......TG...G....A.C...-.C... AGACCCCCAA Deletion [8854140] 8854140 29 96.6 32 ..C.......................... GGGCCGCGACCGAACTTCTTACCGACGGCGCT 8854201 29 93.1 32 ...........TC................ AACCCGGCCTGGATCGAAGTCCGCGACATCGG 8854262 29 82.8 32 ...........ACCT.........T.... GACTGCCCCCGCGGCGTGCCCAAGCACTCCCT 8854323 29 79.3 32 ...........ACC....A.A.......G ACTGACGGGGGCCGTAACACTTGCCGCTCGTG 8854384 29 86.2 32 ...T.......A.C.....A......... ACGGTGACCATCACGAACGCCTACGGCTGCCT 8854445 29 82.8 32 ..A.......TTC...T............ GTCGACCGGAACCGCCGGCGGTTCCTACTGCT 8854506 29 96.6 32 ...T......................... GTCTGGCTGGACGGACCAGCCAAGGAGCCGAT 8854567 29 89.7 32 ........T..G..T.............. CTGGGTCATGCCTTCCCACGGGGATAGGTGGA 8854628 29 89.7 32 ........T.T.................T CCCTCGGGCAAGAAGGTGACCTCGTCGTAGTA 8854689 29 72.4 170 .....T.T...GC.T.A......AC.... GCGCTCGTTGACGCCCAGGCCGTCACCGGGCTCTGTCCTCCGCTCGCGTGGGGGCGGTCGGCGTTCCGGTCGCTTAGGTAGCTTTGGTCGCGGTGCTCCGTGGGGTGTGGTGAGTACCGACGGGTGTACTGACCATGCCTGCGGTGCGCTTACCACCGCGCTTACCATGG 8854888 29 100.0 32 ............................. TCGTAGTCCACGCCCTCGCGGAGCCAGATGCC 8854949 29 86.2 32 ...........ACC..............T GCCTTCTGGGTGTCCTCGCTCTTCGTACCGAA 8855010 28 82.8 32 .....T.....G.C...-.......C... TGGCAGCGCGGTTTTGGTCTGTTCTACGTCAG 8855070 29 82.8 32 ...T.......GCC..T............ AAGGTCCTTCCCGAGGTCAAGGGCAAGCTCTC 8855131 29 79.3 28 ...T.......G..T.T.........T.G TTCTGACCGGGTCCGGGGCGGCGCTGGT C [8855156] 8855189 29 86.2 32 .......T........T....T....A.. AGGCAGTCTGGAGAAGGTTCCATCGCCGTCGT 8855250 29 82.8 32 ...T.......T........A......AG AGCACGGCGCTCGGTTATGGCCTGCTGGAGAG T,G [8855258,8855266] 8855313 29 79.3 32 G.C.....T..TC.......A........ TGGCCGCGCTCCACCCGGACGTGAAGACCACG 8855374 29 93.1 32 ............AC............... TGCGTCAACCCCGCGCACCTCGAACTCACCGG G,T [8855385,8855390] 8855437 29 96.6 32 ...........T................. GCGACGGACCTGCGCGGCAACGCCAACGCGAC 8855498 29 75.9 32 G..T......TA.CT.........T.... GGCATGGATTAGAGCCCGCCCCCGGGTTCGAA 8855559 29 96.6 32 .............A............... AGCTGCGCCTACAGGAGGTTGATGGCGTCCTA G,C [8855570,8855573] 8855622 28 79.3 36 .....T....T...T.-.....G.T.... TCACCGCCGGTCGACAAGCTGGTGCGCCCGGAGGAC TA [8855632] 8855688 29 72.4 83 .....T.....G.TG......T....GTG GGGGAGGGGTGTCTGGTTTGCCGGTTTCGGTGAAAGTGGTTCAGATGGTGTTGTTGGTGGGATAGAACTGCAGGTCACGAAGT C [8855711] 8855801 29 100.0 32 ............................. ACGACGCCCATCACGGCGAGGCCCGCGAGGAC 8855862 29 100.0 32 ............................. TCGCCCTCTTCCTCGGACCCGCGCCACGGCAT 8855923 29 96.6 32 .........A................... ACCCGGAGTGGGCGGCGGAGACCTGGGGGCGG 8855984 29 100.0 32 ............................. CAGTCGATCCCGTCGGCCATGTGCCCGACCGT 8856045 29 100.0 32 ............................. GTGCGGATCGGCTTGTCCCCGATCCGGACTCC 8856106 29 100.0 32 ............................. GAGCCCATCGAGGGGAAGCCCAAGACCACGGT 8856167 29 100.0 32 ............................. CGGATGGACGCCGTGGTCACCAAGGCGATCCA 8856228 29 100.0 32 ............................. TCCGGCGCGGCGCACAACCTCGCCGGGATGAG 8856289 29 93.1 32 ...........TC................ AACATCCAGAAGTTCAGCCCCGCCGTGCCTGG 8856350 29 86.2 32 ..........TACC............... CACCACACGTGGCAGGCCGCGGCTCGCAAGTA 8856411 29 89.7 32 ...........GCC............... GCGGAGATCCGCGATCAGTGGACCGACCTGAT 8856472 29 86.2 32 ...........G.C...A......T.... TGGCCCGTGGTCTACCTCACCGCCCCGAACAC 8856533 29 82.8 32 .......T...ACCT.............. CTGCTCCGGTCCCAGGCTGGCTACCACGAAGG 8856594 29 89.7 32 ...........ACC............... GATGCGACGTCCGCCGCACGGTTGGCCCAGTC 8856655 29 86.2 32 ...........ACC..............T GACCGTACCGTCAAGGTGCGTACTGCGCCCTC 8856716 29 82.8 32 ..........TA.C.......G..T.... TCGAAGAACTCTTGCCGTAGGAACCGGGCGGT 8856777 29 93.1 32 ...........G.............C... GCTGGGCCACCCTCCTCGACGAGCTCAGCGTT 8856838 28 89.7 34 ........T.......-...........T GCCAAGCGCCGGCGCCATGGCTGCGTCACCGGCT A,C [8856849,8856852] 8856902 28 79.3 32 G.T....G....C...-....G....... GGCGTGATCGTCGTCGGCGAATTGGTCGGCGA 8856962 28 79.3 73 ........T..G.CT.T........-... GGCGGTGTCGAGCACCGGCCCGCGCTTGGTTGGCCGCTCCCCGTGCGGAGGGTGTCCGACTTCGTGGGTACGG 8857063 29 82.8 32 .....T....GT..T......T....... GAGTGCGTGGCGTGTGCGTTCACGCCGGCGGT 8857124 29 75.9 0 .....T....GT..T......G.....TG | ========== ====== ====== ====== ============================= ========================================================================================================================================================================== ================== 47 29 87.9 37 CTGCTCCCCGCCTGCGCGGGGATGGTCCC # Left flank : TGTCGAGGTGAGTGACGAGGAGAGCGCGGCGATGGGCGCCAGGCTGCGTGAGGCGTTTGCCGGCCGGCGGGGTGCGGCCGCGTGATCCTGCACCATCTGGTTCTCGATGTGACGGCTCTGTCGGCGTTGTCGGGGAACAGGCAGGTGTCCGCGTTGATCCACCGGGCTCATTTCGAGGTGGAGACGCGGCTGTGGGTGCCGGTGCTGTCGGCTCTGGAGGCCGACCGCGAGCATCCCGGGCTGGCGGAGCACCTGGGACAGCTCGACGTCCTCCACACGGTGGACCTGGACTATCCCGCGATGCTGACCGTGGCCCGGCTTCGTGGCGAGGGTGTGGCGCCGGGTATCGGGGCTGCGATCCACGTCGTGCGGCATCTGCCCCAGTGGGGCACGGACGCACTCGTGGCCACCGTCGATCCGAAGGCGTACGAGGGACACGGCGTGGCGTTGTTCGACCTCAACCGCTGAGACCACCAGCCACCTCCAGGCCAGAGTGACGA # Right flank : GTGTTTCGGTCGCTTCGGTCGCTGTGTGGTGGGGGTGTGTTGGCGATGTCTGCGGTTTGCTTACGGTCGGGCTTGCCACGGCAGTCCTCGTTCAACTGCTTGTCGGCGGTGTGGGTTTTTGTATCGGTGGGGGCGGGTTTGGGTGTGTCTGGATGTGGCCGGGAGCGTCAGGGCTCTGGTGGAGTGTCTGGGGTAGGCGGGGTGTCTGGGGTGTGATTTTGCGGGTGTCTCCGCTTCCTGATGCCGGGTGGCTGGGAGTGTTATCCCGTGGTTGCCCTTTGTCGAGTGCGCATACGCTCTTCGTTGATGAGGGGGGTGGGGGTTGGGATGGGTGACGGGGATGTCGCTGGGGATGTCGCTGAGTACTTCACGTTGGTCTGTGATGACCCGTCCTACACGGTTGTGCTCTTCGGTTGCGGGCCGTGTGAGTTGGATGTGGTGCGGGCTGTGCGTGAGGTGACGGGGCTGAGTCTTTGGCATGGCAGGGTGCTCACGCGGCG # Questionable array : NO Score: 4.42 # Score Detail : 1:0, 2:3, 3:0, 4:0.40, 5:0, 6:0.25, 7:-0.44, 8:1, 9:0.21, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCCTGCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCCTGCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [66-61] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,1.15 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], //