Array 1 218784-220397 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXJY01000006.1 Salmonella enterica strain BCW_2008 NODE_6_length_343339_cov_4.11226, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 218784 29 100.0 32 ............................. AACTGAAACCAGGCCAGGTGATATTTATCAAA 218845 29 100.0 32 ............................. CCGAGTGTGAGCAGGCTATTTATGATGAGCGC 218906 29 100.0 32 ............................. GGCTCCGAATGTGAAGAATCCGACGCTATTGA 218967 29 100.0 32 ............................. GCCAGCGCGCCTGCGGCAGCACCGGCAGCAAT 219028 29 100.0 32 ............................. CGCATTATTAATGGCGTTGATGTTCTGGCGGG 219089 29 100.0 32 ............................. GTAATCAATCTCATATAGAGCGGGGGGGGGAT 219150 29 100.0 32 ............................. TTGATTGATCGTTATCAATGGGGAAAGAGATG 219211 29 100.0 32 ............................. TAATACCCGATCGAGCGCACTGTGTCGCCGGA 219272 29 100.0 32 ............................. CGCGAGCAATCCCATCTGACGTTCCGGAGACA 219333 29 100.0 32 ............................. GTCATCGTTATACACGTGACGGTTTTAATAGT 219394 29 100.0 32 ............................. AAAATGAACAGCCACACATCCGCCAATAAAAA 219455 29 100.0 32 ............................. GCTGTCGGTCGCAGTGTGGATATTGCGATCAA 219516 29 100.0 32 ............................. GGGCTGAACGGCGATCTGATTACGTGGAGTAA 219577 29 100.0 32 ............................. TACGCCAGCTATAAGGGGTACACGAACAGCTT 219638 29 100.0 32 ............................. GCCCGAGAAAAGTTGCTTCTCTTTGCTGCTGC 219699 29 100.0 32 ............................. CATACCCTGTAGTTTCAATTTCCGCAGGTGGG 219760 29 100.0 32 ............................. AGCGCGGAATGATTTTTAACGCTGAGATGGTG 219821 29 100.0 32 ............................. TACCGCGACACCGTCAACGACAGCAACCACTT 219882 29 100.0 32 ............................. CAGGTCACTAAAATTTGTAGGGTTATCCACAG 219943 29 100.0 32 ............................. GCGCAATTGCAGTTTGACGCGGTGCTGTCATT 220004 29 100.0 32 ............................. TGTCTTAACTCCATTGCTGAGTCGATTGTGAA 220065 29 100.0 32 ............................. CACACAGAACGCCAGTTATAATCATCGGTGCT 220126 29 100.0 32 ............................. TCGTTTGTGGCGTCAGTAATACTATTATCGGT 220187 29 96.6 32 .............T............... TTTTTAAATCCGGACAGACCCTGTAACGGATC 220248 29 100.0 32 ............................. ATCCGACTGTATGCCCAGCAGAACGAGGGCGC 220309 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACC 220370 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 27 29 99.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGATCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGACCCCTGCCGATTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //