Array 1 24294-29125 **** Predicted by CRISPRDetect 2.4 *** >NZ_AMJB01000210.1 Acinetobacter haemolyticus TG19602 A_haemolyticus_TG19602_211, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 24294 30 96.7 30 .............................G AGATGGCTGCCGTTCCTCTTGAATCGTGTT 24354 30 100.0 30 .............................. GCACATTAATTTCAATTGGAATTGTAATTA 24414 30 93.3 30 ............................GA AGCTTTGGCTTTAACCGAGCTAACAGGTGC 24474 30 93.3 30 ............................AG CAGGTGTAACGATCCGCGACTTCAATGAAG 24534 30 100.0 30 .............................. AATAGGTGGGTATCCTGAAGGTTCAAATTT 24594 30 93.3 31 ............................CA TCGGGCGGAACTCCACGCGACATCCTTTTAG 24655 30 100.0 30 .............................. TAGCTGTTGAGGGTGATTTCGCGGCTGCTG 24715 30 93.3 30 ............................AA CATCACCGATGGAAGCAACCTTAAATTCTG 24775 30 93.3 30 ............................CA ACAATGCGCCCCCAGATATCCAAGCCCCAC 24835 30 100.0 30 .............................. ATTAAGCTGCACCTTATTCAAGTTAGAAAC 24895 30 100.0 30 .............................. TACGGTCAATCACTGGATCAGCTAAACGCA 24955 30 100.0 30 .............................. TGGCGATCCTAAACAGGTCAAAGATGAAAT 25015 30 93.3 30 ............................AA GGTAAGCGAGAGCACTTAGCTCAACTAGCA 25075 30 100.0 30 .............................. GTATGGAACTTGTTCAGGTACAGACATAAT 25135 30 96.7 30 .............................A ATTTTTGTTGACTCAACAACATCGCTTCTT 25195 30 93.3 30 ............................AC AATCTGAATATAAAAATATTCGCTATGACG 25255 30 93.3 30 ............................AA TGAGCAATCCTGAAATTATGTGGTCTAAAG 25315 30 100.0 30 .............................. TAGAATTAACACAAAGCGATATTGCGGTAC 25375 30 96.7 30 .............................G TGCGATATGGAGCTGTCATCATCCAATATT 25435 30 96.7 30 .............................A TTGTCAACTAAAATTGAAAAGGTTGCATCT 25495 30 96.7 30 ............................A. CAATGTAGCCAGTTGAATCAATAATCAATT 25555 30 96.7 30 ............................A. ATCCTTGGTCATATCCAATCCCGTGTATGG 25615 30 93.3 30 ............................AG GCGCATTAGTTACCAATCCAAACGGTGGCT 25675 30 96.7 30 ............................G. CAAAAAGGGTTACGTATTCAGTTTGATCCT 25735 30 93.3 30 ............................AA CTACACGTTGAACTTATCAACAATCGTGGC 25795 30 100.0 30 .............................. GCTGCGATATAAGATTCAAATGCTGCAACT 25855 30 93.3 30 ............................AC AGGTTCGTGCTGTACGTGGTTCATTCCCGA 25915 30 100.0 30 .............................. GAAGCGAACTCTCCATCATTAGCAATCCTT 25975 30 93.3 30 ............................CA GAACAAAGCAAGGTGTTTCTTGTCACTGGA 26035 30 93.3 30 ............................CA AAATTAATGTGTTTCCATCACCATCACTCT 26095 30 100.0 30 .............................. TAGTAGAAACACCCGATTTAGCCAAAGCAG 26155 30 96.7 30 ............................A. TTAGCGCAGGCGGTGCAAAATTTAACACTT 26215 30 100.0 30 .............................. CCTAATAATCTCGAAACCTATATTGATAAA 26275 30 93.3 30 ............................AA TGTACAAATCCATACTGTCAGCCACCTGAT 26335 30 93.3 30 ............................AC TCAGGCGCGCCATCCACGATTTTTTTCATT 26395 30 100.0 30 .............................. GCCATGCCTAGCCTCTAGCCACTTGACCGA 26455 30 96.7 30 .............................G CGTCTGGTGTATGGCCTCGTACAGCATGGG 26515 30 100.0 30 .............................. AAAGATAAATATATAAGACCGTATATCAAC 26575 30 96.7 30 ............................A. AAAGCAATATCATGGTTCATATTCACTTCT 26635 30 96.7 30 ............................A. TGAATCCAAGAATAGCTACATCTGGATTAA 26695 30 96.7 30 .............................C TTTAACGTTGTTAGGCGGGTTCGCATTTTT 26755 30 93.3 30 ............................AG ATGGACAGCTTAAGCCTTCTGATGGTGTGT 26815 30 93.3 30 ............................AC CTAAAGATCCTAAACGTGTTTTCTTTTTTA 26875 30 93.3 30 ............................CA AGGGGTTTGAGGGCTTGCCTGTTGATACAT 26935 30 96.7 30 .............................G TTGATCGCAGGCAGAAACATCGATAATGAA 26995 30 96.7 30 ............................A. TCATACTTACCATTCTTGCGTTGAACCAAT 27055 30 93.3 30 ............................AG TGAAGAATCCAACAAACCAAGTAATAATTG 27115 30 93.3 30 ............................AA ATGGGGAAAAGGTCGTTCGAATAGTTTCAG 27175 30 93.3 30 ............................AA CTGCTCATTATATTTTCGATGTCTTTCCTT 27235 30 96.7 30 .............................G ATGAACTAGCTGAATTAAATTGTATAGAAC 27295 30 93.3 30 ............................AA CATGGGATAGCTTTTGATGCCTCCAACAAA 27355 30 96.7 30 .............................G TTGATTTTAAACTACAGAACCCATCATGAA 27415 30 96.7 31 ............................A. GATCGACTATCTAAACTCTGCTCCCTGTTAT 27476 30 96.7 30 ............................A. TAAGCTTTAAACAATAAGGGCAGTAGCTCT 27536 30 96.7 30 ............................A. TTAAATCAATTGAAAAAGTTGTTTCCCAAG 27596 30 93.3 30 ............................GA GTGAGTTCATCACAAACCCGAAAAAGATTG 27656 30 93.3 30 ............................CC CAAAACACGAATCCAAAGGATGTTTTAAAT 27716 30 93.3 30 ............................AA TTGCGGCAATCACCCAAAAAATAGGATTAG 27776 30 93.3 30 ............................GC AGCGCGTGGATTTCTGATCTTATGGTCAGA 27836 30 100.0 30 .............................. ACCTTGCGAAGATGCTGCTAGTTACTGATG 27896 30 93.3 30 ............................AG AGAAAGGTAATTTTGTAAGACTGCCATACA 27956 30 93.3 30 ............................CG TCGGCTTTTGATGCCAAAAACAACTTACAA 28016 30 96.7 30 .............................C GGTCTCTCGCCTTCTTTGCTCTAAGCCTTT 28076 30 93.3 30 ............................GC CTACAGTTTCAACGCTGAATGTTGGCACTT 28136 30 100.0 30 .............................. TGTGATTTCAGGCATGTCCTTGATAATTTC 28196 30 96.7 30 ............................A. TTTACGACACTAAATACGAGCATGGTGTTC 28256 30 93.3 30 ............................AG TTCACGCTGTGCAGCTCGGATCTCGCTCTT 28316 30 96.7 30 ............................A. TTTACGACACTAAATACGAGCATGGTGTTC 28376 30 93.3 30 ............................AA CTCCCAATGCTGACTCAACACGCACTCCAA 28436 30 96.7 30 ............................C. ATCAAATTCATATCTCTATTGATAATAGGG 28496 30 96.7 30 ............................G. GTAACTGAAATTTGAGTTAATCATAACTCA 28556 30 96.7 30 ............................A. TTAAATCATATACAGTAATACGGCAATAAA 28616 30 100.0 30 .............................. AATAATTTCTTGCACGATCTGATTGTCAGT 28676 30 93.3 30 ............................AA TCAAAAAGGGCCGTTCTATCGTTGGTTATC 28736 30 93.3 30 ............................CA TTAAAGTTTTCCCGCGTGGCAACACTCGAT 28796 30 96.7 30 C............................. ATAATCACCATTATAGTCATTAATCATGCT 28856 30 96.7 30 .............................C CTGCCATGCTTGACGGTTCAGCTCCCTAGT 28916 30 93.3 30 ............................GA GTAGGTAACCAATGTTTAACGTGTGGGGTG 28976 30 93.3 30 ............................AA CCTGAAACGCTAGAATTGTAATCGAAAATC 29036 30 100.0 30 .............................. GAAAAGTAGACCTTCCAAGGGTGAGAACCC 29096 30 96.7 0 ............................G. | ========== ====== ====== ====== ============================== =============================== ================== 81 30 96.0 30 GTTCATGGCGGCATACGCCATTTAGAAATT # Left flank : GTAAATGGCTAGAACGATTAATCGATTATGTTCATATTATTCAACCGAGAGAAGTACCTCAAGCCAAGGTTACTGGTCATGCACACTATTATCGAGTCAATCCGAAGATGAGTATAGAGGAACGCATAGTTCATCAAGCGCAGCGTCGCAATATTTCTTTGGATGAAGCTAAGCAACATTTTAAACAATATATTGAGCAACCTATCATTGAACCTTATGTAAGTTTAAAAAGTCTGAGTGCAAAACGTGAGCAAAATATAGATCGACCCTATCGTTTATATATTGGTAAATCTCTTGTTGATGAGGCAAAAGATGGAGAGTTTGGAACGTATGGGCTAAGTCGAATGGCAACAGTTCCAGAATTTTGACCCAATATTTTTTCTACTCTTTAACAGCTTAATAAAATCAATAAGTTACAATAAGTCATTTTTTGATTGGGTAAATTGCTAAAACCCATGATAAGTACTTGTTGTAACTTATATTTTTACTATAATTTTATA # Right flank : CAGGCATGGCAGCAAAGAGATGGTCCCACTTGTTTGAACAACTAAAAGCTTATTTATAAGTGATATTCT # Questionable array : NO Score: 5.33 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.27, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCATGGCGGCATACGCCATTTAGAAATT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCATGGCGGCATACGCCATTTAGAAATT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.10,-6.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 16996-17624 **** Predicted by CRISPRDetect 2.4 *** >NZ_AMJB01000177.1 Acinetobacter haemolyticus TG19602 A_haemolyticus_TG19602_178, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 16996 28 100.0 32 ............................ GAAGAAAAACCCATAACAATCAAATGCTTAGC 17056 28 100.0 32 ............................ ACTAGGTGTAAATGCTCTTTAGGCATATATGG 17116 28 100.0 32 ............................ GTTACGTTCCAACCAACGCTTTTTTAAGCGTG 17176 28 100.0 32 ............................ GCATTAAATCAGGTTTTGGTTCTGCATCTCAC 17236 28 100.0 32 ............................ AATCTGTGAAGGCGTATAATTTGTATCGGTCT 17296 28 100.0 32 ............................ GCGAGTTTATTACCCGTGATGATGCTGGTCGA 17356 28 100.0 32 ............................ TTATGTAGAGCTTAAGTGCAGTCCCGCGAAGA 17416 28 96.4 32 ................A........... TAATCCCAAGCGCTCAAATGATTTTGCTTGTA 17476 28 100.0 32 ............................ GTATCAGCTTTTGGTGGCTTTGGTAACGGCAT 17536 28 100.0 32 ............................ TTGAATTGCGGTAAAGGCAGCCCATTCTGAGG 17596 28 89.3 0 ....................A.....TT | C [17620] ========== ====== ====== ====== ============================ ================================ ================== 11 28 98.7 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : GGTAAATGCGATTTGTCTTTGTAGATTACTCATCTCAATTGTATCTGCATCCACGATCGTTATTTTGCCTACACCTGCACGAGCAAGTAACTCTGCACTCGTACAGCCGATCCCTCCAGCACCAACAATCAGCACATTTGCCAATTTTAATTTTTCTTGTGCTTCAATATCCCAACCATCTAATAAAATCTGACGACTATATAAATGCATTTCGTCATCAGTTAATTCAAAAGTATGTTCTAGATGATCAGACACGTTCCATGATCTCAAAATCGGCTTAATGAATGCTGATTTTAAGTGGCTAATCTCATTTAGCAAAGCATTTAATGCTTGCTGCATCATTTATTTTGACAAATCAACGGATTTACCCCAATATTTTTATTACTCTTTAACAGCTTAATAAAATCAATACCTTATGAATCAGCATAAAAACTTTGGGTGTTGAAGTATTTTTCAACCCAAGCTAATGTTTTTTCTTAATTTATTTATGCTATTTTATT # Right flank : TTCTTCCGATCATGCATCATTTCATAAGTTTGTGCTCTTAATAACTCCTCTTTGGTTGCAAATGAGTTATTTCTAAGCTGGTTTAAAGCACGTTGCTTGCTCGCATCATCAACATCGCTCTTTAAAATCTGATCGCGTTGGGACAAATAATTATTTACCTGATTCTGCCAAACTGCTTCTTCTTGATCAACTTTCTCCAAACGATCAGCGGCCTCAACACCCAACAAGCTTTCTCGCATATTCCGCAATTCTTGAGCAGAGCCACCTTTTTCCTTAATTTCTTGTGTCAGTTGCTGTAATTCAGCAAATTGCATCGACACTCGGACACCATCAGCCAAAGTAGGAGGCAATTGATCTATTAACTTTGCTAACTCAGTTGCTTTTTGCTGTGCTGTTAAAGTCTTATTGGCATGTATACGCATTTGATCAATACTGAATTGATTAAAATTTCGTTCATTTCCAAAAAATGCTTGAATTTCTGCCGCATTGAAAAACTGCTG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 72-1302 **** Predicted by CRISPRDetect 2.4 *** >NZ_AMJB01000155.1 Acinetobacter haemolyticus TG19602 A_haemolyticus_TG19602_156, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 72 30 96.7 30 ............................G. TATATGGTTTGAAGTGGTGACAGTTAAATG 132 30 93.3 30 ............................GC CTGTTTTCTCATAATAGGTTAAGTATTCTT 192 30 93.3 30 ............................GT TAGTAGCTTGCACCATACTTTGCAGAATCT 252 30 93.3 30 ............................GT TGTGATAGGCTTGCAGGGCTTGCTCAAGAT 312 30 96.7 30 ............................G. GCGGTTAATTAAGATAGTGTGCTTATGGGT 372 30 93.3 30 ............................AG CACAACATTTATGAAACTGATGATTACATT 432 30 100.0 30 .............................. GAGGAGCGCCCAAAATGACAATATTCCAAG 492 30 93.3 30 ............................AC ACCAATTGATGCTGGACAAGTGTTTATTGC 552 30 100.0 30 .............................. CACTATACTCAACCAAGACAACTGACTAAC 612 30 96.7 30 .............................G TAAGGGATGTTATGCAACGGCTGGAACATA 672 30 96.7 30 ............................A. TAAAGGCTATTTGCAAAAGGCGTACACTGA 732 30 96.7 30 .............................C CACAACCTCCCTCACCTTCTCAACACCGTG 792 30 100.0 31 .............................. TATAAAGAACGCGTATGTGAATACCACACCC 853 30 93.3 30 ............................AC TAGGGCGAAAACTTTAGTGTTTAACTCTAT 913 30 96.7 30 .............................T AAAAGATTGCACCTATAAATAATCATACTC 973 30 100.0 30 .............................. GTGGAAAAAATGAAAGGTGAATTGACTAGC 1033 30 93.3 30 ............................CT CATCAATCTCTATAACTTCGACTTCCTGAC 1093 30 93.3 30 ............................AT ATAGAACGGTTATGACTTCCCTAACTAAAG 1153 30 100.0 30 .............................. CAAAGAACTCCTCACCATTTATGTCATACA 1213 30 96.7 30 .............................T CATAGATTGCCCCATATGGCTGTTTAGGTG 1273 30 93.3 0 ............................AT | ========== ====== ====== ====== ============================== =============================== ================== 21 30 96.0 30 GTTCATGGCGGCATACGCCATTTAGAAATA # Left flank : TGGGGAGCAAAATATCACTTATAGGAGTTGTTCAAATTTACGGAGCCATCTCTCAAGATGCTTTTGTAAGTG # Right flank : TAGGTGGTGTTTCAAAAAGTATGCTGAAACAAAGCAGGTTGAATTTTGATAAA # Questionable array : NO Score: 5.40 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.34, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCATGGCGGCATACGCCATTTAGAAATA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCATGGCGGCATACGCCATTTAGAAATT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.10,-6.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [65.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 13200-9330 **** Predicted by CRISPRDetect 2.4 *** >NZ_AMJB01000162.1 Acinetobacter haemolyticus TG19602 A_haemolyticus_TG19602_163, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================== ================== 13199 30 93.3 30 ............................AA CGTGCGCACTCCTCAGGGTCTTCCCCTACC 13139 30 93.3 30 ............................AA TAGACAAAGCTATAAATGCACATCCTAAAA 13079 30 93.3 30 ............................GA TACGATCTAGGGTTAATTTTTCAAAGACTT 13019 30 96.7 30 .............................G ATATACAAGGTTTTATCCTACAAAATACAC 12959 30 100.0 30 .............................. ACACATTGCATCTGCATAGTCGGCTGCATA 12899 30 93.3 30 ............................CC AAGTGGAACATGAATAAACGTGCATAAGCA 12839 30 100.0 30 .............................. ATGTTCAAATTGACCGCATTTAAAATATTT 12779 30 100.0 30 .............................. TATGGAATTATTTTATAAGTTTTTTATAAG 12719 30 100.0 30 .............................. ACAAAAGTTATGGACAATAAAACTTACCAC 12659 30 93.3 30 ............................AC ACAAAATCAACCCTTAAATGCCAATTTCTT 12599 30 96.7 30 ............................G. TCCGCATGGGGCATTAATAAACGTGCATAA 12539 30 96.7 30 ............................C. AAAATCACATCTATGTTAAACATTAAAAAC 12479 30 93.3 30 ............................GC ACGAGACTTATAACTCTCATGTCCCGATAC 12419 30 100.0 30 .............................. GTCAAGTACCTGAAAATTTGCTTTTTCATG 12359 30 96.7 30 .............................A CACTATACCCAGCCAAAACAACCAACTAAC 12299 30 93.3 30 ............................CA AAATGAAACACATTGAATTAAACGCTAAAG 12239 30 93.3 30 ............................GA CTAGGCCCGCAAATGGCTTAGTCAATCGGC 12179 30 100.0 30 .............................. GTTAGTGTAGCCAATAAAGCCGATTTGGAT 12119 30 96.7 30 .............................C GAAAAACATTATTCAGAAAAGCCTTATTAT 12059 30 93.3 30 ............................AC TAAATGCCAATCTCTTATGATTTTTAATGA 11999 30 96.7 30 .............................A ATACATATGCAAGGCCATACAAGACAAGCC 11939 30 96.7 30 ............................G. TATGCCGATTCTTGTAATAAAGCATATCAC 11879 30 93.3 30 ............................AG CACACCCAAGCCCGAACGGGTAAGCTATTC 11819 30 100.0 30 .............................. ATGTTCGAATTGACCGCATTTAAAATGTTT 11759 30 100.0 30 .............................. CAATCTTTTCATTTTCTTGATTGTCAGGAT 11699 30 93.3 30 ............................AC CTTCTACCGTTGAATTGTCTTGCTCTGCTT 11639 30 93.3 30 ............................CC GTCATCGTCAGGGTTCTGACTCTTTGCTGG 11579 30 93.3 30 ............................AC TTAGAGCCGCCGTTATAGTTGACTTGTTGT 11519 30 96.7 30 ............................G. TATAGTGAGCACCACGTCCACAGATATTGG 11459 30 96.7 30 .............................C ACCTTGATAAGCAAACGCCTTGTACTCCGT 11399 30 93.3 30 ............................AG ATGGAATGATTGGCGCTAGTCTGTAATACT 11339 30 96.7 30 .............................A AGTCACATAACGTTTTTTCTATACCTCTTC 11279 30 93.3 30 ............................AA ATACAATTACTTCGGCGAACAGTGTAATCC 11219 30 96.7 30 .............................C TAACTCATAATAAATAGACATACCGCCCCA 11159 30 96.7 30 ............................A. GGTTCGGGAGGACTACACAATCACAGGAAA 11099 30 93.3 30 ............................AA TTGACTGCACAAGAACAAGCAGCTACCAAC 11039 30 93.3 30 ............................CA TAACGTACCAAACGGTAGGCTTAAAGAAAT 10979 30 93.3 30 ............................AC CACTCAGTCACTGTTAATGAGTAACCAAAA 10919 30 96.7 30 .............................G GATGGGGCATATCCAAAGAACGCCCTTGCA 10859 30 93.3 30 ............................AA ACACTCGTAGACATTACAATATTTCCGATT 10799 30 96.7 30 ............................G. AGCCAAGATGGTGTTGAAGCGACTGTTACG 10739 30 100.0 30 .............................. GACAAGATTAAACAATTGTGCACTGAGTGC 10679 30 93.3 30 ............................AC TGAGCAGAGTTGCCGCCAATGTTGTAATCC 10619 30 100.0 30 .............................. CTCAATGACTGCAACTTTACAATGCTTGTA 10559 30 96.7 30 ............................A. GCGCCAAAAGCTACAGTGCTGTTCGGAACA 10499 30 100.0 30 .............................. CCAGCGTCAACACCTTTCCCGTGATCCCAA 10439 30 93.3 30 ............................AA CAGGACTAACACCGACATCAACAACATTTA 10379 30 96.7 30 ............................A. CTATCGTGGACTGAACAACATCCCCATTTG 10319 30 93.3 30 ............................AA GTTACTGCACAGCCAGTGTTTTCAGGCTGT 10259 30 93.3 30 ............................AA TAGATAATTGAAGCTTCTTCCATTTCGCAC 10199 30 93.3 30 ............................CC ATCAATAATCAAGCCACCAGTGCTATTTGT 10139 30 93.3 30 ............................AA GGTATAGATTGGGTGATGGATCCTGAATCT 10079 30 96.7 30 .............................A ATTTAAATTGATCGAATGCAGAATGGCATT 10019 30 96.7 30 ............................A. CATGCAGAAATCGCGCTGTTCTGGCTGGCG 9959 30 96.7 30 ............................A. GGAAACTTGAATCTCAATATCTCAGCGGTA 9899 30 96.7 30 ............................C. ACAGCACACCGCTGGTAATAATTCAATTCA 9839 30 100.0 30 .............................. ATCAACACCGTGGTCTTTTATGAATTGGAT 9779 30 93.3 30 ............................AG TGGTAAATGTTTAGTCTTACTTGAGGAAGA 9719 30 100.0 30 .............................. TTGCGACCCAGTAGTGATTTACAGACGGCG 9659 30 93.3 30 ............................GA ATAGCTCAAGTTATGCTATAAATACCTCCT 9599 30 96.7 30 ............................G. TAATTTATTAGATCAGCAACTAAAACAAGA 9539 30 93.3 30 T...........................A. TACCATCACTGCCACCAGTGCCGTTGCCGA 9479 30 100.0 30 .............................. TGAACGACAAATAGAAATCTTTCATGTGAT 9419 30 90.0 30 ........................T...CA TCATAATGACAGAAGGCGAGTCACGGCGAG 9359 30 83.3 0 ........T.A.............A.T.G. | ========== ====== ====== ====== ============================== ============================== ================== 65 30 95.6 30 GTTCATGGCGGCATACGCCATTTAGAAATT # Left flank : TTTACATCAATAATGGCTTCATTTAATGTCAGCATACTTTTTGAAACACCACCGAAAATTAAAGTATTTTCTCCCAAACCCTACCATC # Right flank : GTAAATGGTTATTCCTAATACATTCAGGCACTTTAATTTTTAAATAAGAAAATATACCCTGAACCTAATATATTTTTAGTGAATTTTTCATGCGCGGTCTTTATCTCATCACCAATGATGATCCCATCCAATTATTACTTGAAAAATTAGAAGTTGCTTTAGCGACGAGAAAGGTTGCGATTTTGCAATATCGCCGTAAGAAAGTGGCAAAGGCAGATCAACCACGTGAAGTTGAACAGATCAAAACATTGTGTGAAAAGTACCAAGTACCTTTTGTCATCAATGATGATTTGGCTTTAGCTGAACAATTTGGATTAGGTGTCCATTTGGGGCAGTCTGATGGGGAAATAAGCGATGCTGCTGCACGTTTGCCGCAAGGTGTGATTATTGGTCGTACATGCTTAAATTCACTCGAATTAGCTGAAAAAGCAATTGCTGATGGGGCGACTTATGTTGCTTTTGGTGCAGTCTATGCCACCTCAACTAAACCTGAAGCAGGT # Questionable array : NO Score: 5.30 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.26, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCATGGCGGCATACGCCATTTAGAAATT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCATGGCGGCATACGCCATTTAGAAATT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.60,-8.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //