Array 1 49971-48775 **** Predicted by CRISPRDetect 2.4 *** >NZ_KQ968977.1 Streptococcus sp. DD04 scaffold00002, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================================== ================== 49970 29 100.0 40 ............................. TATTTCTTGCAATCTCGCTGAGCTTTTCAATTTTATGGTT 49901 29 100.0 46 ............................. TTTAACGCTTCCGATTCTGATTGACCTTCTTTGATCAACCTTTGGA 49826 29 100.0 45 ............................. TTGTTTACTTCGACACTATAAACTCCTTCTCCCGGAGTTTCTTTC 49752 29 100.0 42 ............................. TATTATTTCACCGAAGTTATATAGGCTTTCGGTAATCTCCCA 49681 29 100.0 50 ............................. ATTTCGCGATTTTCTATGTTTCCCATCAGGAAAGTAATCAAATACTACCT 49602 29 100.0 35 ............................. AAATTAACAAGTACTTGTCCGGCGCTCTACGCTAT 49538 29 100.0 41 ............................. CCTTCAGAGTCGAACGGTGCGCCATCTGACCCTTGAGGCTG 49468 29 96.6 52 ............................A ACTCACATCAAAGGCAAGTAATGGCACACTTTCATCAAAGTCACCATCGCAA 49387 29 100.0 40 ............................. AGTGTGACACGTAAGGTATCGCTACGAAGACATCTTCTTT 49318 29 100.0 53 ............................. ATACTTGAAACTTGCACTCGCGAGCTTTTTTTCGCCAGCAGAAGCTCTTGCTT 49236 29 100.0 44 ............................. ATGTTCGCTATGGTTAGATAACCTATACCTGAGCGTTTATAAGA 49163 29 100.0 51 ............................. TTGGAACTAGATTATCTGGATCGTTGCTTCCTACAACAAAAGCTAGAGCCT 49083 29 100.0 44 ............................. ATTTTTTTGACCGTTAATACTCGATTAGTAATATTTGCTTTTAG 49010 29 100.0 43 ............................. TTATCCTTTCTAACTCTTCATGCTTTTTCGAATGTGTTATTTT 48938 29 100.0 41 ............................. CTAAAGCCTTAAAAGCAATTAATTGAACTATCTCCTCTACC 48868 29 100.0 36 ............................. ACTCTTAAATTCTGTCATTTTTTAATGTTCTCTTTT 48803 29 82.8 0 ........................ACTTG | ========== ====== ====== ====== ============================= ===================================================== ================== 17 29 98.8 44 GTTATACCTTACCTATAAGGAATTGAGAC # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGATTTTTCTGATTTTATCTTTCAAAAAGTCGGTCGATCTTTTCGATTTTTTGCCTCTTTTTCAAAAGCTGTCAACCAAGCGGTTTATGAGCGTTAGGACAAAAAAGATCGACCGACTTTTTTCATTGAAATCTTGAAAAAAGCCCTGTTTTTTGATACAATCAATCTAGAAACAGCGAAAATGCTGTT # Right flank : TGTGTCTTTGTCTGTCTCCAAGGCACCAAAAAAGCGAGCAAATTCATGTCTGCTGGGAAGCATGAGAATTTGTTCGCCTTTTGTTTGGTAGGATTATTTGAAATTTCCGTCATGATTTGCTATACTAGTAGTAGTTAAAGATTGTAGCAGAGCCATTGCCTGCTGCATGGATAATCAAGAAAAGTACTCTTCAGTGCTTTTTTATTATTATAGAAATTGGAGGGATTATGCTTTACATTTGGTCTTATTTGAAACGCTACCCCAAGTGGTTGGTGCTAGACTTTGTGTCGGCCATCTTTTTTGTAGTGGTCAATCTAGGATTGCCAACGGTTTTGGCGCGCATGATTGACGAAGGGATTAACCAAGGCGATCAGGAACGCCTATATTTCTGGGGCTTTATCATGCTTCTGGTTATTATCCTTGGGATTTTAGGGCGGATTGTCCTTTCCTATGCTGCTGGAAAATTAACGACCAGCATGGTGCGGGATATGCGGAATGAT # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTATACCTTACCTATAAGGAATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.80,-3.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 2 58913-58673 **** Predicted by CRISPRDetect 2.4 *** >NZ_KQ968977.1 Streptococcus sp. DD04 scaffold00002, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================ ================== 58912 29 100.0 39 ............................. GAAAGAATCTAACCAATCGATGTTGTCGACAACTATCTC 58844 29 100.0 44 ............................. CTTTCCGCAGCGTTATCCGGGTGAGGTATCCCTGTGGGTACATT 58771 29 96.6 41 .......T..................... GTAGATTTTAGCTCTTCTTCTTTTTGAGCAAAAGAAGAACC 58701 29 86.2 0 .........................CTTG | ========== ====== ====== ====== ============================= ============================================ ================== 4 29 95.7 42 GTTATACCTTACCTATAAGGAATTGAGAC # Left flank : CATGCTTCAAATAATCGTCCTTATAGTCTGCATCTGGATTTTGCGGATTATATGAAGCCAGTTATCGTGGATCGAGTGATTTTGAGTTTGATCAATAAGCATCAAATCAATGCTACAGATCATTTTGAAGAAAGGGAAGACGGATCGGTTTATCTGAATCGTGAAGGGAAATATATCGTCTTGCGGAGTTTTGAGGAAAAGCTACAGACTAGGCTGGTCATGGGGCGTTCAACCTATACCTATGCCCAGCTTATTCAGCACGATATTCGTCAGTTTAAGAGAATCTTGCAGCAGGATGGGGACTTAAAACGCTTTAAACCCTACAAATACTATTAAAAAGTCGGTCGATCTTTTCGATTTTTTGCCTCCTTTTTAAAAGCTGTCAACCAAGCGTTTTATGAGCGATGGGTACAAAAAGATCGACCGACTTTTTTCATTAAAATCTTGAAAAAAGCCCTGTTTTTTGATACAATCAATCTAGAAACAGCGAAATACTTGTT # Right flank : TGTGTCTTTGTCTGTCTCCGAGGGCACCAAAAAAGCGAGCAAATTCTTGTCTGCTGGGAAGCATGAGAATTTGTTCGCCTTTTGTTTTGTAGGAATATTTGAAATTTCCGTCATGATTTGCTATACTAGTAGCAGTTAGAGATTGTGGCGGAGCTGTTGCCCGCTGCATGGATAATCAAGAAAAGTAGGCTCTATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 5.65 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTATACCTTACCTATAAGGAATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.80,-3.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 1 156128-155731 **** Predicted by CRISPRDetect 2.4 *** >NZ_KQ968976.1 Streptococcus sp. DD04 scaffold00001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================================ ================== 156127 30 100.0 44 .............................. ATTAACACCGCCGCCACCAAGTTTGATAGATGGTTGAGTTAGAA 156053 30 100.0 42 .............................. TCTTCTCTTGAGTACGCATGAGGAGTGCGAACTAAGTTAGAA 155981 30 100.0 43 .............................. AAATCCACACTAGCTGTTATTAAGACATAAAATTCAGTTAGAA 155908 30 96.7 44 ..........................G... TTAAATGCCAGAACTTGTTGTCCTGACAGGTCTTGGGTTAGACC 155834 30 93.3 43 ...AA......................... AAAATCTTCTTCTTGAAAAAACCGGATTGAACCATTGTTAGAC 155761 30 100.0 0 .............................. | A [155752] ========== ====== ====== ====== ============================== ============================================ ================== 6 30 98.3 43 CCCCCAAAATCCTCGCGAGGGGACGGAAAC # Left flank : GAGTTTTGAAGCCTTGGATCCAGCTGAGTATGTGTCTAGCTATACAGGAGGAGGGACAGATGGTCTTCTTTAATCTTAATGATGATGAAAAAGAGTTTGCCAGAAAGAAAACAAAATTTTGTCTGGTTATTTACGATATCGTCAGCAATAAGCGGCGCTTGAAGCTGGCAAAGCTTTTGGAAGGCTATGGCGTGAGGGTTCAGCGCTCCTGCTTTGAGCTGGCCCTTGAGAAGCTGGACTTTGACTGCCTTGTGAGGGAGCTGAGGGCCTTTTATCAGGCGGAAGAAGGAGACAATATCATTATCTATCTGGGGCATAAGGAAGAGAGGATTGTTTTTAATCCTTATGATGGCGCGGAGTTGCTAGAGGATATTTTGTTCTTTTAAGCTGTTGTTTCTGGGCTAGACATGGTATAATGGAGTTAGGTTTTAACTAGTTTCTAAGGGGTACTAGATGTGGTGGGGGTCTTCTGAGGCTTTATACAAGATATGCTGTTAGAA # Right flank : CCTACAGTACCCCGATTGGTAAATCCTACTCTTTCCGTTAGCCCCCCTAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCTAAACCTCGAGAGGGGACGGAGTAGATGGGGGCTTTTTTGTTTTCTACTTAGATTTTTGCTTTGCCAAGAAAAAAGGATGTTGACTGTTAACGTTCGTTTTTCTCAAACGTTTTAAAAATATTGACAACGCTTTCAAAAGTTGATATAATAAGCTCAGTAAATAATAATCGTTCTAAAGGGCGCCATGAAATCGGTGAAACATTCTTTTGCCTTTTTCTGGCGCTTTTGCAGTATGGAGAGGAGACCGTGTGAAGAAAGTAGAGTTACATTTATCAAAGACAAGACTAAAAGATGAAGAATTGATCAGTAAGCTTCAGGGCTT # Questionable array : NO Score: 3.17 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCCCAAAATCCTCGCGAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.70,-6.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.42 Confidence: HIGH] # Array family : NA // Array 2 168480-168312 **** Predicted by CRISPRDetect 2.4 *** >NZ_KQ968976.1 Streptococcus sp. DD04 scaffold00001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 168479 36 100.0 30 .................................... AGAGGAGTATAAAATGAAAATTGAACAACT 168413 36 100.0 30 .................................... CTGTCGGATTTGAGAAGACATCATAGTGAA 168347 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 3 36 100.0 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : GGATGATTATCTGACTTATCAATCTTTTGTAAAGTGTTGTGAACATCTCCAAATGATGACAGAAAAATTTCCTAATATTTATGTAATCTCTTTTCCTTCAAATGAAGGCTACCTTTATATCAACAGAGAAAATATGGAATTTGTCAATATTATTTCTGGTTTTATAGAGCATTACTATGAATTTCGGTTTATGTATGAAAGTTTTGTACAGCGTTATCCATCCAACGAGATTCCCAATGAAGAAGAATTTTTAATTTCCTTGCAAAAAATTTCTCCTTATTTGTTTAGCTCTGATGTGGAACATATGAGCCTTTCGATTTATGATATGGTTACTTTAAAAATTATGAATAACTTATACCAATATGATAAAATTATTGATTTTAAAGTGCAGATGGCCAATCCATTGTTAATGAGCTTTTTAAAAAGTTAGACTTGACAAGCTTTTTGGGAGAATCTATAATCAGTATGTGAGTACAAAAAGCAAAATTTTTTAATTTGAG # Right flank : AGAAGAAAGCTAAACGGGCTTGGTACTGGTCTCATAAAATGGCTTTTTGTCTTGCTAACTTTATGACTGGGAACAAGCAATGTTGTAGATGGTTCTGGAAGAATTCGAAAGTGAAGATTAGAAGGAAAAGTAATCATGGAAAATGTAAACCAAATCTCCCAATGTCAGACTCTTTGGGCTAGAAATAAGTATCTAGTGCTCAGTCATTCCAGCAAGATCTATCTTGAAATCCGCCAATATCTGAAAAGAGACTTGGTGGAAGCAACACATGTACAAGACTTGATTGTTCAGGCGGTAGCCCTGCCTGAAAACCGCGGTCAGGTCTGCAACGCCTTTCAGCATGTTTGGGGCTATTTTAAGAGAAAAGCTAGCCCAGCTGAAAAAGAAGAATTTATGCTACTTTTAGAGCGATACCAAGCAGGTCAGGTGGAGCAGGAGGCTTTGGTAGAAGCTGTAAAAGGTTTGCTTCGAAAGTACCCCAATTCTTACCTGCAGCAGTC # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [60.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.77 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //