Array 1 208880-207678 **** Predicted by CRISPRDetect 2.4 *** >NZ_LUDM01000002.1 Riemerella anatipestifer strain RCAD0150 ZB100001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 208879 47 100.0 30 ............................................... CATCCAGTTCACGTTTCGCTTCCGCGCTGG 208802 47 100.0 30 ............................................... TGAATGGTTCAAGAAGGTACGTGGAGTATA 208725 47 100.0 30 ............................................... AAGAATTTTTAATGGGATATGCTTTTCCAC 208648 47 100.0 30 ............................................... ACATTAGTGTGCGACCCTAAAGAGACAGAG 208571 47 100.0 30 ............................................... TTCAATTGTGAGGTTGTTGCTCCTCCGCCG 208494 47 100.0 30 ............................................... CCGATATAAATATTTTTTTCGTTTTGGTAT 208417 47 100.0 30 ............................................... GAGGTGTTGTCATATCTCAATCTCGTCTAT 208340 47 100.0 30 ............................................... TACTTCGTTTATTAGTTTTATTGCAATGTT 208263 47 100.0 30 ............................................... TAGATACATCTCTTTATCTTCGTGTAAAAT 208186 47 95.7 30 ........T...............G...................... GTCTTTGAGGTAAGGTTTTGTCAAATCCCA 208109 47 95.7 30 ........T...............G...................... TAATGGAGATTATAATATCCAGATACAAAC 208032 47 95.7 30 ........T...............G...................... TCTATCGAAGTGTTTAAAAACACTTGATTT 207955 47 95.7 30 ........T...............G...................... GATATAGTATCAGATGAACCGACAACGGAC 207878 47 95.7 30 ........T...............G...................... TGATTGACTCTATTTTCTCCTGTGCAGATA 207801 47 95.7 30 ........T...............G...................... TTATTAAAAGTTTTCCGATACTTCCTATGT 207724 47 93.6 0 ........................G..................T..T | ========== ====== ====== ====== =============================================== ============================== ================== 16 47 98.0 30 GTTGCGAACTATCACAAAGATAGTAAAAATTGAAAGCAATTCACAAC # Left flank : CTGTTTATAAATGTTATACTGGAGAAAAAAGACAAATATCTGTGCCTGAGTTTTATGAAGTTTAATCGTTTTAATGCTTATAGAGTTATGTGGGTTATGGTGTTATATGATTTACCAACAGAAACCAAAGCGATGAGAAAAGCAGCTCAACTTTTTAGAAAACGCTTGGAAGATGATGGGTTTAGTCTTTTCCAATTTTCCATTTATATACGGCATTGTCCTAGTCGAGAAAATGCGGAAGTACACATCAAAAGAGTAAAATCAATACTTCCCAAGCATGGCAAGGTAGCTATAATGAGCATTACAGATAAACAGTTTGGAGATATTGAAATTTTCTTTGCGAGAGCTAAAGAGGAACCAAAACCAACCTATCAGCAATTAGAACTTTTTTAGGAATAGAAAAAGACTTTACATCAAACAAAAATAGAGAAGAAATAGTAAAAAATCTAATCCTATAAAAACGCAAAACCCATTGAAAAACAATGGGTTTATTTTTTGAG # Right flank : ATTACTGTTTGTTATTGGTTTTATTTTTTAAGATATAAAACACGCTTCCAATTATGTAAACCGACACAATTAAATTAGATACTAAATTAAAAATCCCTATACTCCCAAAATCCATTACAATGTAGTAGGAATTATAAATGATATAAAAAATAGAAAATACAATAAGTATAAAATATAGCATAGAGTTTTTCATTTTTATAAATTGCAAGCTGTTACAAAGATAAAAAAAGAGCTACCTCCAAGAGGTAGCTCTACGTTTTTAAATTGAGATATTCAGTCTACTTTAAAGTAATATTGTCTATTTGTACAGTAGTAGTTACAGTAGTGTTACCTGCATATTCAAAAAAGATATAACCTTTTCCTGTAGCAGGAATTGCAAATTCGCCACTATCTACCCAATCGGCAGCATAGCCATTAGTATTTTCTTTTGAAAGAGTAAACTTAGAAGTAATATCTATTAGGTCGGTTTTATTTACAACTCCGCCAGGTGTATATTTCGT # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGAACTATCACAAAGATAGTAAAAATTGAAAGCAATTCACAAC # Alternate repeat : GTTGCGAATTATCACAAAGATAGTGAAAATTGAAAGCAATTCACAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.09%AT] # Reference repeat match prediction: F [matched GTTGTGAATTGCTTTCAATTTTTACTATCTTTGTGATAGTTCGCAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.70,-6.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [4.87,4.91 Confidence: LOW] # Array family : II-C [Matched known repeat from this family], // Array 1 208219-206038 **** Predicted by CRISPRDetect 2.4 *** >NZ_LUDM01000004.1 Riemerella anatipestifer strain RCAD0150 ZB100003, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================================================================== ================== 208218 36 91.7 30 .................G.....TG........... ACTAGTAAAATAATAACGATATGAGAAATT 208152 35 83.3 80 ...................-..CT....T..A...A CTCCGCTGAAAATATAACGAAGCGTGAGCTAAAATGAGAGCAGTCCCAACACAACAGCAATGCAAGAAAGTATAGGAAAT T [208127] 208036 35 83.3 79 .......G...........-..TT....T..A.... TCCGCTGAAACAACAACAAAGTCGTGAGTAAAATGAGAGCAGTCCCAACTTCGAGGGCGATTAGCTGGACTTAATCGGC G,C [208003,208012] 207920 35 83.3 79 ...................T.T.-..T.T..A.... TCCGCTGAAAATATAACGAAGCGTGAGCTAAAATGAGAGCAGTCCCAACACAACAGCAATGCAAGAAAGTATAGGAAAT G,CG [207886,207900] 207803 35 83.3 79 .......G...........-..TT....T..A.... TCCGCTGAAACAACAACAAAGTCGTGAGTAAAATGAGAGCAGTCCCAACTTCGAGGGCGATTAGCTGGACTTAATCGGC G,C [207770,207779] 207687 35 83.3 79 ...................T.T.-..T.T..A.... TCCGCTGAAAATATAACGAAGCGTGAGCTAAAATGAGAGCAGTCCCAACACAACAGCAATGCAAGAAAGTATAGGAAAT G,CG [207653,207667] 207570 35 83.3 79 .......G...........-..TT....T..A.... TCCGCTGAAACAACAACAAAGTCGTGAGTAAAATGAGAGCAGTCCCAACTTCGAGGGCGATTAGCTGGACTTAATCGGC G,C [207537,207546] 207454 35 83.3 79 ...................T.T.-..T.T..A.... TCCGCTGAAAATATAACGAAGCTGTGAGTAAAATGAGAGTAGTCCCAACAGACCTAGCAGATGACGGTAAACTAAACGG G,CG [207420,207434] 207337 35 83.3 82 .......G...........-..TT....T..A.... TCCGCTGAAAACTTACAACAAAGCTGTGAGCTAAACTGAGAGCAGTCCCAACTTTCTGTGTTTTGTGCTGTAGCCTTAATAT G,C [207304,207313] 207218 35 83.3 81 .....T.............-..CT....T..A.... TCCGCTGAAACAACAACAAAGCTTGTGAGCTAAACTGAGAGCAGTCCCAACAATCAGACTTAGCAGATACTCGTGAAAAAA G,C [207185,207194] 207100 35 83.3 80 .......G...........-..TT....T..A.... TCCGCTGAAAATACAACGAAGCTGTGAGCTAAAATGAGAGCAGTCCCAACTTGGACGAATAATACGCCATTGTTTAACTC G,C [207067,207076] 206983 35 86.1 80 ...................-..CT....T..A.... TCCGCTGAAACTACAACAAAGCTGTGAGCTAAAATGAGAGCAGTCCCAACGGAAGGTAGAATTGAATGTTTTCATGATCT G,T [206950,206959] 206866 36 97.2 30 ...................G................ ATAGCAGTAGAACCATCAAACGCTGTGGCT 206800 36 97.2 30 ...................G................ CGGCAACAAAAGAAGGAGAAGAACAAAGCA 206734 36 97.2 30 ...................G................ AGCAACATATACGAAAATCCAGAAATCTTA 206668 36 97.2 30 ...................G................ TGTGCTTCCTACAACGAGTAGCGTTCCTTT 206602 36 97.2 30 ...................G................ TTAACTAAGTTACCTAGAAGTATAAATGAA 206536 36 100.0 30 .................................... TCTGCATCTACGAAGGTGATGAGGAAAAGG 206470 36 100.0 30 .................................... CAATAGGACCTATTATATTTACAACAACAG 206404 36 100.0 30 .................................... ATTTTGAAAATATAGAGGCGATAAGCCTTT 206338 36 100.0 30 .................................... ATTCTAAAAGGTACAGAGAATGAAGCTAAA 206272 36 94.4 30 ...................C........A....... TCAACCAATTTAATCTGCAACTCTGAAATG 206206 36 97.2 30 ...................C................ TGATAGGAATATTTCTTATTCTATTTTTTA 206140 36 100.0 31 .................................... TCACAAACGGAAAAATATGTTTATTCCGTTG 206073 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ================================================================================== ================== 25 36 91.5 53 GTTGTGAATACCCTTCAAAATGAGAGCAGTCCCAAC # Left flank : CATTAAAATAGATGGGGACAACCCTAAAAACGGTATTGTCTTTAAAAACTTAGACACTCAGCAAGAAGTGAAACTCTCAGCAGAGCATATTGTCCTTAATGAGCCGTCAAGGTTACTCATTCTCGTTCCTACAGATTTAGAAGCGGGTAACTATGAACTCAGCATCACCACGCAAAGCAGTAAAGGCACTACCTTACTGAAAGAACCCCGAACCGAAACACTAAGCACGCCTATTACTATTGTGTAGTGTGTTTTTGGCACTTCTAAATAAAGACCGCCCTTCCTTAATGCTAAGGAAGGGCGGTCGCTTTATAAGAGGAAGACACTTCACTGCCTAAGGCGAAGGCTCTTCTCTCGGTAAGGAGAAGAGCCTTCCCTCGTACGAGGGAACCGACTTCGCCTGTACTAAGGAAGTGAGGTATTTTCTGTAATAGAATAAATAGGAAGCAAAATCCCTGCTCTGTACCGTACAGAGCAGGGATTTTTTTATGCCCTTAGGT # Right flank : TTAGGAGCAAATAAGCTGTATTTATTGGTGTTGTGAATACCCTTCAAATGCTGTGCATTATTGTTATGATAGGGTATTGTCTTTTTTGGGTGCTTGTTTTATCTCGATGTTTCAAAGAACGCTTTTCTTTACAACGCTTTTAAATCGCGTTGTTCTATTTTTAGGCATTGCCTAATGCTTTGGCTCAACTTATGATGCAGCACCTTCATTCTGGTAGCCGCCTCTTCGTTTTTTAGTCGGAACTCCGCCTCGGTGCTGTTTTGCTCTGCAAGTAGGAGCTTATGAACGATACTACGGTACTCAAAAAACTTTTTGGTGACTTCCTCAGATAAGAAGAGCCCACAGCCCTCCCCATAAAATAGTTCTGGGAGCTCCCTTAGAAAGGCTTGGGCATTGGCTCGGTTAATATAATGAATTTTATCCTTTTGCCCTTTGGGAACTTCCCATTTTAAGAGGTTTTTGGGGTTGTCTTGGTCGGTCATATACGCCAGCAGACGGTA # Questionable array : NO Score: 3.64 # Score Detail : 1:0, 2:3, 3:0, 4:0.57, 5:0, 6:0.25, 7:-1.51, 8:1, 9:0.33, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGAATACCCTTCAAAATGAGAGCAGTCCCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTGATTACCCTCCAAAATGAGAGCAGTTCCAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.30,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-77] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.05,4.5 Confidence: MEDIUM] # Array family : II-C [Matched known repeat from this family], //