Array 1 72390-74026 **** Predicted by CRISPRDetect 2.4 *** >NZ_MUFC01000011.1 Salinivibrio sharmensis strain DSM 18182 scaffold11.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 72390 37 100.0 33 ..................................... AATTGGGATCCCAAATCGAATGAACGGGGGGAT 72460 37 100.0 35 ..................................... CAACCGGCGCGAAATTAGAAGTATTCATTGGCACT 72532 37 100.0 34 ..................................... CCATGATGGTATCGGCCGACCGCGAGCTGGTTAA 72603 37 100.0 37 ..................................... GTGCCGAGCCGCCGCGTATTTCACCACCATCAACCAC 72677 37 100.0 32 ..................................... TGGCACAGACGCGTCGATTTTCGGCGAGAATT 72746 37 100.0 35 ..................................... AATAGGCGTTCAGCCCAGTGGTGGCGCGGCTTGAG 72818 37 100.0 34 ..................................... CTTGACCGAACCGTACTCTTGCGTGTCGGTAGCA 72889 37 100.0 38 ..................................... AAAGAGTTTCTGATGTGGTGTGAATGCGTCCTCGCGTG 72964 37 100.0 38 ..................................... TCGCTATTGCTGTAGCGTATGCGGTTGCAAATTATAAG 73039 37 100.0 35 ..................................... CAAATTAGCATTGCGCCTCCGGCGCTGGTCTGGCA 73111 37 100.0 35 ..................................... CAGGAAAGCTGGGGTATTGAATACAAGATTTTCAT 73183 37 100.0 37 ..................................... GACCTGGGCCCCGCGGAAACAAAACGCATTGCACTGT 73257 37 100.0 36 ..................................... AGCCGACCAAACCACAGCGCGAGAAATACGACAAGT 73330 37 100.0 37 ..................................... AAGCACTGCAAGATAACTTTGCTGGCGTGACCTTTGC 73404 37 100.0 36 ..................................... CAAGGGATGGGGCCGACGCCTACCTGGGCAGTCAGT 73477 37 100.0 35 ..................................... ATAAAAGGCGCCCCCGAGCGAACCGCGTACAGCTG 73549 37 100.0 35 ..................................... GGTTTCAGGGTCCGCAGCGCCTCGCGCCACGTCGC 73621 37 100.0 37 ..................................... CCGCGTTTGGTATCGAGACCGCGGGCGACGACCTGGA 73695 37 100.0 34 ..................................... CGGCAAAGCTCTCGTGCGTCCCACACGTAAAGCC 73766 37 100.0 37 ..................................... CATCGATGCCCGCGATTTTTGAAACCGCTTCGCCGTA 73840 37 100.0 39 ..................................... TGGCCGGTGAAGCGGGACTTCACATCATCGGGCAATGCT 73916 37 100.0 37 ..................................... AACCAATGACGCCTCTGCGCTGCCGACTCTGGAGGCA 73990 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================= ================== 23 37 100.0 36 GTTTCAGTGGCTGACTTGTTGAGATAGGCTCTGAAGC # Left flank : GCTGAAGACAGCCAAGACCCCGCCATGCAATAAGGCGGTAACCTCCTAAGCAAGCAAAGCGTGAGTGCCGCCACATTGGCGGCGCTTGTTTATCCCGCCACACGCTAAGTGCTCAAAAAGCATACTGAATTCGCCCCCCTTACAGCTAGACACCCTGTGAGCCTTCCCCTATAATCCCACTCCATTCGGCCCCTTAGCTCAGTGGTTAGAGCAGTCGACTCATAATCGATTGGTCCCCAGTTCAAGTCTGGGAGGGGCCACCAGTCATAGCAAGGCGTAGCAGGTTAGTACCTACTACGCCTTTTTTGTGCCTGCTGATTTTTAGTCAAACACTTAGTCAAACAAGGAACGGGTACAACTCCCGTTTTCGCATTAGAAAAAATCTGTTGTCGCGATAACGACGTGAGCATTTCGTATGAGCAAAGCGCCTCAAATCCATTAATGTTAATATTGCTGTACCCAAGTAAGCATTTGAGTGACTTCGCTATTTGGCGAGAATT # Right flank : CCCCTGATTTTTTGTTGTTGATACAGCAAGTTATTAGGGGCTCAGCGCCTATTTTTTTCGCAAACCGCTTTGATGTCAGAAAATGGCGGTATTTTGCGAACATGCTCCTTAGACAAAAATAATCTTCATCTGTCATTGCAGTACCTCAAGTACTCGCACTGTGCGCATTTGCTCTCTGTTGCGCTTGAATGCGGCATACGATGGCTGGAGAGTGTTTGCCTCACCGCATGGAGTGTGGTTAGGCATTTGTCCTTTATTTTATCATCTAGCGTGATCGTGTACTGCTTATTTGCGCTGCCTTTTAGTAATACGCCCGCAACCACTTGTCGTTGATAAGTTTGCTCCGCAGCAAGCATATAGGCGTACAGTTGGACCTTTTGCGCATCGGTGGGTTTGCCCTTATCCACTTTATACTCCACGACCACGCACTTTTCTTCATTGAAGATTAGCTCGTCGATATAACCATGAATGCCTAACGATAGCGCTTGGACATGCGCGTT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGTGGCTGACTTGTTGAGATAGGCTCTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.90,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 1 251206-256058 **** Predicted by CRISPRDetect 2.4 *** >NZ_MUFC01000004.1 Salinivibrio sharmensis strain DSM 18182 scaffold4.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 251206 29 100.0 32 ............................. CGGCCAGCCAATCGGCGAATCCGGAAGATAAC 251267 29 100.0 32 ............................. CCGTTTTCTTCATCCACGCGAAACCCCGACCA 251328 29 100.0 32 ............................. GCTTGCTTGTTGCCATCGCCCAGCCCCCATAC 251389 29 100.0 32 ............................. CCTGCGAGCTTGCCCTCATAGTCTCCGAACGG 251450 29 100.0 32 ............................. CTACTACCGTAGCCGAGACTATTATGAGCGAG 251511 29 100.0 32 ............................. CTGTATTACGGTCATTTTACTTTCTGTATTGT 251572 29 100.0 32 ............................. CCCAGGTTCGATGATGAACTATCCAAACGACA 251633 29 100.0 32 ............................. TATTCAACTATTGGTGATATTCATGGCGTAAG 251694 29 100.0 32 ............................. CCGATTCTCGAAGAGTTGGTGGATTGGCTCAC 251755 29 100.0 32 ............................. GCCTTGCGCTGTACAACGCACTGAAAGCGCAC 251816 29 100.0 33 ............................. CATTGCAGATGTTCCGGCGGTTCGTGACCGAAT 251878 29 100.0 32 ............................. CGCAATACGACATGAACGTGTCGTTTGTTTAC 251939 29 100.0 32 ............................. GCCGCGTTATCGAGTCGGGCACCGTGGCGTGG 252000 29 100.0 32 ............................. TGATTTGTATTGAATGTTAAGCGAGGTGAAAT 252061 29 100.0 32 ............................. TGTGCGAACGACACGCATAAAAAAACCAGCAA 252122 29 100.0 32 ............................. AAAACGACACTCACCGATCTTGATATAGAGCT 252183 29 100.0 32 ............................. CTCACGCCCTCACCGAGCGGCCCTAATACCGA 252244 29 100.0 32 ............................. GCATTAGAAGCAGCCTCGCGCCCTGCCCATTG 252305 29 100.0 32 ............................. GAACAATGGGGTTATACAGCATTCACTAACCA 252366 29 100.0 32 ............................. CTGGTACCGCGTTCTTGACCTACCCACGAGGC 252427 29 100.0 33 ............................. CAACTATGTCCGCCACCGAATTCACTACTTCAA 252489 29 100.0 32 ............................. CTAGTACGCCAGGACGTGGCATACGCCATTCG 252550 29 100.0 32 ............................. CGAAAACAACACCGCCGCTTATATCAGTTACG 252611 29 100.0 32 ............................. CGCGCGCACGGCGAGCCTGTGCGGCACGTTTG 252672 29 100.0 32 ............................. CCTGCCTGATGTGGCCGTCAAAAGCCTACCGC 252733 29 100.0 32 ............................. CTCGCCGATGTGTACCAAGCGGCCAAAGCAGC 252794 29 100.0 32 ............................. CGTTGCCAGCCGTTAAAGTGCGCGAACTGCCC 252855 29 100.0 32 ............................. CGCACGACGACGTTGTGCGTGAGCTGAATAAG 252916 29 100.0 32 ............................. TGACCCCGCCAAAATGCGAAACAATATCTTAA 252977 29 100.0 32 ............................. GTTGGCCGTCAGATGTTCGATTATCCCGAGCG 253038 29 100.0 32 ............................. GCTATCTCAGAGAACGGTTTCGTCATCATTGA 253099 29 100.0 32 ............................. AAAACTCGTTTTTCCCCATCTTGATACGCAAC 253160 29 100.0 32 ............................. AGCGATAACTCGTTAGCAAAGGCATCAGAGTC 253221 29 100.0 32 ............................. GCGGGGCAGTTAGGATTTACTCGTATAGATAT 253282 29 100.0 32 ............................. GAGGGGTAGCGATGCCGTTTGCAATTCCGCTA 253343 29 100.0 32 ............................. CGAAAACAACACCGCCGCTTATATCAGTTACG 253404 29 100.0 32 ............................. CGCGCGCACGGCGAGCCTGTGCGGCACGTTTG 253465 29 100.0 32 ............................. TAAATACGTGTGCCGATAACGGTGATAAATGC 253526 29 100.0 32 ............................. CGGACAATACCCGTTGGCTACGGCATCTTGGC 253587 29 100.0 32 ............................. GTTTCGCGGGAGTTGGGCGCTAGGTGCGTGAT 253648 29 100.0 32 ............................. CCGCACGATCCCCAAATCAGTGATTAAATTAA 253709 29 100.0 33 ............................. GCGATCTTTCCGAGCTTGAACACGTCAATATCA 253771 29 100.0 32 ............................. CACCCCATCAAACCAACCGCCACTATCGCTCA 253832 29 100.0 32 ............................. CGCACGACGACGTTGTGCGTGAGCTGAATAAG 253893 29 100.0 32 ............................. TGACCCCGCCAAAATGCGAAACAATATCTTAA 253954 29 100.0 32 ............................. GTGCTGGGCGTGGGACTGCCTTGTATCCCTCT 254015 29 100.0 32 ............................. ATATTAGTGTGAACAATGTCTTGTTTGCAGAC 254076 29 100.0 32 ............................. TGCGCGAAATGCCACCTGTTGAAGTCGAAAGC 254137 29 100.0 32 ............................. TCTTGATTAGACGGGCATTTTCTTCCTTTTCT 254198 29 100.0 32 ............................. ATACAGTCCCTTGCTCAACATCAACATGAAAC 254259 29 100.0 32 ............................. TCAGTGGTTCAGTCGCATGGGATAGACCCTGA 254320 29 100.0 32 ............................. CATGAACATGGGGTCTTGACAGAGCGGGTTGG 254381 29 100.0 32 ............................. AAATGCGCGTTAATTTCAATGACGCATCAAGT 254442 29 100.0 32 ............................. CCTGCCTGATGTGGCCGTCAAAAGCCTACCGC 254503 29 100.0 32 ............................. CCGCTCGAAATGGTAATTGCACCAATGGCGGA 254564 29 100.0 32 ............................. CCAAGACTGCATTCATAATGAATGCCATCATT 254625 29 100.0 32 ............................. CGTTCCGGCGCGGGTTCCGGTGGCGCGGTGAA 254686 29 100.0 32 ............................. AATCGCGAAGGCGCGGCCAAATCTCTGTCAGC 254747 29 100.0 32 ............................. TTTCGATCAGCGAGGCTCGGCTCTGGCAAACC 254808 29 100.0 32 ............................. TTCATCAGTGTCTTCGACGGGTGCTATACCTT 254869 29 100.0 32 ............................. CACGCTCGGATGCGTATGCCGGCCAAATCAAA 254930 29 100.0 32 ............................. CGTTCTGTGCTTAAGGTGTTCAAACGGTGATT 254991 29 100.0 32 ............................. TCGAGATCACGACGGATTTTTTCAATCCATGC 255052 29 100.0 32 ............................. CGATCGGCATAGGCTTTGCGTGATGCGAAACC 255113 29 100.0 32 ............................. CCGTCATTGGCGACCGACACGGACACTAAATC 255174 29 100.0 32 ............................. GTGGTTGGCGGCCTAACGATTGAGTCTGTCGG 255235 29 100.0 32 ............................. TTTACTGGGCTCCCTCTCGATATAATCATCGG 255296 29 100.0 32 ............................. GCCGCCTGTCACGGTGGCCTCAAAGTCTTGGT 255357 29 100.0 32 ............................. CCATCGAGTTTGATGACAAGCTGCGCGCTGAT 255418 29 100.0 32 ............................. ACATTCGGCGCGTCGGCGTGCTGTTCGTCTGA 255479 29 100.0 32 ............................. CGCTTGGGTCCATCGCTATCGATGCGCTGAGC 255540 29 100.0 32 ............................. CATTGAGCAAGATGTTTTCTTTTTGATGGACG 255601 29 100.0 32 ............................. GTTTTACACGGTCATCAAACCAACTCTTATCT 255662 29 100.0 32 ............................. CTAAAAAGACAGGAACAGATGACTCAGATGCT 255723 29 100.0 32 ............................. TATCAACCTGAGCCGATTGATGGTGAATTCTG 255784 29 100.0 33 ............................. CTCTGGGGTAATCTTAATCCATAATGCTAAAGC 255846 29 100.0 32 ............................. TGATGGCGATCAAAAACCATCTCAATGCCTGG 255907 29 100.0 33 ............................. CCTATTAGACGGATTTTGTTAAAGAATAGACCG 255969 29 96.6 32 ............................C GCGGCGCGGCACCCTCGGGGCTGGCTTGTTCT 256030 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 80 29 100.0 32 GTGTTCCCCGTGCCCACGGGGATGAACCG # Left flank : CGATGATCGAAGAGGTATTAGCGGCCGGTGATATTACACCACCTGAACCGCCTCATGACGCTCAACCACCAGCTATACCTGAGCCAAAATCAATCGGTGATAGCGGACATAGGAGCGGCTAGATAATGAGTATGCTTGTTGTCGTCACCGAAGCCGTACCGCCAAGATTACGTGGCAGACTTGCTGTCTGGTTGCTCGAAGTTCGCGCTGGTGTTTATGTGGGCGATGTAACACGTCGCGTGCGGGAAATGATTTGGGAGCAGATAACTGAACTCGCTGATGTAGGCAACGTGGTGATGTGTTGGGCGGTGAATAATGAATCAGGTTTTGACTTTCAAACTTATGGTGAGAATCGCCGAGAGCCTGTCGATTTGGATGGTTTAAGGCTGGTGGTATTCAAGCCGAGTGATGAGGATAAATAAGCCCAGTTTGCTCTTTAAAAAGTTGGTAGAAAAATGCAGGTCGATTTTTGTTATATAAAACAGTACTATCCGCTTAGA # Right flank : GATTTTCGCTGAGATGGGCGGCTGGGAATGTTTGTGTTCTCTGTGCTCATGGGAGGTGGGATTCGAGAGATTATCGAACATGTTACGAGTAGGTGTTTTGGCAGCATATCGATACACTATTTGCGTTAGTAGTAACAAGGGTCCTCGATAAGGCTGAGACCGTCTAATCTCAGCCTGATAATGTTGCCGAGCGCTAATAAGTTACGCCTCACTCAGCTGTTCGACCGCCTCCAGTGCTTGAGAGCCGTAAATCAAAGACGGGCCGCCGCCCATCAATACGGCGACGTTAATGGTCTCGACGCACTCTTGCTTGGTGGCACCGTGTTTGAGCGCGGCGGCCACATGCGCACCAATACAGCCATCGCAGCGTGCGGCAATACCAATCCCTAGTGCAATTAACTCTTTGGTTTTTACGTCAAGATCGCCCTCTGCCATGGCTGCCCGATGAAGCTGTCCAAATGCGGACAGAGTATCACTGCTGTGAGCTTTAAATTGTTTAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGTGCCCACGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGTGCCCACGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.30,-9.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //